Wall clock time and date at job start Tue Mar 31 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34733 * 117.00286 * 2 1 4 4 O 1.21494 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.47581 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.41680 * 126.50264 * 179.97438 * 5 3 2 7 7 C 1.34683 * 105.33549 * 180.02562 * 6 5 3 8 8 N 1.35519 * 107.72598 * 0.04984 * 7 6 5 9 9 N 1.28421 * 109.72970 * 359.92634 * 8 7 6 10 10 C 1.47006 * 123.90114 * 179.97438 * 8 7 6 11 11 C 1.53142 * 108.88724 * 342.34150 * 10 8 7 12 12 C 1.53154 * 109.60511 * 51.11587 * 11 10 8 13 13 C 1.50808 * 127.52965 * 180.09151 * 7 6 5 14 14 H 1.08998 * 109.75142 * 284.10672 * 13 7 6 15 15 N 1.46896 * 109.71493 * 44.73551 * 13 7 6 16 16 C 1.46904 * 110.99841 * 202.42144 * 15 13 7 17 17 H 1.09003 * 110.42858 * 322.18262 * 16 15 13 18 18 C 1.54269 * 110.48904 * 84.72622 * 16 15 13 19 19 C 1.53869 * 106.59572 * 142.29079 * 18 16 15 20 20 C 1.54266 * 106.59984 * 359.97438 * 19 18 16 21 21 H 1.09000 * 110.48904 * 95.20726 * 20 19 18 22 22 C 1.50706 * 110.48738 * 217.70913 * 20 19 18 23 23 H 1.08006 * 119.99777 * 114.65170 * 22 20 19 24 24 C 1.37878 * 120.00317 * 294.66132 * 22 20 19 25 25 N 1.31510 * 119.99935 * 2.17358 * 24 22 20 26 26 Si 1.86795 * 120.00062 * 182.45266 * 24 22 20 27 27 H 1.48506 * 109.47178 * 264.74037 * 26 24 22 28 28 H 1.48500 * 109.47113 * 24.73637 * 26 24 22 29 29 H 1.48496 * 109.47471 * 144.73762 * 26 24 22 30 30 C 1.54885 * 104.19960 * 336.38965 * 20 19 18 31 31 H 1.09003 * 109.47136 * 59.99858 * 1 2 3 32 32 H 1.08999 * 109.47454 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47181 * 300.00486 * 1 2 3 34 34 H 1.07993 * 127.33252 * 0.02801 * 6 5 3 35 35 H 1.08998 * 109.56325 * 222.51874 * 10 8 7 36 36 H 1.09000 * 109.66594 * 102.22222 * 10 8 7 37 37 H 1.09000 * 109.44847 * 291.07758 * 11 10 8 38 38 H 1.08999 * 109.42713 * 171.14508 * 11 10 8 39 39 H 1.09005 * 109.54093 * 170.52870 * 12 11 10 40 40 H 1.08998 * 109.53771 * 50.27577 * 12 11 10 41 41 H 1.00893 * 111.00348 * 78.46487 * 15 13 7 42 42 H 1.09004 * 110.03030 * 23.00596 * 18 16 15 43 43 H 1.09001 * 110.03000 * 261.57253 * 18 16 15 44 44 H 1.09002 * 110.03266 * 240.71203 * 19 18 16 45 45 H 1.08997 * 110.07505 * 119.30801 * 19 18 16 46 46 H 0.96996 * 120.00405 * 180.27677 * 25 24 22 47 47 H 1.08995 * 110.75651 * 156.25238 * 30 20 19 48 48 H 1.08997 * 110.75635 * 279.63359 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2194 -0.0005 5 6 3.5375 1.2777 -0.0006 6 6 4.3195 2.4591 -0.0012 7 6 5.5992 2.0391 -0.0021 8 7 5.5888 0.6840 -0.0032 9 7 4.3766 0.2598 -0.0015 10 6 6.8025 -0.1454 -0.0050 11 6 7.9904 0.7153 -0.4450 12 6 8.0321 1.9987 0.3898 13 6 6.8450 2.8890 -0.0011 14 1 7.0081 3.3047 -0.9955 15 7 6.7010 3.9783 0.9739 16 6 7.5989 5.0954 0.6515 17 1 8.5532 4.7216 0.2804 18 6 6.9452 6.0314 -0.3860 19 6 7.3406 7.4660 0.0056 20 6 8.2201 7.3517 1.2678 21 1 9.2762 7.3465 0.9978 22 6 7.9262 8.4825 2.2197 23 1 7.4871 8.2758 3.1846 24 6 8.2176 9.7809 1.8588 25 7 8.7123 10.0370 0.6675 26 14 7.9170 11.1754 3.0647 27 1 6.5871 11.7810 2.7997 28 1 7.9523 10.6465 4.4519 29 1 8.9722 12.2073 2.9014 30 6 7.8112 5.9955 1.8944 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 3.9650 3.4792 -0.0008 35 1 6.6762 -0.9757 -0.6997 36 1 6.9838 -0.5326 0.9976 37 1 7.8824 0.9713 -1.4990 38 1 8.9156 0.1577 -0.2998 39 1 8.9647 2.5291 0.1967 40 1 7.9667 1.7473 1.4484 41 1 6.8599 3.6461 1.9132 42 1 5.8611 5.9218 -0.3571 43 1 7.3179 5.8007 -1.3840 44 1 6.4484 8.0526 0.2245 45 1 7.9048 7.9323 -0.8021 46 1 8.9210 10.9499 0.4150 47 1 8.6108 5.6036 2.5229 48 1 6.8859 6.0956 2.4618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886617533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:22 Heat of formation + Delta-G solvation = -16.353199 kcal Electronic energy + Delta-G solvation = -28704.594676 eV Core-core repulsion = 24760.576388 eV Total energy + Delta-G solvation = -3944.018289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.97248 -40.22722 -38.36792 -36.72892 -36.45541 -34.51417 -32.46297 -31.18312 -30.65109 -28.45808 -28.09091 -27.89185 -26.22214 -24.39436 -23.67359 -22.98887 -22.32014 -20.78649 -19.80616 -19.38249 -18.84653 -17.33858 -17.17818 -16.72636 -16.53696 -16.33523 -16.07506 -15.34654 -15.07109 -14.73368 -14.58124 -14.26065 -14.14691 -13.74587 -13.52127 -13.34233 -12.97911 -12.68898 -12.35355 -12.33243 -12.31000 -12.02221 -11.73058 -11.52723 -11.37336 -11.05344 -10.94790 -10.94484 -10.82762 -10.75468 -10.50363 -10.37070 -10.09027 -9.98627 -9.52494 -9.28129 -9.13492 -8.99583 -8.68916 -8.34079 -8.22784 -5.97980 -4.00011 1.23372 2.00608 2.08007 2.65927 3.11318 3.32941 3.40120 3.43413 3.90758 4.11377 4.26485 4.37933 4.47125 4.49959 4.69605 4.77882 4.91465 4.99321 4.99590 5.02648 5.19788 5.29287 5.32494 5.34159 5.38934 5.47791 5.52772 5.55301 5.71869 5.77536 5.91848 5.94766 6.17503 6.28709 6.35723 6.51008 6.57993 6.64856 6.78391 6.83845 6.98871 7.13813 7.36578 7.48129 7.53067 7.57947 7.76790 7.88042 7.94084 8.05388 8.49778 9.02956 9.63923 11.11860 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.002614 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.553296 B =10707.430749 C =12223.134089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.558 3.442 4 O -0.497 6.497 5 C -0.019 4.019 6 C -0.136 4.136 7 C 0.025 3.975 8 N -0.276 5.276 9 N -0.236 5.236 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.159 4.159 13 C 0.159 3.841 14 H 0.102 0.898 15 N -0.669 5.669 16 C 0.082 3.918 17 H 0.041 0.959 18 C -0.116 4.116 19 C -0.096 4.096 20 C 0.052 3.948 21 H 0.028 0.972 22 C -0.512 4.512 23 H 0.055 0.945 24 C 0.061 3.939 25 N -0.890 5.890 26 Si 0.888 3.112 27 H -0.282 1.282 28 H -0.274 1.274 29 H -0.287 1.287 30 C -0.114 4.114 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.170 0.830 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.341 0.659 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.259 0.741 47 H 0.043 0.957 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 -23.906 -3.644 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.264 6.264 3 C 0.400 3.600 4 O -0.382 6.382 5 C -0.176 4.176 6 C -0.164 4.164 7 C -0.098 4.098 8 N -0.068 5.068 9 N -0.074 5.074 10 C 0.002 3.998 11 C -0.171 4.171 12 C -0.199 4.199 13 C 0.047 3.953 14 H 0.120 0.880 15 N -0.299 5.299 16 C -0.027 4.027 17 H 0.059 0.941 18 C -0.154 4.154 19 C -0.135 4.135 20 C 0.033 3.967 21 H 0.046 0.954 22 C -0.550 4.550 23 H 0.073 0.927 24 C -0.140 4.140 25 N -0.529 5.529 26 Si 0.716 3.284 27 H -0.208 1.208 28 H -0.199 1.199 29 H -0.213 1.213 30 C -0.152 4.152 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.187 0.813 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.160 0.840 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.575 -24.400 -4.066 25.357 hybrid contribution 0.456 1.258 0.841 1.581 sum -5.119 -23.142 -3.225 23.920 Atomic orbital electron populations 1.23299 0.76097 1.03688 1.02723 1.86632 1.23277 1.32287 1.84182 1.19606 0.86353 0.81522 0.72533 1.90883 1.65438 1.36017 1.45853 1.20697 0.90561 0.91485 1.14831 1.21301 0.89966 0.99218 1.05891 1.21323 0.97479 0.83584 1.07448 1.45856 1.04795 1.05424 1.50724 1.73508 0.89639 1.26679 1.17567 1.22181 0.79836 0.93512 1.04285 1.21895 0.97079 0.96655 1.01478 1.22539 1.00601 0.96207 1.00546 1.20133 0.86997 0.89431 0.98764 0.87994 1.60513 1.57086 1.07436 1.04825 1.22552 0.92040 0.89733 0.98370 0.94089 1.22300 1.00224 0.96988 0.95924 1.22067 1.00066 0.91904 0.99444 1.19378 0.95072 0.89964 0.92298 0.95427 1.21165 1.41047 0.91147 1.01630 0.92688 1.24975 0.95187 0.98745 0.95096 1.69969 1.44126 1.19788 1.18998 0.86650 0.77835 0.82242 0.81689 1.20791 1.19938 1.21328 1.22730 1.00250 0.97230 0.95015 0.91761 0.88034 0.91734 0.81276 0.88082 0.88802 0.90186 0.88594 0.89758 0.90870 0.83954 0.91918 0.94217 0.92954 0.92973 0.93169 0.93796 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.34 10.58 -40.58 -0.43 -4.77 16 3 C 0.56 8.10 7.97 34.54 0.28 8.37 16 4 O -0.50 -8.15 16.72 -19.26 -0.32 -8.47 16 5 C -0.02 -0.27 7.17 -82.71 -0.59 -0.87 16 6 C -0.14 -1.94 10.57 -39.53 -0.42 -2.36 16 7 C 0.02 0.30 6.27 -82.17 -0.51 -0.21 16 8 N -0.28 -3.10 3.74 -56.70 -0.21 -3.32 16 9 N -0.24 -3.18 12.04 33.44 0.40 -2.78 16 10 C 0.12 0.83 7.17 -3.69 -0.03 0.80 16 11 C -0.13 -0.77 5.91 -26.58 -0.16 -0.93 16 12 C -0.16 -1.30 5.25 -26.42 -0.14 -1.44 16 13 C 0.16 1.77 2.67 -68.58 -0.18 1.58 16 14 H 0.10 1.19 7.71 -51.93 -0.40 0.79 16 15 N -0.67 -8.99 5.89 -98.90 -0.58 -9.57 16 16 C 0.08 1.30 2.98 -66.04 -0.20 1.11 16 17 H 0.04 0.62 7.30 -51.93 -0.38 0.24 16 18 C -0.12 -2.10 6.26 -25.61 -0.16 -2.26 16 19 C -0.10 -2.20 5.56 -25.62 -0.14 -2.34 16 20 C 0.05 1.24 2.74 -90.11 -0.25 1.00 16 21 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 22 C -0.51 -13.86 8.36 -34.44 -0.29 -14.15 16 23 H 0.05 1.48 7.77 -52.48 -0.41 1.07 16 24 C 0.06 1.70 5.36 -17.82 -0.10 1.60 16 25 N -0.89 -25.50 12.55 55.43 0.70 -24.80 16 26 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 30 C -0.11 -2.20 5.71 -24.73 -0.14 -2.34 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.17 2.52 8.06 -52.49 -0.42 2.09 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.69 7.61 -51.93 -0.40 0.29 16 40 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 41 H 0.34 4.35 8.12 -39.30 -0.32 4.03 16 42 H 0.06 1.14 8.04 -51.93 -0.42 0.73 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 1.30 7.83 -51.93 -0.41 0.89 16 45 H 0.05 1.27 8.03 -51.93 -0.42 0.85 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -31.90 388.99 -9.32 -41.22 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.75 Total: 1.38 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.96 Total: -11.06 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.30 Total: -40.47 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.75 Total: -13.24 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.90 -9.32 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886617533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.870 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds