Wall clock time and date at job start Tue Mar 31 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34733 * 117.00286 * 2 1 4 4 O 1.21494 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.47581 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.41680 * 126.50264 * 179.97438 * 5 3 2 7 7 C 1.34683 * 105.33549 * 180.02562 * 6 5 3 8 8 N 1.35519 * 107.72598 * 0.04984 * 7 6 5 9 9 N 1.28421 * 109.72970 * 359.92634 * 8 7 6 10 10 C 1.47006 * 123.90114 * 179.97438 * 8 7 6 11 11 C 1.53142 * 108.88724 * 342.34150 * 10 8 7 12 12 C 1.53154 * 109.60511 * 51.11587 * 11 10 8 13 13 C 1.50808 * 127.52965 * 180.09151 * 7 6 5 14 14 H 1.08998 * 109.75142 * 284.10672 * 13 7 6 15 15 N 1.46896 * 109.71493 * 44.73551 * 13 7 6 16 16 C 1.46904 * 110.99841 * 202.42144 * 15 13 7 17 17 H 1.09003 * 110.42858 * 322.18262 * 16 15 13 18 18 C 1.54269 * 110.48904 * 84.72622 * 16 15 13 19 19 C 1.53869 * 106.59572 * 142.29079 * 18 16 15 20 20 C 1.54266 * 106.59984 * 359.97438 * 19 18 16 21 21 H 1.09000 * 110.48904 * 95.20726 * 20 19 18 22 22 C 1.50706 * 110.48738 * 217.70913 * 20 19 18 23 23 H 1.08006 * 119.99777 * 114.65170 * 22 20 19 24 24 C 1.37878 * 120.00317 * 294.66132 * 22 20 19 25 25 N 1.31510 * 119.99935 * 2.17358 * 24 22 20 26 26 Si 1.86795 * 120.00062 * 182.45266 * 24 22 20 27 27 H 1.48506 * 109.47178 * 264.74037 * 26 24 22 28 28 H 1.48500 * 109.47113 * 24.73637 * 26 24 22 29 29 H 1.48496 * 109.47471 * 144.73762 * 26 24 22 30 30 C 1.54885 * 104.19960 * 336.38965 * 20 19 18 31 31 H 1.09003 * 109.47136 * 59.99858 * 1 2 3 32 32 H 1.08999 * 109.47454 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47181 * 300.00486 * 1 2 3 34 34 H 1.07993 * 127.33252 * 0.02801 * 6 5 3 35 35 H 1.08998 * 109.56325 * 222.51874 * 10 8 7 36 36 H 1.09000 * 109.66594 * 102.22222 * 10 8 7 37 37 H 1.09000 * 109.44847 * 291.07758 * 11 10 8 38 38 H 1.08999 * 109.42713 * 171.14508 * 11 10 8 39 39 H 1.09005 * 109.54093 * 170.52870 * 12 11 10 40 40 H 1.08998 * 109.53771 * 50.27577 * 12 11 10 41 41 H 1.00893 * 111.00348 * 78.46487 * 15 13 7 42 42 H 1.09004 * 110.03030 * 23.00596 * 18 16 15 43 43 H 1.09001 * 110.03000 * 261.57253 * 18 16 15 44 44 H 1.09002 * 110.03266 * 240.71203 * 19 18 16 45 45 H 1.08997 * 110.07505 * 119.30801 * 19 18 16 46 46 H 0.96996 * 120.00405 * 180.27677 * 25 24 22 47 47 H 1.08995 * 110.75651 * 156.25238 * 30 20 19 48 48 H 1.08997 * 110.75635 * 279.63359 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2194 -0.0005 5 6 3.5375 1.2777 -0.0006 6 6 4.3195 2.4591 -0.0012 7 6 5.5992 2.0391 -0.0021 8 7 5.5888 0.6840 -0.0032 9 7 4.3766 0.2598 -0.0015 10 6 6.8025 -0.1454 -0.0050 11 6 7.9904 0.7153 -0.4450 12 6 8.0321 1.9987 0.3898 13 6 6.8450 2.8890 -0.0011 14 1 7.0081 3.3047 -0.9955 15 7 6.7010 3.9783 0.9739 16 6 7.5989 5.0954 0.6515 17 1 8.5532 4.7216 0.2804 18 6 6.9452 6.0314 -0.3860 19 6 7.3406 7.4660 0.0056 20 6 8.2201 7.3517 1.2678 21 1 9.2762 7.3465 0.9978 22 6 7.9262 8.4825 2.2197 23 1 7.4871 8.2758 3.1846 24 6 8.2176 9.7809 1.8588 25 7 8.7123 10.0370 0.6675 26 14 7.9170 11.1754 3.0647 27 1 6.5871 11.7810 2.7997 28 1 7.9523 10.6465 4.4519 29 1 8.9722 12.2073 2.9014 30 6 7.8112 5.9955 1.8944 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 3.9650 3.4792 -0.0008 35 1 6.6762 -0.9757 -0.6997 36 1 6.9838 -0.5326 0.9976 37 1 7.8824 0.9713 -1.4990 38 1 8.9156 0.1577 -0.2998 39 1 8.9647 2.5291 0.1967 40 1 7.9667 1.7473 1.4484 41 1 6.8599 3.6461 1.9132 42 1 5.8611 5.9218 -0.3571 43 1 7.3179 5.8007 -1.3840 44 1 6.4484 8.0526 0.2245 45 1 7.9048 7.9323 -0.8021 46 1 8.9210 10.9499 0.4150 47 1 8.6108 5.6036 2.5229 48 1 6.8859 6.0956 2.4618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886617533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:22 Heat of formation + Delta-G solvation = -36.056618 kcal Electronic energy + Delta-G solvation = -28705.449081 eV Core-core repulsion = 24760.576388 eV Total energy + Delta-G solvation = -3944.872693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.91127 -41.25670 -39.62792 -37.79947 -37.51932 -35.65727 -34.24525 -32.30986 -31.64517 -29.86248 -29.36995 -28.75520 -27.57423 -25.66098 -25.13127 -23.97732 -23.09710 -21.75468 -21.22959 -20.58066 -20.30995 -18.41876 -18.24386 -18.08278 -17.67424 -17.41553 -16.93480 -16.75504 -16.52955 -16.16084 -15.61108 -15.34342 -15.00437 -14.76414 -14.51306 -14.39660 -14.18371 -14.00964 -13.88867 -13.43566 -13.09613 -13.05493 -12.97135 -12.89803 -12.65689 -12.35568 -12.18172 -12.10981 -11.97956 -11.91035 -11.84992 -11.81479 -11.62126 -11.54884 -11.35697 -10.92254 -10.69323 -10.43904 -10.19098 -10.03054 -9.30070 -8.10117 -6.18261 0.18774 1.01479 1.26152 1.40653 1.42257 1.52130 1.79640 2.03576 2.44898 3.04287 3.21275 3.27049 3.54113 3.69910 3.76554 3.90667 4.04490 4.15825 4.22759 4.28551 4.30735 4.32865 4.33213 4.40875 4.43998 4.62822 4.68532 4.72864 4.78247 4.80675 4.93078 4.98352 5.03805 5.07421 5.16599 5.17910 5.21095 5.22140 5.30180 5.32151 5.49129 5.54501 5.70514 5.72562 5.95358 6.03680 6.23223 6.44713 6.49507 6.54278 6.88471 6.93711 7.48769 8.99017 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.002614 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.553296 B =10707.430749 C =12223.134089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.558 3.442 4 O -0.528 6.528 5 C -0.042 4.042 6 C -0.160 4.160 7 C 0.031 3.969 8 N -0.264 5.264 9 N -0.241 5.241 10 C 0.109 3.891 11 C -0.124 4.124 12 C -0.155 4.155 13 C 0.160 3.840 14 H 0.101 0.899 15 N -0.676 5.676 16 C 0.104 3.896 17 H 0.060 0.940 18 C -0.107 4.107 19 C -0.088 4.088 20 C 0.041 3.959 21 H 0.003 0.997 22 C -0.529 4.529 23 H 0.051 0.949 24 C 0.010 3.990 25 N -0.920 5.920 26 Si 0.948 3.052 27 H -0.280 1.280 28 H -0.267 1.267 29 H -0.283 1.283 30 C -0.104 4.104 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.064 0.936 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.349 0.651 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.020 0.980 45 H 0.027 0.973 46 H 0.259 0.741 47 H 0.059 0.941 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -26.641 -3.274 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.401 3.599 4 O -0.415 6.415 5 C -0.197 4.197 6 C -0.188 4.188 7 C -0.092 4.092 8 N -0.056 5.056 9 N -0.079 5.079 10 C -0.009 4.009 11 C -0.162 4.162 12 C -0.194 4.194 13 C 0.049 3.951 14 H 0.118 0.882 15 N -0.307 5.307 16 C -0.006 4.006 17 H 0.078 0.922 18 C -0.145 4.145 19 C -0.127 4.127 20 C 0.022 3.978 21 H 0.021 0.979 22 C -0.567 4.567 23 H 0.069 0.931 24 C -0.188 4.188 25 N -0.560 5.560 26 Si 0.775 3.225 27 H -0.206 1.206 28 H -0.191 1.191 29 H -0.209 1.209 30 C -0.142 4.142 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.083 0.917 34 H 0.171 0.829 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.169 0.831 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.599 -27.183 -3.687 27.814 hybrid contribution 0.144 2.051 0.719 2.178 sum -4.455 -25.132 -2.967 25.695 Atomic orbital electron populations 1.23656 0.73960 1.06071 1.02855 1.86618 1.25426 1.31132 1.83605 1.19733 0.86592 0.81681 0.71845 1.90852 1.66111 1.36999 1.47564 1.20771 0.90832 0.91885 1.16262 1.21295 0.91236 0.98744 1.07541 1.21373 0.97065 0.84356 1.06451 1.46339 1.05220 1.05474 1.48609 1.73474 0.90430 1.26362 1.17670 1.22707 0.78252 0.93767 1.06145 1.21915 0.97888 0.95575 1.00846 1.22488 0.98914 0.96720 1.01303 1.20186 0.87796 0.89161 0.98005 0.88160 1.60300 1.56615 1.07964 1.05832 1.22182 0.92997 0.89758 0.95620 0.92169 1.22175 1.00326 0.94325 0.97704 1.21858 0.98038 0.94503 0.98264 1.19377 0.93732 0.91971 0.92687 0.97917 1.21575 1.40606 0.92484 1.02021 0.93073 1.25737 0.95208 1.01206 0.96669 1.70087 1.45187 1.20178 1.20510 0.85688 0.77630 0.79347 0.79877 1.20643 1.19125 1.20869 1.22535 1.00029 0.95382 0.96269 0.91608 0.84506 0.91712 0.82865 0.86148 0.86911 0.90203 0.85289 0.89097 0.90337 0.83129 0.92156 0.92284 0.96084 0.95432 0.93237 0.92260 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.67 10.58 -56.43 -0.60 -9.27 16 3 C 0.56 16.54 7.97 70.29 0.56 17.10 16 4 O -0.53 -17.98 16.72 19.86 0.33 -17.65 16 5 C -0.04 -1.23 7.17 42.45 0.30 -0.92 16 6 C -0.16 -4.61 10.57 22.30 0.24 -4.38 16 7 C 0.03 0.73 6.27 41.21 0.26 0.99 16 8 N -0.26 -5.32 3.74 -333.31 -1.25 -6.57 16 9 N -0.24 -6.17 12.04 -48.10 -0.58 -6.75 16 10 C 0.11 1.06 7.17 86.33 0.62 1.68 16 11 C -0.12 -0.88 5.91 30.69 0.18 -0.70 16 12 C -0.16 -1.92 5.25 30.80 0.16 -1.75 16 13 C 0.16 3.18 2.67 44.35 0.12 3.29 16 14 H 0.10 2.07 7.71 -2.39 -0.02 2.06 16 15 N -0.68 -16.98 5.89 -466.81 -2.75 -19.73 16 16 C 0.10 3.14 2.98 46.00 0.14 3.28 16 17 H 0.06 1.64 7.30 -2.39 -0.02 1.63 16 18 C -0.11 -3.84 6.26 31.32 0.20 -3.64 16 19 C -0.09 -4.15 5.56 31.32 0.17 -3.97 16 20 C 0.04 2.02 2.74 -10.46 -0.03 2.00 16 21 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 22 C -0.53 -29.28 8.36 25.60 0.21 -29.06 16 23 H 0.05 2.80 7.77 -2.91 -0.02 2.77 16 24 C 0.01 0.58 5.36 84.66 0.45 1.03 16 25 N -0.92 -54.14 12.55 21.45 0.27 -53.87 16 26 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 29 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 30 C -0.10 -3.95 5.71 31.89 0.18 -3.77 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.15 4.80 8.06 -2.91 -0.02 4.78 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 38 H 0.13 0.19 8.14 -2.39 -0.02 0.18 16 39 H 0.09 1.08 7.61 -2.38 -0.02 1.06 16 40 H 0.08 0.93 7.90 -2.39 -0.02 0.92 16 41 H 0.35 8.11 8.12 -89.70 -0.73 7.38 16 42 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 44 H 0.02 1.07 7.83 -2.39 -0.02 1.05 16 45 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 46 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 2.25 8.05 -2.39 -0.02 2.23 16 Total: -1.00 -72.48 388.99 2.66 -69.82 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.23 Total: 14.82 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 4.97 Total: -17.20 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.30 Total: -86.91 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.26 Total: -26.92 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -72.48 2.66 -69.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886617533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.766 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds