Wall clock time and date at job start Tue Mar 31 2020 17:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34727 * 117.00256 * 2 1 4 4 O 1.21499 * 119.99898 * 0.02562 * 3 2 1 5 5 C 1.47582 * 120.00543 * 180.02562 * 3 2 1 6 6 C 1.41686 * 126.50522 * 179.71564 * 5 3 2 7 7 C 1.34692 * 105.33396 * 179.85271 * 6 5 3 8 8 N 1.35513 * 107.72284 * 0.38598 * 7 6 5 9 9 N 1.28423 * 109.73186 * 359.76458 * 8 7 6 10 10 C 1.46997 * 123.89860 * 179.78119 * 8 7 6 11 11 C 1.53153 * 108.88774 * 17.66632 * 10 8 7 12 12 C 1.53160 * 109.59307 * 308.87725 * 11 10 8 13 13 C 1.50792 * 127.52353 * 180.02562 * 7 6 5 14 14 H 1.08998 * 109.72141 * 76.23280 * 13 7 6 15 15 N 1.46900 * 109.72048 * 315.57993 * 13 7 6 16 16 C 1.46896 * 111.00230 * 85.00304 * 15 13 7 17 17 H 1.09005 * 110.01472 * 325.70264 * 16 15 13 18 18 C 1.53878 * 110.03413 * 87.09144 * 16 15 13 19 19 C 1.54265 * 106.59867 * 119.28617 * 18 16 15 20 20 C 1.54894 * 104.19269 * 23.61304 * 19 18 16 21 21 H 1.09004 * 110.75441 * 80.55912 * 20 19 18 22 22 C 1.50695 * 110.75272 * 203.73888 * 20 19 18 23 23 H 1.08002 * 120.00060 * 118.54955 * 22 20 19 24 24 C 1.37880 * 120.00543 * 298.54645 * 22 20 19 25 25 N 1.31511 * 119.99464 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 120.00374 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46640 * 90.00127 * 26 24 22 28 28 H 1.48494 * 109.47273 * 210.00110 * 26 24 22 29 29 H 1.48502 * 109.46988 * 330.00433 * 26 24 22 30 30 C 1.54262 * 110.03830 * 204.31153 * 16 15 13 31 31 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 32 32 H 1.09001 * 109.46782 * 299.99697 * 1 2 3 33 33 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 34 34 H 1.07996 * 127.33005 * 359.97438 * 6 5 3 35 35 H 1.09007 * 109.56579 * 137.45195 * 10 8 7 36 36 H 1.09000 * 109.56741 * 257.80136 * 10 8 7 37 37 H 1.08993 * 109.44676 * 188.84391 * 11 10 8 38 38 H 1.08999 * 109.46687 * 68.91587 * 11 10 8 39 39 H 1.09001 * 109.53560 * 309.73666 * 12 11 10 40 40 H 1.08997 * 109.53720 * 189.47886 * 12 11 10 41 41 H 1.00901 * 110.99939 * 321.04787 * 15 13 7 42 42 H 1.08998 * 110.03475 * 238.57428 * 18 16 15 43 43 H 1.09002 * 110.03088 * 359.95267 * 18 16 15 44 44 H 1.08996 * 110.48282 * 142.28761 * 19 18 16 45 45 H 1.08998 * 110.48894 * 264.93381 * 19 18 16 46 46 H 0.97009 * 119.99750 * 179.97438 * 25 24 22 47 47 H 1.09007 * 110.48438 * 335.78626 * 30 16 15 48 48 H 1.09002 * 110.48814 * 98.42023 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5375 1.2777 -0.0006 6 6 4.3195 2.4592 -0.0063 7 6 5.5993 2.0392 -0.0011 8 7 5.5888 0.6841 -0.0015 9 7 4.3766 0.2599 -0.0016 10 6 6.8025 -0.1452 -0.0014 11 6 7.9907 0.7151 0.4390 12 6 8.0318 1.9993 -0.3946 13 6 6.8449 2.8891 -0.0034 14 1 7.0089 3.3039 0.9912 15 7 6.6997 3.9788 -0.9778 16 6 5.9976 5.1250 -0.3852 17 1 5.2486 4.7766 0.3260 18 6 7.0032 6.0520 0.3200 19 6 6.9081 7.4216 -0.3834 20 6 5.4934 7.4273 -1.0141 21 1 4.7394 7.6817 -0.2692 22 6 5.4323 8.3805 -2.1798 23 1 5.2044 8.0104 -3.1685 24 6 5.6672 9.7250 -1.9841 25 7 5.9451 10.1755 -0.7803 26 14 5.5921 10.9063 -3.4292 27 1 4.2075 11.4231 -3.5745 28 1 6.5211 12.0399 -3.1907 29 1 5.9877 10.1948 -4.6712 30 6 5.3255 5.9630 -1.4923 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.9650 3.4792 -0.0115 35 1 6.6768 -0.9761 0.6929 36 1 6.9818 -0.5300 -1.0053 37 1 8.9159 0.1578 0.2929 38 1 7.8836 0.9701 1.4933 39 1 7.9655 1.7489 -1.4534 40 1 8.9644 2.5294 -0.2016 41 1 6.2298 3.6583 -1.8112 42 1 6.7418 6.1542 1.3732 43 1 8.0121 5.6509 0.2232 44 1 7.0061 8.2301 0.3410 45 1 7.6711 7.5069 -1.1572 46 1 6.1107 11.1213 -0.6427 47 1 5.8324 5.8126 -2.4455 48 1 4.2693 5.7071 -1.5764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886617534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:25 Heat of formation + Delta-G solvation = -14.134365 kcal Electronic energy + Delta-G solvation = -29131.389498 eV Core-core repulsion = 25187.467425 eV Total energy + Delta-G solvation = -3943.922073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.06212 -40.23786 -38.25278 -36.78379 -36.45954 -34.59170 -32.39305 -31.21939 -30.39346 -28.71472 -28.06467 -27.94452 -26.10936 -24.43255 -23.59796 -22.95970 -22.34644 -20.83598 -19.73942 -19.12025 -19.00677 -17.43944 -17.31070 -16.73667 -16.55023 -16.38628 -16.08829 -15.26334 -15.04282 -14.63248 -14.59567 -14.26395 -14.12936 -13.74300 -13.59327 -13.32413 -13.11078 -12.55664 -12.33534 -12.30742 -12.10777 -12.08227 -11.54477 -11.36248 -11.30003 -11.02635 -10.94484 -10.93784 -10.84317 -10.75998 -10.52679 -10.45240 -10.00164 -9.87891 -9.39923 -9.34499 -9.25092 -9.05915 -8.70299 -8.30003 -8.21464 -5.93508 -3.95763 1.20125 1.89195 2.05117 2.64233 3.05791 3.35395 3.41931 3.45313 3.92205 4.10037 4.32346 4.44758 4.47997 4.50523 4.58918 4.85344 4.92555 5.00953 5.04184 5.09548 5.22237 5.27232 5.33300 5.36638 5.38352 5.41251 5.56849 5.72953 5.74307 5.84523 5.92326 5.97899 6.12653 6.24687 6.36098 6.51973 6.54413 6.64613 6.81108 6.92630 7.04896 7.16303 7.39080 7.49468 7.53544 7.60142 7.81807 7.83319 7.99853 8.12030 8.53146 9.06170 9.67762 11.15701 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.003113 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.919367 B = 8992.942424 C =10908.331498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.556 3.444 4 O -0.494 6.494 5 C -0.011 4.011 6 C -0.166 4.166 7 C -0.010 4.010 8 N -0.272 5.272 9 N -0.235 5.235 10 C 0.120 3.880 11 C -0.136 4.136 12 C -0.115 4.115 13 C 0.155 3.845 14 H 0.101 0.899 15 N -0.660 5.660 16 C 0.077 3.923 17 H 0.042 0.958 18 C -0.117 4.117 19 C -0.096 4.096 20 C 0.052 3.948 21 H 0.028 0.972 22 C -0.511 4.511 23 H 0.054 0.946 24 C 0.062 3.938 25 N -0.890 5.890 26 Si 0.888 3.112 27 H -0.282 1.282 28 H -0.288 1.288 29 H -0.275 1.275 30 C -0.119 4.119 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.343 0.657 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.258 0.742 47 H 0.064 0.936 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -24.084 4.111 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.263 6.263 3 C 0.398 3.602 4 O -0.379 6.379 5 C -0.168 4.168 6 C -0.193 4.193 7 C -0.134 4.134 8 N -0.063 5.063 9 N -0.072 5.072 10 C 0.001 3.999 11 C -0.175 4.175 12 C -0.154 4.154 13 C 0.043 3.957 14 H 0.118 0.882 15 N -0.290 5.290 16 C -0.032 4.032 17 H 0.060 0.940 18 C -0.155 4.155 19 C -0.135 4.135 20 C 0.034 3.966 21 H 0.046 0.954 22 C -0.549 4.549 23 H 0.072 0.928 24 C -0.139 4.139 25 N -0.529 5.529 26 Si 0.716 3.284 27 H -0.208 1.208 28 H -0.214 1.214 29 H -0.200 1.200 30 C -0.157 4.157 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.186 0.814 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.932 -24.587 4.316 25.037 hybrid contribution -1.294 1.160 -0.705 1.875 sum 0.638 -23.427 3.611 23.712 Atomic orbital electron populations 1.23313 0.75976 1.03728 1.02803 1.86624 1.23367 1.32162 1.84163 1.19587 0.86302 0.81620 0.72707 1.90903 1.65384 1.35980 1.45585 1.20661 0.90686 0.91184 1.14275 1.21504 0.90389 0.99543 1.07897 1.22646 0.98674 0.84801 1.07318 1.45923 1.04832 1.05402 1.50145 1.73508 0.89764 1.26675 1.17291 1.22237 0.79800 0.93511 1.04349 1.21976 0.96955 0.96968 1.01600 1.21709 0.99146 0.94199 1.00304 1.20463 0.87602 0.89238 0.98424 0.88152 1.60968 1.55862 1.05592 1.06572 1.22475 0.94158 0.89800 0.96753 0.94018 1.22309 0.97946 0.97524 0.97750 1.22234 0.99707 0.92815 0.98723 1.19523 0.93143 0.88669 0.95304 0.95416 1.21126 1.47522 0.92025 0.94223 0.92786 1.24963 0.95254 0.98253 0.95457 1.69963 1.48172 1.14191 1.20551 0.86663 0.77759 0.80818 0.83150 1.20818 1.21355 1.19983 1.22668 0.97622 0.98382 0.97015 0.91671 0.91714 0.87979 0.81444 0.88120 0.88667 0.88368 0.90315 0.90829 0.89281 0.83836 0.93739 0.92417 0.91640 0.93442 0.93205 0.91744 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.50 10.58 -40.57 -0.43 -4.93 16 3 C 0.56 8.41 7.97 34.54 0.28 8.69 16 4 O -0.49 -8.51 16.72 -19.27 -0.32 -8.83 16 5 C -0.01 -0.17 7.17 -82.71 -0.59 -0.76 16 6 C -0.17 -2.43 9.80 -39.52 -0.39 -2.82 16 7 C -0.01 -0.12 6.01 -82.18 -0.49 -0.61 16 8 N -0.27 -3.09 3.74 -56.71 -0.21 -3.30 16 9 N -0.23 -3.23 12.04 33.44 0.40 -2.82 16 10 C 0.12 0.82 7.17 -3.69 -0.03 0.79 16 11 C -0.14 -0.76 5.92 -26.57 -0.16 -0.92 16 12 C -0.12 -0.94 5.60 -26.43 -0.15 -1.08 16 13 C 0.16 1.75 2.69 -68.60 -0.18 1.56 16 14 H 0.10 1.17 7.77 -51.93 -0.40 0.76 16 15 N -0.66 -9.16 5.85 -99.51 -0.58 -9.74 16 16 C 0.08 1.30 2.64 -66.60 -0.18 1.12 16 17 H 0.04 0.70 5.70 -51.93 -0.30 0.40 16 18 C -0.12 -2.15 6.43 -25.61 -0.16 -2.31 16 19 C -0.10 -2.23 5.57 -25.07 -0.14 -2.37 16 20 C 0.05 1.30 2.82 -89.74 -0.25 1.04 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.51 -14.11 8.54 -34.44 -0.29 -14.40 16 23 H 0.05 1.48 7.78 -52.49 -0.41 1.07 16 24 C 0.06 1.74 5.33 -17.82 -0.10 1.64 16 25 N -0.89 -25.71 12.02 55.43 0.67 -25.05 16 26 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 30 C -0.12 -2.41 5.68 -25.04 -0.14 -2.55 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.17 2.62 6.34 -52.49 -0.33 2.28 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 39 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.34 4.78 8.09 -39.29 -0.32 4.46 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 44 H 0.06 1.66 7.37 -51.93 -0.38 1.27 16 45 H 0.05 1.15 8.04 -51.93 -0.42 0.73 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.06 1.33 7.87 -51.92 -0.41 0.92 16 48 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -32.34 384.54 -9.20 -41.54 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.58 Total: 2.40 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.91 Total: -11.59 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.27 Total: -40.92 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.75 Total: -13.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.34 -9.20 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886617534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.407 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds