Wall clock time and date at job start Tue Mar 31 2020 17:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35904 * 117.00119 * 2 1 4 4 C 1.38733 * 120.05337 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94198 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05559 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.94298 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.78944 * 3.55436 * 7 6 5 9 9 C 1.53242 * 109.63222 * 243.06587 * 7 6 5 10 10 N 1.46893 * 109.34230 * 186.46081 * 9 7 6 11 11 C 1.47332 * 111.36635 * 63.12479 * 10 9 7 12 12 C 1.53239 * 109.11128 * 296.99537 * 11 10 9 13 13 N 1.47083 * 108.68243 * 53.74951 * 12 11 10 14 14 C 1.34773 * 120.88234 * 128.69442 * 13 12 11 15 15 O 1.21584 * 120.00490 * 174.63247 * 14 13 12 16 16 N 1.34781 * 119.99644 * 354.63272 * 14 13 12 17 17 C 1.46499 * 119.99544 * 185.13950 * 16 14 13 18 18 C 1.52999 * 109.47192 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47469 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00023 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00314 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00099 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47163 * 89.99853 * 23 21 19 25 25 H 1.48504 * 109.47138 * 209.99781 * 23 21 19 26 26 H 1.48497 * 109.47144 * 329.99717 * 23 21 19 27 27 C 1.38268 * 120.11188 * 0.27311 * 6 5 4 28 28 C 1.38146 * 120.05229 * 359.45409 * 27 6 5 29 29 H 1.08999 * 109.47689 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47223 * 300.00367 * 1 2 3 31 31 H 1.09000 * 109.47082 * 60.00149 * 1 2 3 32 32 H 1.07994 * 120.03078 * 359.94735 * 4 3 2 33 33 H 1.07999 * 119.97330 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.49240 * 306.42378 * 9 7 6 35 35 H 1.09007 * 109.48836 * 66.50384 * 9 7 6 36 36 H 1.00902 * 111.00132 * 298.95593 * 10 9 7 37 37 H 1.09006 * 109.75223 * 177.01775 * 11 10 9 38 38 H 1.08997 * 109.45972 * 56.79728 * 11 10 9 39 39 H 1.09001 * 109.62700 * 293.94443 * 12 11 10 40 40 H 1.08999 * 109.62574 * 173.55618 * 12 11 10 41 41 H 0.96997 * 120.00178 * 5.14019 * 16 14 13 42 42 H 1.08999 * 109.47330 * 299.99694 * 17 16 14 43 43 H 1.08994 * 109.47364 * 59.99914 * 17 16 14 44 44 H 1.09003 * 109.47208 * 299.99972 * 18 17 16 45 45 H 1.09004 * 109.46937 * 59.99778 * 18 17 16 46 46 H 0.96997 * 120.00340 * 180.02562 * 22 21 19 47 47 H 1.07997 * 119.97180 * 179.70408 * 27 6 5 48 48 H 1.07997 * 120.02951 * 180.28050 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0184 -0.0016 8 1 5.0658 4.8824 -0.0647 9 6 3.6368 5.7743 1.2849 10 7 4.1779 7.1378 1.2102 11 6 3.5623 7.9001 0.1099 12 6 3.9093 7.2270 -1.2223 13 7 3.5200 5.8105 -1.1500 14 6 2.7559 5.2532 -2.1102 15 8 2.5244 4.0598 -2.0867 16 7 2.2484 6.0188 -3.0965 17 6 1.3273 5.4363 -4.0755 18 6 0.9036 6.5105 -5.0792 19 6 -0.0435 5.9112 -6.0866 20 1 -0.3162 4.8685 -6.0177 21 6 -0.5626 6.6944 -7.0957 22 7 -1.3894 6.1715 -7.9747 23 14 -0.0913 8.4981 -7.2145 24 1 1.1176 8.6388 -8.0653 25 1 -1.2122 9.2639 -7.8166 26 1 0.1951 9.0253 -5.8562 27 6 1.9211 3.6048 0.0041 28 6 1.2915 2.3751 -0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0208 0.3799 -0.0001 33 1 5.1345 2.5749 -0.0019 34 1 2.5537 5.8184 1.3981 35 1 4.0716 5.2568 2.1401 36 1 5.1830 7.1237 1.1214 37 1 3.9429 8.9216 0.1113 38 1 2.4802 7.9146 0.2391 39 1 4.9816 7.3032 -1.4027 40 1 3.3662 7.7152 -2.0315 41 1 2.4931 6.9553 -3.1582 42 1 1.8248 4.6226 -4.6033 43 1 0.4467 5.0511 -3.5615 44 1 0.4061 7.3245 -4.5518 45 1 1.7845 6.8952 -5.5931 46 1 -1.7543 6.7224 -8.6848 47 1 1.3342 4.5114 0.0085 48 1 0.2129 2.3202 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891768840.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:14 Heat of formation + Delta-G solvation = -6.599717 kcal Electronic energy + Delta-G solvation = -29574.643934 eV Core-core repulsion = 25631.048588 eV Total energy + Delta-G solvation = -3943.595346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01567 -39.63385 -37.98273 -37.23467 -35.01410 -33.67694 -32.95058 -32.18758 -30.86478 -29.94698 -29.12240 -27.27621 -26.11511 -24.74908 -23.83088 -22.77995 -21.79268 -21.39153 -20.71293 -19.59296 -18.15510 -17.91963 -16.93823 -16.42389 -15.97846 -15.78614 -15.64968 -15.48249 -15.05020 -14.76460 -14.51508 -14.40991 -14.17334 -14.04186 -13.70238 -13.55124 -13.35913 -13.05050 -12.95782 -12.60702 -12.50374 -12.20862 -11.93698 -11.66393 -11.52212 -11.48691 -11.30636 -11.24045 -11.06985 -10.65038 -10.42283 -10.18841 -9.99136 -9.72277 -9.41612 -9.35252 -8.86801 -8.64312 -8.35967 -8.22128 -7.49830 -6.13293 -4.13392 1.57612 1.65853 2.72417 3.22523 3.29870 3.31108 3.38043 3.44401 3.83488 3.96936 4.15337 4.35117 4.52632 4.68481 4.75710 4.82883 4.89695 4.97850 5.02345 5.08602 5.13564 5.19409 5.19543 5.33863 5.38613 5.45317 5.48767 5.61539 5.65185 5.72209 5.88210 6.01289 6.20516 6.21598 6.32439 6.41822 6.54433 6.55361 6.56999 6.76174 6.79877 6.92364 6.94094 7.00209 7.20340 7.22616 7.55283 7.65047 8.19131 8.42844 8.86998 8.91633 9.46778 10.99807 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.003715 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.348976 B = 7535.145972 C = 9907.162637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.127 3.873 4 C -0.161 4.161 5 C -0.075 4.075 6 C -0.093 4.093 7 C 0.173 3.827 8 H 0.074 0.926 9 C 0.051 3.949 10 N -0.683 5.683 11 C 0.042 3.958 12 C 0.073 3.927 13 N -0.635 5.635 14 C 0.696 3.304 15 O -0.558 6.558 16 N -0.744 5.744 17 C 0.150 3.850 18 C -0.020 4.020 19 C -0.522 4.522 20 H 0.075 0.925 21 C 0.070 3.930 22 N -0.898 5.898 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.267 1.267 27 C -0.001 4.001 28 C -0.208 4.208 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.342 0.658 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.388 0.612 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.016 0.984 46 H 0.265 0.735 47 H 0.106 0.894 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.690 -0.922 21.522 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.082 3.918 4 C -0.179 4.179 5 C -0.094 4.094 6 C -0.095 4.095 7 C 0.068 3.932 8 H 0.092 0.908 9 C -0.079 4.079 10 N -0.310 5.310 11 C -0.088 4.088 12 C -0.053 4.053 13 N -0.375 5.375 14 C 0.398 3.602 15 O -0.436 6.436 16 N -0.400 5.400 17 C 0.027 3.973 18 C -0.058 4.058 19 C -0.560 4.560 20 H 0.093 0.907 21 C -0.132 4.132 22 N -0.536 5.536 23 Si 0.709 3.291 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.192 1.192 27 C -0.020 4.020 28 C -0.227 4.227 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.159 0.841 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.223 0.777 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.075 0.925 47 H 0.124 0.876 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.001 -1.690 21.828 24.502 hybrid contribution 0.388 1.259 -1.417 1.935 sum 11.390 -0.430 20.411 23.377 Atomic orbital electron populations 1.22999 0.78694 1.03478 1.01440 1.86012 1.21179 1.27459 1.89046 1.18911 0.92270 0.83790 0.96820 1.20100 0.91223 0.97993 1.08624 1.20466 0.98681 0.91039 0.99191 1.19079 0.93684 0.92910 1.03804 1.20606 0.97396 0.89058 0.86131 0.90781 1.22532 1.01771 0.87922 0.95696 1.60727 1.10499 1.14432 1.45386 1.22513 1.01171 0.97379 0.87771 1.22379 1.00640 0.82113 1.00120 1.47410 1.56010 1.10329 1.23715 1.16037 0.78843 0.85446 0.79861 1.91067 1.64029 1.12653 1.75806 1.45815 1.50625 1.13177 1.30355 1.21334 0.90527 0.97183 0.88221 1.19782 0.96786 0.94786 0.94477 1.20901 1.26254 0.98724 1.10138 0.90651 1.24993 0.94520 0.98478 0.95230 1.69901 1.31441 1.36513 1.15795 0.86756 0.78300 0.85446 0.78583 1.20231 1.21241 1.19159 1.20318 0.93487 0.96314 0.91890 1.20950 0.99433 0.92305 1.10041 0.88614 0.92966 0.92480 0.86021 0.86380 0.90137 0.89183 0.84078 0.89249 0.90179 0.91442 0.89631 0.77715 0.92193 0.92422 0.96186 0.96589 0.92538 0.87560 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.53 10.50 -19.44 -0.20 -4.73 16 3 C 0.13 1.89 6.69 -39.22 -0.26 1.63 16 4 C -0.16 -2.24 9.99 -39.43 -0.39 -2.63 16 5 C -0.07 -0.97 9.67 -39.60 -0.38 -1.35 16 6 C -0.09 -1.23 3.03 -104.60 -0.32 -1.55 16 7 C 0.17 1.86 3.22 -68.64 -0.22 1.64 16 8 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 9 C 0.05 0.45 5.92 -3.70 -0.02 0.43 16 10 N -0.68 -5.22 6.86 -113.18 -0.78 -5.99 16 11 C 0.04 0.32 6.74 -3.46 -0.02 0.30 16 12 C 0.07 0.64 6.56 -3.60 -0.02 0.62 16 13 N -0.63 -7.67 3.00 -171.92 -0.52 -8.19 16 14 C 0.70 11.34 7.49 -86.92 -0.65 10.69 16 15 O -0.56 -10.82 11.44 5.29 0.06 -10.75 16 16 N -0.74 -12.33 5.47 -65.23 -0.36 -12.69 16 17 C 0.15 3.08 5.62 -4.04 -0.02 3.06 16 18 C -0.02 -0.47 4.16 -27.88 -0.12 -0.58 16 19 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 20 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 23 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 27 C 0.00 -0.02 5.83 -39.60 -0.23 -0.25 16 28 C -0.21 -3.07 9.01 -39.43 -0.36 -3.42 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 31 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.23 7.95 -52.49 -0.42 0.82 16 34 H 0.08 0.81 7.38 -51.93 -0.38 0.43 16 35 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.34 2.10 8.84 -39.29 -0.35 1.76 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.75 5.63 -51.93 -0.29 0.46 16 41 H 0.39 5.48 5.97 -40.82 -0.24 5.24 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 45 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.11 1.56 7.41 -52.49 -0.39 1.17 16 48 H 0.12 1.59 6.30 -52.49 -0.33 1.26 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -33.62 377.12 -9.81 -43.43 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.34 Total: 6.67 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.46 Total: -3.18 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.87 Total: -53.39 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.14 Total: -15.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.62 -9.81 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891768840.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.832 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds