Wall clock time and date at job start Tue Mar 31 2020 17:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35904 * 117.00119 * 2 1 4 4 C 1.38733 * 120.05337 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94198 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05559 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.94298 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.78944 * 3.55436 * 7 6 5 9 9 C 1.53242 * 109.63222 * 243.06587 * 7 6 5 10 10 N 1.46893 * 109.34230 * 186.46081 * 9 7 6 11 11 C 1.47332 * 111.36635 * 63.12479 * 10 9 7 12 12 C 1.53239 * 109.11128 * 296.99537 * 11 10 9 13 13 N 1.47083 * 108.68243 * 53.74951 * 12 11 10 14 14 C 1.34773 * 120.88234 * 128.69442 * 13 12 11 15 15 O 1.21584 * 120.00490 * 174.63247 * 14 13 12 16 16 N 1.34781 * 119.99644 * 354.63272 * 14 13 12 17 17 C 1.46499 * 119.99544 * 185.13950 * 16 14 13 18 18 C 1.52999 * 109.47192 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47469 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00023 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00314 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00099 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47163 * 89.99853 * 23 21 19 25 25 H 1.48504 * 109.47138 * 209.99781 * 23 21 19 26 26 H 1.48497 * 109.47144 * 329.99717 * 23 21 19 27 27 C 1.38268 * 120.11188 * 0.27311 * 6 5 4 28 28 C 1.38146 * 120.05229 * 359.45409 * 27 6 5 29 29 H 1.08999 * 109.47689 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47223 * 300.00367 * 1 2 3 31 31 H 1.09000 * 109.47082 * 60.00149 * 1 2 3 32 32 H 1.07994 * 120.03078 * 359.94735 * 4 3 2 33 33 H 1.07999 * 119.97330 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.49240 * 306.42378 * 9 7 6 35 35 H 1.09007 * 109.48836 * 66.50384 * 9 7 6 36 36 H 1.00902 * 111.00132 * 298.95593 * 10 9 7 37 37 H 1.09006 * 109.75223 * 177.01775 * 11 10 9 38 38 H 1.08997 * 109.45972 * 56.79728 * 11 10 9 39 39 H 1.09001 * 109.62700 * 293.94443 * 12 11 10 40 40 H 1.08999 * 109.62574 * 173.55618 * 12 11 10 41 41 H 0.96997 * 120.00178 * 5.14019 * 16 14 13 42 42 H 1.08999 * 109.47330 * 299.99694 * 17 16 14 43 43 H 1.08994 * 109.47364 * 59.99914 * 17 16 14 44 44 H 1.09003 * 109.47208 * 299.99972 * 18 17 16 45 45 H 1.09004 * 109.46937 * 59.99778 * 18 17 16 46 46 H 0.96997 * 120.00340 * 180.02562 * 22 21 19 47 47 H 1.07997 * 119.97180 * 179.70408 * 27 6 5 48 48 H 1.07997 * 120.02951 * 180.28050 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0184 -0.0016 8 1 5.0658 4.8824 -0.0647 9 6 3.6368 5.7743 1.2849 10 7 4.1779 7.1378 1.2102 11 6 3.5623 7.9001 0.1099 12 6 3.9093 7.2270 -1.2223 13 7 3.5200 5.8105 -1.1500 14 6 2.7559 5.2532 -2.1102 15 8 2.5244 4.0598 -2.0867 16 7 2.2484 6.0188 -3.0965 17 6 1.3273 5.4363 -4.0755 18 6 0.9036 6.5105 -5.0792 19 6 -0.0435 5.9112 -6.0866 20 1 -0.3162 4.8685 -6.0177 21 6 -0.5626 6.6944 -7.0957 22 7 -1.3894 6.1715 -7.9747 23 14 -0.0913 8.4981 -7.2145 24 1 1.1176 8.6388 -8.0653 25 1 -1.2122 9.2639 -7.8166 26 1 0.1951 9.0253 -5.8562 27 6 1.9211 3.6048 0.0041 28 6 1.2915 2.3751 -0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0208 0.3799 -0.0001 33 1 5.1345 2.5749 -0.0019 34 1 2.5537 5.8184 1.3981 35 1 4.0716 5.2568 2.1401 36 1 5.1830 7.1237 1.1214 37 1 3.9429 8.9216 0.1113 38 1 2.4802 7.9146 0.2391 39 1 4.9816 7.3032 -1.4027 40 1 3.3662 7.7152 -2.0315 41 1 2.4931 6.9553 -3.1582 42 1 1.8248 4.6226 -4.6033 43 1 0.4467 5.0511 -3.5615 44 1 0.4061 7.3245 -4.5518 45 1 1.7845 6.8952 -5.5931 46 1 -1.7543 6.7224 -8.6848 47 1 1.3342 4.5114 0.0085 48 1 0.2129 2.3202 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891768840.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:14 Heat of formation + Delta-G solvation = -31.515357 kcal Electronic energy + Delta-G solvation = -29575.724357 eV Core-core repulsion = 25631.048588 eV Total energy + Delta-G solvation = -3944.675769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06235 -40.68358 -39.05419 -38.18793 -36.58291 -34.96242 -34.42436 -33.33090 -31.92011 -31.63987 -30.03265 -28.20312 -27.28896 -26.24237 -24.72675 -23.72205 -22.99706 -22.59477 -22.12580 -20.72928 -19.25314 -19.00635 -18.94557 -17.47116 -17.11962 -16.67830 -16.60230 -16.49469 -16.29783 -16.07459 -15.61294 -15.59431 -15.41289 -15.29654 -14.85807 -14.66843 -14.57267 -14.31480 -14.26277 -13.92298 -13.46128 -13.32971 -13.05591 -12.97581 -12.80854 -12.39531 -12.28913 -12.25421 -12.19849 -12.01337 -11.97925 -11.77783 -11.65497 -11.53071 -10.93900 -10.80653 -10.40796 -9.98503 -9.60169 -9.09601 -8.56721 -8.31741 -6.39321 0.52595 0.58158 1.37114 1.39998 1.51136 1.63962 2.20292 2.35148 2.42938 2.82607 3.03242 3.05913 3.24662 3.74169 3.81566 3.91355 4.00976 4.09916 4.17936 4.19871 4.27504 4.30306 4.32806 4.39641 4.41986 4.47828 4.57118 4.63762 4.70173 4.72490 4.78518 4.83212 4.98812 5.06064 5.11997 5.16741 5.34638 5.38332 5.43565 5.47398 5.49551 5.66403 5.73038 5.88864 5.90485 5.95455 6.20864 6.47662 6.51674 6.67613 7.01242 7.25304 7.63052 8.85212 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.003715 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.348976 B = 7535.145972 C = 9907.162637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.338 6.338 3 C 0.108 3.892 4 C -0.173 4.173 5 C -0.078 4.078 6 C -0.096 4.096 7 C 0.172 3.828 8 H 0.095 0.905 9 C 0.062 3.938 10 N -0.680 5.680 11 C 0.048 3.952 12 C 0.068 3.932 13 N -0.627 5.627 14 C 0.691 3.309 15 O -0.595 6.595 16 N -0.737 5.737 17 C 0.171 3.829 18 C -0.009 4.009 19 C -0.539 4.539 20 H 0.026 0.974 21 C 0.005 3.995 22 N -0.951 5.951 23 Si 0.959 3.041 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.236 1.236 27 C -0.012 4.012 28 C -0.226 4.226 29 H 0.122 0.878 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.355 0.645 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.403 0.597 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.268 0.732 47 H 0.097 0.903 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.343 1.979 23.123 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.252 6.252 3 C 0.063 3.937 4 C -0.192 4.192 5 C -0.097 4.097 6 C -0.098 4.098 7 C 0.068 3.932 8 H 0.113 0.887 9 C -0.069 4.069 10 N -0.309 5.309 11 C -0.082 4.082 12 C -0.056 4.056 13 N -0.365 5.365 14 C 0.393 3.607 15 O -0.475 6.475 16 N -0.395 5.395 17 C 0.046 3.954 18 C -0.047 4.047 19 C -0.577 4.577 20 H 0.044 0.956 21 C -0.192 4.192 22 N -0.591 5.591 23 Si 0.781 3.219 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.159 1.159 27 C -0.031 4.031 28 C -0.245 4.245 29 H 0.140 0.860 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.174 0.826 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.241 0.759 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.704 1.246 23.488 27.222 hybrid contribution -0.464 0.244 -1.883 1.955 sum 13.240 1.490 21.605 25.383 Atomic orbital electron populations 1.23212 0.77195 1.05219 1.01448 1.85981 1.22836 1.27292 1.89118 1.19156 0.92978 0.84033 0.97568 1.20438 0.91144 0.99143 1.08490 1.20834 1.00131 0.90506 0.98198 1.19361 0.93218 0.94473 1.02697 1.20849 0.98063 0.87894 0.86414 0.88680 1.22419 1.00948 0.88512 0.95017 1.60710 1.11467 1.13391 1.45332 1.22511 1.00438 0.98464 0.86816 1.22671 1.01973 0.79880 1.01040 1.47437 1.54553 1.11895 1.22658 1.16202 0.79212 0.84980 0.80328 1.91059 1.65337 1.14367 1.76693 1.45434 1.50213 1.13909 1.29925 1.20752 0.90334 0.95987 0.88304 1.19614 0.96125 0.95223 0.93737 1.21222 1.27550 0.97008 1.11956 0.95558 1.26079 0.94150 1.04527 0.94438 1.70076 1.33155 1.38953 1.16878 0.85537 0.78152 0.77941 0.80234 1.19001 1.21163 1.15910 1.20349 0.94411 0.95740 0.92625 1.21103 0.99802 0.92788 1.10759 0.86011 0.91747 0.93684 0.84818 0.83585 0.91884 0.87600 0.82571 0.86683 0.91755 0.89159 0.89472 0.75930 0.94663 0.94490 0.94613 0.94907 0.92300 0.88510 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.34 -9.77 10.50 -92.47 -0.97 -10.74 16 3 C 0.11 3.30 6.69 22.51 0.15 3.46 16 4 C -0.17 -4.83 9.99 22.37 0.22 -4.60 16 5 C -0.08 -1.93 9.67 22.26 0.22 -1.72 16 6 C -0.10 -2.46 3.03 -19.85 -0.06 -2.52 16 7 C 0.17 3.29 3.22 44.21 0.14 3.43 16 8 H 0.10 1.47 7.90 -2.38 -0.02 1.45 16 9 C 0.06 0.92 5.92 86.39 0.51 1.44 16 10 N -0.68 -7.96 6.86 -511.99 -3.51 -11.47 16 11 C 0.05 0.56 6.74 86.30 0.58 1.14 16 12 C 0.07 0.96 6.56 86.35 0.57 1.53 16 13 N -0.63 -13.79 3.00 -816.11 -2.45 -16.23 16 14 C 0.69 21.98 7.49 179.05 1.34 23.33 16 15 O -0.59 -23.38 11.44 -3.98 -0.05 -23.43 16 16 N -0.74 -23.65 5.47 -478.55 -2.62 -26.27 16 17 C 0.17 7.13 5.62 86.38 0.49 7.62 16 18 C -0.01 -0.41 4.16 29.85 0.12 -0.29 16 19 C -0.54 -31.02 9.66 25.60 0.25 -30.77 16 20 H 0.03 1.71 7.99 -2.91 -0.02 1.68 16 21 C 0.01 0.30 5.47 84.65 0.46 0.76 16 22 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 23 Si 0.96 42.13 27.47 68.60 1.88 44.01 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 27 C -0.01 -0.37 5.83 22.25 0.13 -0.24 16 28 C -0.23 -6.98 9.01 22.37 0.20 -6.78 16 29 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.20 7.66 -2.38 -0.02 1.18 16 31 H 0.04 1.06 7.66 -2.39 -0.02 1.04 16 32 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.15 2.68 7.95 -2.91 -0.02 2.65 16 34 H 0.06 1.19 7.38 -2.39 -0.02 1.18 16 35 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.35 2.79 8.84 -89.69 -0.79 2.00 16 37 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.22 5.63 -2.39 -0.01 1.21 16 41 H 0.40 10.35 5.97 -92.71 -0.55 9.80 16 42 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.50 7.20 -2.39 -0.02 1.49 16 45 H 0.03 1.37 7.57 -2.39 -0.02 1.36 16 46 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 47 H 0.10 2.97 7.41 -2.91 -0.02 2.94 16 48 H 0.12 3.49 6.30 -2.91 -0.02 3.47 16 Total: -1.00 -76.65 377.12 -1.39 -78.04 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.42 Total: 27.84 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 6.44 Total: -2.60 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -8.28 Total: -113.14 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.02 Total: -34.17 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.01 kcal Total: -76.65 -1.39 -78.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891768840.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.527 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds