Wall clock time and date at job start Tue Mar 31 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35903 * 116.99768 * 2 1 4 4 C 1.38729 * 120.05328 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.93927 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.06059 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.94408 * 179.97438 * 6 5 4 8 8 H 1.08991 * 109.63058 * 356.66963 * 7 6 5 9 9 C 1.53243 * 109.78751 * 117.16228 * 7 6 5 10 10 N 1.46903 * 109.33506 * 173.63146 * 9 7 6 11 11 C 1.46894 * 111.27254 * 296.88929 * 10 9 7 12 12 C 1.53238 * 109.33967 * 63.10918 * 11 10 9 13 13 N 1.47080 * 109.62802 * 236.28385 * 7 6 5 14 14 C 1.34781 * 120.88163 * 8.88870 * 13 7 6 15 15 O 1.21591 * 119.99677 * 5.52948 * 14 13 7 16 16 N 1.34769 * 120.00455 * 185.52357 * 14 13 7 17 17 C 1.46497 * 120.00276 * 185.02194 * 16 14 13 18 18 C 1.53004 * 109.47135 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47229 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99476 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00355 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99659 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00287 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47542 * 59.99741 * 23 21 19 25 25 H 1.48503 * 109.47232 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47222 * 299.99786 * 23 21 19 27 27 C 1.38263 * 120.10799 * 0.25413 * 6 5 4 28 28 C 1.38149 * 120.05506 * 359.44884 * 27 6 5 29 29 H 1.09000 * 109.46853 * 60.00624 * 1 2 3 30 30 H 1.09004 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47186 * 299.99704 * 1 2 3 32 32 H 1.07997 * 120.03203 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.97146 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.48814 * 293.58685 * 9 7 6 35 35 H 1.08997 * 109.49463 * 53.67273 * 9 7 6 36 36 H 1.00901 * 111.00538 * 61.04615 * 10 9 7 37 37 H 1.09000 * 109.49244 * 303.15028 * 11 10 9 38 38 H 1.08999 * 109.51735 * 183.08356 * 11 10 9 39 39 H 1.09001 * 109.63443 * 186.46090 * 12 11 10 40 40 H 1.09001 * 109.79112 * 65.97096 * 12 11 10 41 41 H 0.97006 * 119.99903 * 5.03095 * 16 14 13 42 42 H 1.09002 * 109.47476 * 300.00288 * 17 16 14 43 43 H 1.09004 * 109.47260 * 60.00612 * 17 16 14 44 44 H 1.08994 * 109.47128 * 300.00548 * 18 17 16 45 45 H 1.08998 * 109.46891 * 60.00475 * 18 17 16 46 46 H 0.96999 * 119.99510 * 179.97438 * 22 21 19 47 47 H 1.08000 * 119.97283 * 179.70985 * 27 6 5 48 48 H 1.08002 * 120.02897 * 180.29818 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6759 0.0016 7 6 3.9859 5.0186 0.0028 8 1 5.0653 4.8795 0.0627 9 6 3.6354 5.7806 -1.2798 10 7 4.1803 7.1425 -1.2007 11 6 3.5701 7.8975 -0.0982 12 6 3.9178 7.2223 1.2328 13 7 3.5247 5.8071 1.1555 14 6 2.7615 5.2479 2.1153 15 8 2.5289 4.0547 2.0888 16 7 2.2562 6.0110 3.1046 17 6 1.5196 5.3879 4.2070 18 6 1.0569 6.4686 5.1864 19 6 0.2997 5.8276 6.3207 20 1 0.1626 4.7565 6.3413 21 6 -0.2180 6.6084 7.3323 22 7 -0.0506 7.9127 7.3074 23 14 -1.1560 5.8138 8.7387 24 1 -0.2701 4.8535 9.4445 25 1 -1.6062 6.8628 9.6885 26 1 -2.3379 5.0935 8.2009 27 6 1.9210 3.6048 0.0069 28 6 1.2915 2.3751 0.0002 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0209 0.3800 0.0014 33 1 5.1345 2.5752 0.0011 34 1 4.0667 5.2655 -2.1381 35 1 2.5521 5.8281 -1.3901 36 1 5.1854 7.1255 -1.1145 37 1 2.4876 7.9155 -0.2250 38 1 3.9534 8.9178 -0.0995 39 1 3.3755 7.7093 2.0432 40 1 4.9901 7.2950 1.4143 41 1 2.3802 6.9729 3.0866 42 1 0.6514 4.8605 3.8117 43 1 2.1690 4.6819 4.7247 44 1 1.9248 6.9963 5.5816 45 1 0.4074 7.1742 4.6684 46 1 -0.4151 8.4621 8.0189 47 1 1.3341 4.5114 0.0121 48 1 0.2129 2.3201 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891768841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:18 Heat of formation + Delta-G solvation = -10.830570 kcal Electronic energy + Delta-G solvation = -29498.464784 eV Core-core repulsion = 25554.685974 eV Total energy + Delta-G solvation = -3943.778810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96414 -39.61237 -37.91797 -37.21673 -34.89021 -33.62353 -32.97178 -32.12897 -30.84501 -29.49059 -29.05368 -27.24722 -26.02170 -24.65486 -23.80542 -22.74411 -21.82635 -21.43729 -20.75039 -19.55653 -18.13360 -17.88582 -16.51599 -16.35276 -15.85730 -15.74370 -15.64500 -15.43902 -15.00988 -14.76068 -14.52818 -14.33043 -14.22797 -14.04763 -13.62242 -13.51451 -13.23712 -12.95069 -12.87552 -12.46298 -12.28982 -12.15836 -11.93084 -11.58302 -11.48104 -11.29587 -11.20021 -11.06419 -10.99804 -10.66312 -10.63376 -10.33475 -9.79438 -9.59355 -9.37332 -9.29411 -8.81565 -8.47804 -8.28005 -8.13798 -7.46658 -6.11235 -4.13963 1.59771 1.68093 2.80086 3.29676 3.33494 3.37024 3.38167 3.51876 3.89998 4.01207 4.22042 4.42254 4.58370 4.74779 4.80975 4.88947 4.94866 4.99705 5.08504 5.10942 5.13565 5.19094 5.25897 5.38696 5.43839 5.47284 5.50908 5.66275 5.69508 5.75567 5.90394 6.19625 6.22832 6.37017 6.39516 6.47513 6.57553 6.61561 6.74494 6.80468 6.95504 6.98722 7.00468 7.12342 7.52572 7.56190 7.60166 7.87571 8.22305 8.34866 8.90259 8.97308 9.50880 11.00408 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.003588 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.275106 B = 7801.854841 C =10307.946567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.127 3.873 4 C -0.162 4.162 5 C -0.074 4.074 6 C -0.093 4.093 7 C 0.173 3.827 8 H 0.074 0.926 9 C 0.051 3.949 10 N -0.682 5.682 11 C 0.042 3.958 12 C 0.073 3.927 13 N -0.635 5.635 14 C 0.695 3.305 15 O -0.562 6.562 16 N -0.740 5.740 17 C 0.142 3.858 18 C 0.014 3.986 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.002 3.998 28 C -0.211 4.211 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.342 0.658 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.389 0.611 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.262 0.738 47 H 0.106 0.894 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -4.559 -19.949 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.082 3.918 4 C -0.180 4.180 5 C -0.093 4.093 6 C -0.095 4.095 7 C 0.068 3.932 8 H 0.092 0.908 9 C -0.079 4.079 10 N -0.310 5.310 11 C -0.089 4.089 12 C -0.052 4.052 13 N -0.375 5.375 14 C 0.397 3.603 15 O -0.440 6.440 16 N -0.395 5.395 17 C 0.019 3.981 18 C -0.023 4.023 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.017 4.017 28 C -0.230 4.230 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.159 0.841 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.225 0.775 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.124 0.876 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.728 -5.194 -20.292 22.326 hybrid contribution -0.335 -0.003 1.967 1.995 sum 7.393 -5.197 -18.325 20.432 Atomic orbital electron populations 1.22991 0.78772 1.03412 1.01400 1.86013 1.21118 1.27507 1.89089 1.18903 0.92267 0.83745 0.96899 1.20091 0.91206 0.97983 1.08761 1.20469 0.98690 0.91032 0.99101 1.19093 0.93688 0.92960 1.03718 1.20598 0.97456 0.89071 0.86122 0.90811 1.22526 1.01694 0.87989 0.95736 1.60649 1.10549 1.14641 1.45141 1.22441 1.01180 0.97462 0.87791 1.22394 1.00720 0.82028 1.00082 1.47408 1.55745 1.10617 1.23728 1.16073 0.78953 0.85489 0.79765 1.91048 1.64315 1.13037 1.75616 1.45818 1.58912 1.09952 1.24862 1.21554 0.93943 0.97245 0.85347 1.19304 0.96601 0.93390 0.93014 1.21000 1.34767 0.93776 1.06429 0.92347 1.24982 0.96175 0.94819 0.98218 1.69947 1.45689 1.04055 1.33667 0.86576 0.80286 0.78927 0.81779 1.20096 1.21213 1.20119 1.20313 0.93507 0.96304 0.91576 1.20940 0.99365 0.92327 1.10333 0.92959 0.88663 0.92564 0.86054 0.86375 0.89249 0.90180 0.84066 0.90196 0.89262 0.89451 0.91419 0.77526 0.92896 0.92984 0.96115 0.96097 0.92796 0.87561 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.53 10.50 -19.43 -0.20 -4.74 16 3 C 0.13 1.90 6.69 -39.22 -0.26 1.63 16 4 C -0.16 -2.28 9.99 -39.43 -0.39 -2.67 16 5 C -0.07 -0.98 9.67 -39.60 -0.38 -1.36 16 6 C -0.09 -1.26 3.05 -104.61 -0.32 -1.58 16 7 C 0.17 1.93 3.21 -68.64 -0.22 1.71 16 8 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 9 C 0.05 0.47 5.93 -3.70 -0.02 0.44 16 10 N -0.68 -5.52 6.85 -113.51 -0.78 -6.30 16 11 C 0.04 0.34 6.70 -3.70 -0.02 0.32 16 12 C 0.07 0.70 6.58 -3.60 -0.02 0.68 16 13 N -0.64 -8.10 3.00 -171.93 -0.52 -8.61 16 14 C 0.70 11.82 7.47 -86.92 -0.65 11.17 16 15 O -0.56 -11.16 11.43 5.29 0.06 -11.10 16 16 N -0.74 -13.03 5.45 -65.22 -0.36 -13.38 16 17 C 0.14 3.05 5.62 -4.04 -0.02 3.02 16 18 C 0.01 0.36 5.09 -27.88 -0.14 0.22 16 19 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 23 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 C 0.00 0.03 5.81 -39.60 -0.23 -0.20 16 28 C -0.21 -3.12 9.02 -39.43 -0.36 -3.48 16 29 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.27 7.95 -52.48 -0.42 0.85 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.84 7.42 -51.93 -0.39 0.45 16 36 H 0.34 2.27 8.83 -39.29 -0.35 1.92 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.87 5.63 -51.93 -0.29 0.58 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.39 6.06 6.00 -40.82 -0.24 5.81 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.11 1.59 7.42 -52.49 -0.39 1.20 16 48 H 0.12 1.59 6.30 -52.49 -0.33 1.25 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -32.81 380.71 -10.19 -43.00 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.38 Total: 6.35 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.47 Total: -2.01 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.91 Total: -53.61 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.14 Total: -15.84 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.81 -10.19 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891768841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.165 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds