Wall clock time and date at job start Tue Mar 31 2020 17:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35903 * 116.99768 * 2 1 4 4 C 1.38729 * 120.05328 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.93927 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.06059 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.94408 * 179.97438 * 6 5 4 8 8 H 1.08991 * 109.63058 * 356.66963 * 7 6 5 9 9 C 1.53243 * 109.78751 * 117.16228 * 7 6 5 10 10 N 1.46903 * 109.33506 * 173.63146 * 9 7 6 11 11 C 1.46894 * 111.27254 * 296.88929 * 10 9 7 12 12 C 1.53238 * 109.33967 * 63.10918 * 11 10 9 13 13 N 1.47080 * 109.62802 * 236.28385 * 7 6 5 14 14 C 1.34781 * 120.88163 * 8.88870 * 13 7 6 15 15 O 1.21591 * 119.99677 * 5.52948 * 14 13 7 16 16 N 1.34769 * 120.00455 * 185.52357 * 14 13 7 17 17 C 1.46497 * 120.00276 * 185.02194 * 16 14 13 18 18 C 1.53004 * 109.47135 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47229 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99476 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00355 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99659 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00287 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47542 * 59.99741 * 23 21 19 25 25 H 1.48503 * 109.47232 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47222 * 299.99786 * 23 21 19 27 27 C 1.38263 * 120.10799 * 0.25413 * 6 5 4 28 28 C 1.38149 * 120.05506 * 359.44884 * 27 6 5 29 29 H 1.09000 * 109.46853 * 60.00624 * 1 2 3 30 30 H 1.09004 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47186 * 299.99704 * 1 2 3 32 32 H 1.07997 * 120.03203 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.97146 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.48814 * 293.58685 * 9 7 6 35 35 H 1.08997 * 109.49463 * 53.67273 * 9 7 6 36 36 H 1.00901 * 111.00538 * 61.04615 * 10 9 7 37 37 H 1.09000 * 109.49244 * 303.15028 * 11 10 9 38 38 H 1.08999 * 109.51735 * 183.08356 * 11 10 9 39 39 H 1.09001 * 109.63443 * 186.46090 * 12 11 10 40 40 H 1.09001 * 109.79112 * 65.97096 * 12 11 10 41 41 H 0.97006 * 119.99903 * 5.03095 * 16 14 13 42 42 H 1.09002 * 109.47476 * 300.00288 * 17 16 14 43 43 H 1.09004 * 109.47260 * 60.00612 * 17 16 14 44 44 H 1.08994 * 109.47128 * 300.00548 * 18 17 16 45 45 H 1.08998 * 109.46891 * 60.00475 * 18 17 16 46 46 H 0.96999 * 119.99510 * 179.97438 * 22 21 19 47 47 H 1.08000 * 119.97283 * 179.70985 * 27 6 5 48 48 H 1.08002 * 120.02897 * 180.29818 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6759 0.0016 7 6 3.9859 5.0186 0.0028 8 1 5.0653 4.8795 0.0627 9 6 3.6354 5.7806 -1.2798 10 7 4.1803 7.1425 -1.2007 11 6 3.5701 7.8975 -0.0982 12 6 3.9178 7.2223 1.2328 13 7 3.5247 5.8071 1.1555 14 6 2.7615 5.2479 2.1153 15 8 2.5289 4.0547 2.0888 16 7 2.2562 6.0110 3.1046 17 6 1.5196 5.3879 4.2070 18 6 1.0569 6.4686 5.1864 19 6 0.2997 5.8276 6.3207 20 1 0.1626 4.7565 6.3413 21 6 -0.2180 6.6084 7.3323 22 7 -0.0506 7.9127 7.3074 23 14 -1.1560 5.8138 8.7387 24 1 -0.2701 4.8535 9.4445 25 1 -1.6062 6.8628 9.6885 26 1 -2.3379 5.0935 8.2009 27 6 1.9210 3.6048 0.0069 28 6 1.2915 2.3751 0.0002 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0209 0.3800 0.0014 33 1 5.1345 2.5752 0.0011 34 1 4.0667 5.2655 -2.1381 35 1 2.5521 5.8281 -1.3901 36 1 5.1854 7.1255 -1.1145 37 1 2.4876 7.9155 -0.2250 38 1 3.9534 8.9178 -0.0995 39 1 3.3755 7.7093 2.0432 40 1 4.9901 7.2950 1.4143 41 1 2.3802 6.9729 3.0866 42 1 0.6514 4.8605 3.8117 43 1 2.1690 4.6819 4.7247 44 1 1.9248 6.9963 5.5816 45 1 0.4074 7.1742 4.6684 46 1 -0.4151 8.4621 8.0189 47 1 1.3341 4.5114 0.0121 48 1 0.2129 2.3201 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891768841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:17 Heat of formation + Delta-G solvation = -33.771304 kcal Electronic energy + Delta-G solvation = -29499.459569 eV Core-core repulsion = 25554.685974 eV Total energy + Delta-G solvation = -3944.773595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.06142 -40.67307 -39.04974 -38.19374 -36.53882 -34.98448 -34.42970 -33.26965 -31.90933 -31.22968 -30.02279 -28.17236 -27.21780 -26.27981 -24.74939 -23.71494 -23.24718 -22.57910 -22.12275 -20.74633 -19.26062 -18.97601 -18.48944 -17.46753 -17.08870 -16.66995 -16.60615 -16.54606 -16.47996 -16.03316 -15.59541 -15.55788 -15.42224 -15.25942 -14.77173 -14.61529 -14.32788 -14.28336 -14.25543 -13.92009 -13.44201 -13.20697 -12.98561 -12.93545 -12.79694 -12.56117 -12.39004 -12.31399 -12.26562 -12.10870 -11.97990 -11.66251 -11.60976 -11.46711 -10.92117 -10.61997 -10.39774 -9.96361 -9.59077 -9.09262 -8.56308 -8.25917 -6.36440 0.53237 0.59032 1.39817 1.41983 1.49860 1.66398 2.20927 2.38548 2.43830 2.84464 3.07592 3.08748 3.25199 3.74073 3.82027 3.91332 4.01467 4.09264 4.17809 4.19445 4.30440 4.31764 4.34112 4.47467 4.48589 4.49557 4.57613 4.64697 4.70959 4.78306 4.82926 4.83930 4.98008 5.05847 5.17253 5.28147 5.35626 5.48041 5.49425 5.51658 5.56235 5.72512 5.78041 5.89090 5.91608 5.95764 6.15114 6.46832 6.52666 6.76025 7.01044 7.32953 7.62971 8.85718 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.003588 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.275106 B = 7801.854841 C =10307.946567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.338 6.338 3 C 0.110 3.890 4 C -0.174 4.174 5 C -0.077 4.077 6 C -0.098 4.098 7 C 0.172 3.828 8 H 0.094 0.906 9 C 0.062 3.938 10 N -0.678 5.678 11 C 0.049 3.951 12 C 0.069 3.931 13 N -0.628 5.628 14 C 0.691 3.309 15 O -0.594 6.594 16 N -0.738 5.738 17 C 0.167 3.833 18 C 0.027 3.973 19 C -0.547 4.547 20 H 0.056 0.944 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.963 3.037 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.269 1.269 27 C -0.010 4.010 28 C -0.226 4.226 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.046 0.954 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.355 0.645 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.400 0.600 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.007 0.993 45 H 0.006 0.994 46 H 0.266 0.734 47 H 0.096 0.904 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.500 -4.380 -20.645 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.252 6.252 3 C 0.065 3.935 4 C -0.193 4.193 5 C -0.096 4.096 6 C -0.099 4.099 7 C 0.067 3.933 8 H 0.112 0.888 9 C -0.069 4.069 10 N -0.307 5.307 11 C -0.082 4.082 12 C -0.055 4.055 13 N -0.366 5.366 14 C 0.393 3.607 15 O -0.474 6.474 16 N -0.395 5.395 17 C 0.042 3.958 18 C -0.011 4.011 19 C -0.586 4.586 20 H 0.074 0.926 21 C -0.189 4.189 22 N -0.565 5.565 23 Si 0.787 3.213 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.194 1.194 27 C -0.029 4.029 28 C -0.245 4.245 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.065 0.935 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.174 0.826 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.237 0.763 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.075 0.925 47 H 0.114 0.886 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.954 -4.981 -21.036 23.399 hybrid contribution -0.685 -0.045 2.117 2.226 sum 8.269 -5.027 -18.919 21.250 Atomic orbital electron populations 1.23220 0.77158 1.05223 1.01495 1.85986 1.22881 1.27227 1.89106 1.19133 0.92920 0.84033 0.97450 1.20427 0.91205 0.99056 1.08576 1.20825 1.00094 0.90532 0.98135 1.19350 0.93287 0.94377 1.02887 1.20859 0.98127 0.88056 0.86261 0.88777 1.22428 1.00939 0.88453 0.95106 1.60636 1.11504 1.13709 1.44849 1.22417 1.00499 0.98492 0.86761 1.22652 1.01821 0.80064 1.00955 1.47443 1.54269 1.12049 1.22847 1.16200 0.79276 0.85047 0.80165 1.91038 1.65463 1.14418 1.76473 1.45523 1.59057 1.10509 1.24440 1.20953 0.93415 0.95721 0.85663 1.19091 0.95414 0.93593 0.92973 1.21404 1.35498 0.93980 1.07700 0.92570 1.25831 0.96947 0.95338 1.00769 1.70048 1.46476 1.05302 1.34639 0.85533 0.79013 0.78192 0.78531 1.19408 1.20391 1.19421 1.20341 0.94363 0.95818 0.92416 1.21096 0.99836 0.92670 1.10875 0.91794 0.86011 0.93534 0.84787 0.83691 0.87459 0.91838 0.82560 0.91706 0.86840 0.89971 0.89315 0.76317 0.94348 0.94338 0.97468 0.97555 0.92493 0.88634 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.60 16 2 O -0.34 -9.52 10.50 -92.46 -0.97 -10.50 16 3 C 0.11 3.32 6.69 22.51 0.15 3.47 16 4 C -0.17 -4.83 9.99 22.37 0.22 -4.61 16 5 C -0.08 -1.95 9.67 22.26 0.22 -1.73 16 6 C -0.10 -2.57 3.05 -19.85 -0.06 -2.63 16 7 C 0.17 3.51 3.21 44.21 0.14 3.65 16 8 H 0.09 1.60 7.88 -2.39 -0.02 1.58 16 9 C 0.06 0.99 5.93 86.38 0.51 1.50 16 10 N -0.68 -9.01 6.85 -513.03 -3.52 -12.52 16 11 C 0.05 0.68 6.70 86.38 0.58 1.26 16 12 C 0.07 1.19 6.58 86.35 0.57 1.76 16 13 N -0.63 -15.19 3.00 -816.13 -2.45 -17.64 16 14 C 0.69 23.45 7.47 179.06 1.34 24.79 16 15 O -0.59 -23.89 11.43 -4.00 -0.05 -23.93 16 16 N -0.74 -26.30 5.45 -478.53 -2.61 -28.91 16 17 C 0.17 7.37 5.62 86.38 0.49 7.86 16 18 C 0.03 1.37 5.09 29.85 0.15 1.52 16 19 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 20 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 21 C 0.01 0.57 5.46 84.65 0.46 1.03 16 22 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 23 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C -0.01 -0.31 5.81 22.25 0.13 -0.19 16 28 C -0.23 -6.91 9.02 22.37 0.20 -6.71 16 29 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 30 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.03 7.66 -2.39 -0.02 1.01 16 32 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.15 2.75 7.95 -2.91 -0.02 2.73 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.27 7.42 -2.39 -0.02 1.25 16 36 H 0.35 3.36 8.83 -89.69 -0.79 2.57 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.52 5.63 -2.39 -0.01 1.50 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.40 12.47 6.00 -92.70 -0.56 11.91 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 47 H 0.10 2.99 7.42 -2.91 -0.02 2.97 16 48 H 0.12 3.45 6.30 -2.91 -0.02 3.43 16 Total: -1.00 -71.37 380.71 -1.20 -72.57 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.37 Total: 27.10 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.44 Total: 1.92 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -8.29 Total: -112.96 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.02 Total: -34.43 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -71.37 -1.20 -72.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891768841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.796 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds