Wall clock time and date at job start Tue Mar 31 2020 17:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00177 * 2 1 4 4 C 1.38748 * 120.05684 * 359.97438 * 3 2 1 5 5 C 1.38115 * 119.94971 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05380 * 0.02562 * 5 4 3 7 7 C 1.38252 * 120.10729 * 359.95806 * 6 5 4 8 8 C 1.50699 * 119.96714 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.78605 * 176.86209 * 8 7 6 10 10 C 1.53240 * 109.63298 * 56.37929 * 8 7 6 11 11 N 1.46901 * 109.34231 * 186.46144 * 10 8 7 12 12 C 1.46902 * 111.27063 * 63.10236 * 11 10 8 13 13 C 1.53696 * 109.25506 * 296.75854 * 12 11 10 14 14 N 1.47080 * 108.27686 * 54.08311 * 13 12 11 15 15 C 1.34777 * 120.87889 * 128.75710 * 14 13 12 16 16 O 1.21593 * 119.99762 * 184.55582 * 15 14 13 17 17 N 1.34773 * 120.00469 * 4.55568 * 15 14 13 18 18 C 1.46497 * 120.00289 * 175.03999 * 17 15 14 19 19 C 1.52997 * 109.47304 * 179.97438 * 18 17 15 20 20 C 1.50694 * 109.47594 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99590 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00672 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99344 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00362 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47069 * 90.00426 * 24 22 20 26 26 H 1.48503 * 109.47063 * 210.00571 * 24 22 20 27 27 H 1.48499 * 109.47229 * 330.00229 * 24 22 20 28 28 C 1.38158 * 120.06033 * 0.29011 * 7 6 5 29 29 H 1.08998 * 109.46797 * 299.99813 * 1 2 3 30 30 H 1.08998 * 109.46714 * 59.99959 * 1 2 3 31 31 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.02425 * 359.95546 * 4 3 2 33 33 H 1.07998 * 119.97764 * 179.97438 * 5 4 3 34 34 H 1.07997 * 119.94839 * 179.97438 * 6 5 4 35 35 H 1.09008 * 109.49106 * 306.42004 * 10 8 7 36 36 H 1.09001 * 109.49391 * 66.49575 * 10 8 7 37 37 H 1.00897 * 110.99474 * 298.95471 * 11 10 8 38 38 H 1.09004 * 109.49330 * 56.85409 * 12 11 10 39 39 H 1.08990 * 109.49228 * 176.91164 * 12 11 10 40 40 H 1.09000 * 109.79629 * 294.41879 * 13 12 11 41 41 H 1.09004 * 109.70060 * 173.69001 * 13 12 11 42 42 H 0.97007 * 119.99676 * 355.03266 * 17 15 14 43 43 H 1.08994 * 109.47626 * 59.99418 * 18 17 15 44 44 H 1.08999 * 109.46704 * 299.99189 * 18 17 15 45 45 H 1.09001 * 109.47309 * 299.99658 * 19 18 17 46 46 H 1.09003 * 109.47181 * 59.99352 * 19 18 17 47 47 H 0.97003 * 119.99817 * 179.97438 * 23 22 20 48 48 H 1.07991 * 120.03233 * 179.73007 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6758 0.0005 7 6 4.0560 2.5170 0.0014 8 6 5.5608 2.5981 0.0026 9 1 5.9843 1.5953 0.0593 10 6 6.0310 3.4241 1.2046 11 7 7.4828 3.6299 1.1156 12 6 7.8385 4.4083 -0.0783 13 6 7.4436 3.6171 -1.3354 14 7 6.0209 3.2599 -1.2277 15 6 5.1627 3.5268 -2.2321 16 8 3.9760 3.3007 -2.0940 17 7 5.6198 4.0444 -3.3894 18 6 4.7061 4.2333 -4.5189 19 6 5.4722 4.8320 -5.7001 20 6 4.5325 5.0257 -6.8622 21 1 3.4926 4.7497 -6.7674 22 6 4.9999 5.5561 -8.0459 23 7 6.2661 5.8925 -8.1610 24 14 3.8348 5.7968 -9.4860 25 1 3.2256 7.1489 -9.4092 26 1 4.5877 5.6647 -10.7592 27 1 2.7651 4.7681 -9.4346 28 6 3.4312 1.2847 -0.0043 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2129 2.3203 -0.0017 33 1 1.3340 4.5113 -0.0008 34 1 3.7923 4.6380 0.0005 35 1 5.5258 4.3900 1.2021 36 1 5.7948 2.8921 2.1262 37 1 7.9745 2.7490 1.1327 38 1 7.3081 5.3605 -0.0630 39 1 8.9130 4.5905 -0.0869 40 1 8.0446 2.7104 -1.4049 41 1 7.6006 4.2325 -2.2214 42 1 6.5539 4.2921 -3.4746 43 1 3.9026 4.9095 -4.2271 44 1 4.2839 3.2713 -4.8093 45 1 5.8942 5.7940 -5.4095 46 1 6.2760 4.1560 -5.9920 47 1 6.5951 6.2653 -8.9939 48 1 4.0206 0.3799 -0.0080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891769029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:20 Heat of formation + Delta-G solvation = -33.571194 kcal Electronic energy + Delta-G solvation = -29434.793089 eV Core-core repulsion = 25490.028172 eV Total energy + Delta-G solvation = -3944.764917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.04221 -40.66624 -39.04641 -38.17304 -36.52770 -34.99003 -34.46798 -33.49312 -31.54537 -31.20882 -30.00703 -28.14927 -27.36704 -26.30592 -24.81208 -23.70432 -23.15308 -22.69891 -22.08602 -20.76818 -19.40985 -18.53779 -18.25565 -17.38634 -17.11036 -16.99407 -16.59013 -16.57289 -16.50667 -16.24259 -15.76857 -15.56119 -15.39543 -15.18713 -14.78210 -14.53054 -14.36818 -14.28501 -14.22007 -13.74657 -13.41678 -13.17845 -13.01389 -12.95365 -12.63404 -12.54083 -12.50202 -12.33766 -12.27425 -12.06969 -11.99020 -11.68184 -11.61343 -11.44776 -10.99393 -10.61752 -10.32705 -9.97934 -9.56424 -9.01707 -8.63191 -8.25729 -6.36089 0.44127 0.67741 1.40135 1.40699 1.51950 1.65456 2.20741 2.38455 2.42144 2.85315 3.08938 3.10667 3.24172 3.70613 3.81444 3.91331 4.05958 4.10879 4.13824 4.20737 4.29489 4.34409 4.37928 4.44168 4.48262 4.50155 4.55070 4.63044 4.71323 4.75654 4.84004 4.86049 4.97074 5.05296 5.15582 5.29461 5.41324 5.44731 5.52058 5.57002 5.58429 5.72821 5.76891 5.85789 5.89442 5.96477 6.15659 6.45059 6.55958 6.76664 7.00639 7.33258 7.63322 8.86134 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.003407 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.494267 B = 8216.450575 C =10525.557698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.340 6.340 3 C 0.104 3.896 4 C -0.214 4.214 5 C -0.103 4.103 6 C -0.086 4.086 7 C -0.016 4.016 8 C 0.166 3.834 9 H 0.092 0.908 10 C 0.062 3.938 11 N -0.677 5.677 12 C 0.050 3.950 13 C 0.068 3.932 14 N -0.627 5.627 15 C 0.691 3.309 16 O -0.592 6.592 17 N -0.737 5.737 18 C 0.167 3.833 19 C 0.027 3.973 20 C -0.546 4.546 21 H 0.056 0.944 22 C 0.009 3.991 23 N -0.925 5.925 24 Si 0.964 3.036 25 H -0.272 1.272 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.161 4.161 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.354 0.646 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.399 0.601 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.007 0.993 46 H 0.006 0.994 47 H 0.266 0.734 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 -7.909 22.469 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.254 6.254 3 C 0.059 3.941 4 C -0.233 4.233 5 C -0.121 4.121 6 C -0.105 4.105 7 C -0.017 4.017 8 C 0.061 3.939 9 H 0.109 0.891 10 C -0.069 4.069 11 N -0.306 5.306 12 C -0.081 4.081 13 C -0.056 4.056 14 N -0.365 5.365 15 C 0.393 3.607 16 O -0.472 6.472 17 N -0.395 5.395 18 C 0.043 3.957 19 C -0.011 4.011 20 C -0.585 4.585 21 H 0.075 0.925 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.789 3.211 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.192 1.192 28 C -0.181 4.181 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.174 0.826 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.237 0.763 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.075 0.925 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.095 -7.644 22.859 24.128 hybrid contribution -0.520 -0.073 -2.154 2.217 sum -1.615 -7.717 20.705 22.155 Atomic orbital electron populations 1.23249 0.76948 1.05246 1.01773 1.85987 1.23094 1.27098 1.89244 1.18976 0.92472 0.84414 0.98221 1.21223 1.00276 0.92213 1.09566 1.20900 0.94700 0.97327 0.99171 1.20492 0.93842 0.97014 0.99118 1.19169 0.94202 0.92483 0.95829 1.20925 0.90584 0.97238 0.85122 0.89070 1.22439 0.88788 0.99805 0.95895 1.60649 1.05937 1.24586 1.39409 1.22504 1.03023 0.96390 0.86147 1.22771 0.80157 1.01233 1.01417 1.47397 1.09014 1.64294 1.15831 1.16264 0.85117 0.78688 0.80617 1.91067 1.15442 1.60261 1.80431 1.45522 1.13686 1.68025 1.12222 1.20954 0.91711 0.98457 0.84614 1.19090 0.95289 0.95056 0.91626 1.21438 0.96196 1.42534 0.98324 0.92543 1.25851 0.96859 0.94775 1.01542 1.70055 1.15397 1.43498 1.27543 0.85460 0.78732 0.78845 0.78112 1.19693 1.20368 1.19208 1.20158 0.91778 0.97695 1.08457 0.91560 0.93014 0.86260 0.84590 0.85543 0.88007 0.91228 0.87582 0.82618 0.91518 0.86781 0.89355 0.89760 0.76334 0.94147 0.94457 0.97479 0.97566 0.92505 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.34 -9.14 10.50 -92.45 -0.97 -10.11 16 3 C 0.10 3.06 6.69 22.51 0.15 3.21 16 4 C -0.21 -5.97 9.04 22.36 0.20 -5.77 16 5 C -0.10 -2.97 10.00 22.25 0.22 -2.75 16 6 C -0.09 -2.53 5.95 22.29 0.13 -2.40 16 7 C -0.02 -0.43 2.98 -19.88 -0.06 -0.49 16 8 C 0.17 3.59 3.22 44.21 0.14 3.73 16 9 H 0.09 1.72 7.90 -2.38 -0.02 1.71 16 10 C 0.06 1.03 5.87 86.38 0.51 1.53 16 11 N -0.68 -9.24 6.85 -512.18 -3.51 -12.75 16 12 C 0.05 0.70 6.72 86.54 0.58 1.28 16 13 C 0.07 1.19 6.55 86.50 0.57 1.76 16 14 N -0.63 -15.54 3.00 -815.22 -2.44 -17.98 16 15 C 0.69 23.77 8.00 179.06 1.43 25.20 16 16 O -0.59 -23.93 11.18 -4.01 -0.04 -23.98 16 17 N -0.74 -26.51 5.47 -478.55 -2.62 -29.13 16 18 C 0.17 7.41 5.62 86.38 0.49 7.90 16 19 C 0.03 1.38 5.09 29.85 0.15 1.53 16 20 C -0.55 -30.94 9.11 25.60 0.23 -30.70 16 21 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 22 C 0.01 0.49 5.46 84.65 0.46 0.95 16 23 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 24 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 C -0.16 -4.69 9.58 22.37 0.21 -4.47 16 29 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 30 H 0.05 0.94 7.66 -2.39 -0.02 0.92 16 31 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.14 3.11 6.30 -2.91 -0.02 3.09 16 33 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 34 H 0.10 3.02 7.33 -2.91 -0.02 3.00 16 35 H 0.07 1.38 6.99 -2.38 -0.02 1.37 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.35 3.57 8.83 -89.70 -0.79 2.78 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.56 5.73 -2.38 -0.01 1.55 16 42 H 0.40 12.55 6.00 -92.70 -0.56 11.99 16 43 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 48 H 0.13 3.31 7.96 -2.92 -0.02 3.28 16 Total: -1.00 -71.50 380.57 -1.10 -72.61 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.37 Total: 27.42 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 6.54 Total: 2.04 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -8.28 Total: -113.91 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.02 Total: -34.09 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -71.50 -1.10 -72.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.035 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds