Wall clock time and date at job start Tue Mar 31 2020 17:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35904 * 117.00278 * 2 1 4 4 C 1.38756 * 120.04951 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.93607 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05733 * 359.75341 * 5 4 3 7 7 C 1.38247 * 120.11257 * 0.50532 * 6 5 4 8 8 C 1.50703 * 119.97251 * 179.76993 * 7 6 5 9 9 H 1.08997 * 109.62279 * 186.03049 * 8 7 6 10 10 C 1.53243 * 109.78630 * 306.51876 * 8 7 6 11 11 N 1.46894 * 109.33791 * 173.63564 * 10 8 7 12 12 C 1.46960 * 111.44613 * 296.98186 * 11 10 8 13 13 C 1.53242 * 109.30654 * 62.80656 * 12 11 10 14 14 N 1.47073 * 108.68759 * 306.47195 * 13 12 11 15 15 C 1.34777 * 120.88184 * 231.06696 * 14 13 12 16 16 O 1.21592 * 120.00046 * 175.08321 * 15 14 13 17 17 N 1.34781 * 119.99981 * 355.08460 * 15 14 13 18 18 C 1.46499 * 119.99710 * 184.95769 * 17 15 14 19 19 C 1.53003 * 109.46870 * 179.97438 * 18 17 15 20 20 C 1.50694 * 109.47107 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99950 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00212 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99561 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00157 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47381 * 59.99418 * 24 22 20 26 26 H 1.48499 * 109.47396 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47170 * 299.99458 * 24 22 20 28 28 C 1.38166 * 120.05195 * 359.48888 * 7 6 5 29 29 H 1.09000 * 109.46901 * 300.00615 * 1 2 3 30 30 H 1.08994 * 109.46403 * 60.00405 * 1 2 3 31 31 H 1.08998 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.03681 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.96490 * 180.02562 * 5 4 3 34 34 H 1.07995 * 119.94327 * 180.27386 * 6 5 4 35 35 H 1.09001 * 109.49126 * 293.59357 * 10 8 7 36 36 H 1.09003 * 109.49116 * 53.64796 * 10 8 7 37 37 H 1.00893 * 111.00059 * 172.74722 * 11 10 8 38 38 H 1.09000 * 109.33851 * 302.96295 * 12 11 10 39 39 H 1.08996 * 109.67540 * 182.86190 * 12 11 10 40 40 H 1.09001 * 109.62540 * 186.66156 * 13 12 11 41 41 H 1.09002 * 109.62874 * 66.28596 * 13 12 11 42 42 H 0.96998 * 120.00032 * 4.95919 * 17 15 14 43 43 H 1.08999 * 109.47223 * 299.99971 * 18 17 15 44 44 H 1.08999 * 109.47086 * 60.00216 * 18 17 15 45 45 H 1.08999 * 109.47191 * 300.00011 * 19 18 17 46 46 H 1.08999 * 109.47073 * 60.00228 * 19 18 17 47 47 H 0.96998 * 119.99504 * 180.02562 * 23 22 20 48 48 H 1.08000 * 120.02730 * 180.27400 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6048 0.0011 6 6 3.3021 3.6757 0.0062 7 6 4.0561 2.5170 0.0003 8 6 5.5610 2.5980 0.0007 9 1 5.9814 1.5988 -0.1123 10 6 6.0328 3.4887 -1.1536 11 7 7.4852 3.6849 -1.0543 12 6 7.8485 4.3926 0.1814 13 6 7.4461 3.5408 1.3901 14 7 6.0236 3.1886 1.2657 15 6 5.1668 3.4010 2.2842 16 8 3.9792 3.1878 2.1341 17 7 5.6264 3.8499 3.4691 18 6 4.7138 3.9774 4.6079 19 6 5.4831 4.5034 5.8214 20 6 4.5442 4.6352 6.9928 21 1 3.5029 4.3707 6.8826 22 6 5.0143 5.0944 8.2049 23 7 6.2822 5.4170 8.3388 24 14 3.8507 5.2571 9.6570 25 1 3.2701 3.9283 9.9775 26 1 4.5972 5.7677 10.8348 27 1 2.7596 6.2041 9.3134 28 6 3.4312 1.2848 -0.0001 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2129 2.3204 0.0014 33 1 1.3341 4.5113 0.0019 34 1 3.7924 4.6379 0.0111 35 1 5.7946 3.0098 -2.1034 36 1 5.5302 4.4542 -1.0969 37 1 7.8410 4.1685 -1.8652 38 1 7.3237 5.3472 0.2183 39 1 8.9242 4.5674 0.2015 40 1 7.6040 4.1086 2.3070 41 1 8.0476 2.6321 1.4141 42 1 6.5614 4.0885 3.5677 43 1 3.9130 4.6725 4.3558 44 1 4.2878 3.0021 4.8431 45 1 6.2837 3.8080 6.0735 46 1 5.9094 5.4786 5.5866 47 1 6.6130 5.7397 9.1916 48 1 4.0207 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891769030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:24 Heat of formation + Delta-G solvation = -10.454046 kcal Electronic energy + Delta-G solvation = -29412.393889 eV Core-core repulsion = 25468.631407 eV Total energy + Delta-G solvation = -3943.762482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81467 -39.57727 -37.78747 -37.12622 -34.83533 -33.72718 -33.04159 -32.21576 -30.49861 -29.47921 -28.96351 -27.28170 -26.41432 -24.63924 -23.90353 -22.53446 -21.49779 -21.46313 -20.66241 -19.28178 -18.29002 -17.11523 -16.47005 -16.21826 -16.03227 -15.96847 -15.65956 -15.55993 -15.28292 -14.87706 -14.58462 -14.49257 -14.14718 -13.82225 -13.67649 -13.34979 -13.26348 -12.76198 -12.68702 -12.39738 -12.26367 -12.19884 -11.76177 -11.59425 -11.52435 -11.16914 -11.14550 -11.07304 -10.99394 -10.64903 -10.62626 -10.28967 -9.81007 -9.54579 -9.28624 -9.00409 -8.66846 -8.44341 -8.27814 -8.14323 -7.55478 -6.08300 -4.10771 1.53165 1.78916 2.89723 3.31840 3.34100 3.35471 3.39192 3.59101 3.86965 4.02090 4.31028 4.46045 4.70098 4.74293 4.79386 4.93605 5.01547 5.07261 5.10545 5.11483 5.18789 5.23608 5.28773 5.39503 5.41229 5.50124 5.53766 5.61501 5.72074 5.77675 5.94877 6.21669 6.27508 6.42753 6.49667 6.52651 6.61497 6.68058 6.79704 6.83542 6.95579 6.98657 7.05310 7.22882 7.57098 7.58698 7.64721 7.90935 8.26874 8.41115 8.94014 9.04412 9.53809 11.03392 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.003428 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.632606 B = 8166.934099 C =10493.813376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.323 6.323 3 C 0.120 3.880 4 C -0.207 4.207 5 C -0.086 4.086 6 C -0.086 4.086 7 C -0.010 4.010 8 C 0.209 3.791 9 H 0.084 0.916 10 C 0.050 3.950 11 N -0.689 5.689 12 C 0.043 3.957 13 C 0.115 3.885 14 N -0.634 5.634 15 C 0.696 3.304 16 O -0.563 6.563 17 N -0.740 5.740 18 C 0.142 3.858 19 C 0.014 3.986 20 C -0.520 4.520 21 H 0.058 0.942 22 C 0.059 3.941 23 N -0.895 5.895 24 Si 0.897 3.103 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.141 4.141 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.346 0.654 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.389 0.611 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.020 0.980 47 H 0.262 0.738 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -4.884 -22.928 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.076 3.924 4 C -0.226 4.226 5 C -0.105 4.105 6 C -0.105 4.105 7 C -0.012 4.012 8 C 0.105 3.895 9 H 0.102 0.898 10 C -0.080 4.080 11 N -0.320 5.320 12 C -0.088 4.088 13 C -0.009 4.009 14 N -0.374 5.374 15 C 0.398 3.602 16 O -0.441 6.441 17 N -0.396 5.396 18 C 0.019 3.981 19 C -0.023 4.023 20 C -0.559 4.559 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.534 5.534 24 Si 0.724 3.276 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.161 4.161 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.164 0.836 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.224 0.776 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.072 0.928 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.495 -5.785 -22.565 23.342 hybrid contribution -0.560 1.399 0.967 1.791 sum -2.055 -4.385 -21.598 22.134 Atomic orbital electron populations 1.22965 0.78957 1.03364 1.01170 1.86021 1.20927 1.27460 1.89277 1.18744 0.92045 0.83755 0.97866 1.20991 0.99194 0.92526 1.09925 1.20626 0.94373 0.96526 0.98927 1.20443 0.93526 0.96911 0.99615 1.19024 0.93079 0.92959 0.96103 1.19903 0.90447 0.96840 0.82341 0.89798 1.22384 0.87875 0.99082 0.98642 1.60174 1.12705 1.54303 1.04814 1.22342 1.01106 0.95079 0.90235 1.21695 0.81807 0.99594 0.97796 1.47399 1.08291 1.67872 1.13794 1.16132 0.85015 0.78714 0.80377 1.91069 1.13819 1.58481 1.80726 1.45800 1.13595 1.69892 1.10272 1.21544 0.92059 1.00289 0.84160 1.19303 0.95946 0.96427 0.90642 1.21012 0.95636 1.44225 0.95038 0.92338 1.24986 0.95197 0.95191 0.98871 1.69946 1.13648 1.44459 1.25335 0.86577 0.80786 0.78601 0.81602 1.20106 1.21241 1.20131 1.19907 0.91327 0.97203 1.07652 0.92784 0.93034 0.88700 0.86427 0.86750 0.87612 0.89385 0.94071 0.83559 0.94474 0.89337 0.89686 0.90680 0.77559 0.92903 0.92971 0.96064 0.96137 0.92824 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.48 10.50 -19.44 -0.20 -4.69 16 3 C 0.12 1.80 6.69 -39.22 -0.26 1.54 16 4 C -0.21 -2.92 9.04 -39.43 -0.36 -3.28 16 5 C -0.09 -1.24 10.03 -39.60 -0.40 -1.63 16 6 C -0.09 -1.27 6.24 -39.56 -0.25 -1.51 16 7 C -0.01 -0.15 2.92 -104.64 -0.31 -0.45 16 8 C 0.21 2.58 3.25 -68.64 -0.22 2.36 16 9 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 10 C 0.05 0.48 5.85 -3.70 -0.02 0.46 16 11 N -0.69 -5.76 6.81 -113.46 -0.77 -6.53 16 12 C 0.04 0.37 6.71 -3.67 -0.02 0.34 16 13 C 0.11 1.23 6.53 -3.60 -0.02 1.20 16 14 N -0.63 -8.68 3.01 -171.93 -0.52 -9.19 16 15 C 0.70 12.26 8.04 -86.91 -0.70 11.56 16 16 O -0.56 -11.41 11.29 5.28 0.06 -11.35 16 17 N -0.74 -13.40 5.47 -65.22 -0.36 -13.76 16 18 C 0.14 3.11 5.62 -4.04 -0.02 3.08 16 19 C 0.01 0.36 5.09 -27.88 -0.14 0.22 16 20 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 24 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C -0.14 -2.11 9.49 -39.44 -0.37 -2.49 16 29 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.53 7.16 -52.49 -0.38 1.16 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.42 6.86 -51.93 -0.36 0.07 16 37 H 0.35 2.18 8.90 -39.30 -0.35 1.83 16 38 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.89 5.73 -51.93 -0.30 0.59 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.39 6.23 6.01 -40.82 -0.25 5.98 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.12 1.66 7.96 -52.49 -0.42 1.24 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -33.25 380.62 -10.21 -43.45 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.35 Total: 5.97 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.52 Total: -0.64 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.91 Total: -55.01 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.14 Total: -16.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.25 -10.21 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.999 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds