Wall clock time and date at job start Tue Mar 31 2020 17:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35904 * 117.00278 * 2 1 4 4 C 1.38756 * 120.04951 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.93607 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05733 * 359.75341 * 5 4 3 7 7 C 1.38247 * 120.11257 * 0.50532 * 6 5 4 8 8 C 1.50703 * 119.97251 * 179.76993 * 7 6 5 9 9 H 1.08997 * 109.62279 * 186.03049 * 8 7 6 10 10 C 1.53243 * 109.78630 * 306.51876 * 8 7 6 11 11 N 1.46894 * 109.33791 * 173.63564 * 10 8 7 12 12 C 1.46960 * 111.44613 * 296.98186 * 11 10 8 13 13 C 1.53242 * 109.30654 * 62.80656 * 12 11 10 14 14 N 1.47073 * 108.68759 * 306.47195 * 13 12 11 15 15 C 1.34777 * 120.88184 * 231.06696 * 14 13 12 16 16 O 1.21592 * 120.00046 * 175.08321 * 15 14 13 17 17 N 1.34781 * 119.99981 * 355.08460 * 15 14 13 18 18 C 1.46499 * 119.99710 * 184.95769 * 17 15 14 19 19 C 1.53003 * 109.46870 * 179.97438 * 18 17 15 20 20 C 1.50694 * 109.47107 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99950 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00212 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99561 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00157 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47381 * 59.99418 * 24 22 20 26 26 H 1.48499 * 109.47396 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47170 * 299.99458 * 24 22 20 28 28 C 1.38166 * 120.05195 * 359.48888 * 7 6 5 29 29 H 1.09000 * 109.46901 * 300.00615 * 1 2 3 30 30 H 1.08994 * 109.46403 * 60.00405 * 1 2 3 31 31 H 1.08998 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.03681 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.96490 * 180.02562 * 5 4 3 34 34 H 1.07995 * 119.94327 * 180.27386 * 6 5 4 35 35 H 1.09001 * 109.49126 * 293.59357 * 10 8 7 36 36 H 1.09003 * 109.49116 * 53.64796 * 10 8 7 37 37 H 1.00893 * 111.00059 * 172.74722 * 11 10 8 38 38 H 1.09000 * 109.33851 * 302.96295 * 12 11 10 39 39 H 1.08996 * 109.67540 * 182.86190 * 12 11 10 40 40 H 1.09001 * 109.62540 * 186.66156 * 13 12 11 41 41 H 1.09002 * 109.62874 * 66.28596 * 13 12 11 42 42 H 0.96998 * 120.00032 * 4.95919 * 17 15 14 43 43 H 1.08999 * 109.47223 * 299.99971 * 18 17 15 44 44 H 1.08999 * 109.47086 * 60.00216 * 18 17 15 45 45 H 1.08999 * 109.47191 * 300.00011 * 19 18 17 46 46 H 1.08999 * 109.47073 * 60.00228 * 19 18 17 47 47 H 0.96998 * 119.99504 * 180.02562 * 23 22 20 48 48 H 1.08000 * 120.02730 * 180.27400 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6048 0.0011 6 6 3.3021 3.6757 0.0062 7 6 4.0561 2.5170 0.0003 8 6 5.5610 2.5980 0.0007 9 1 5.9814 1.5988 -0.1123 10 6 6.0328 3.4887 -1.1536 11 7 7.4852 3.6849 -1.0543 12 6 7.8485 4.3926 0.1814 13 6 7.4461 3.5408 1.3901 14 7 6.0236 3.1886 1.2657 15 6 5.1668 3.4010 2.2842 16 8 3.9792 3.1878 2.1341 17 7 5.6264 3.8499 3.4691 18 6 4.7138 3.9774 4.6079 19 6 5.4831 4.5034 5.8214 20 6 4.5442 4.6352 6.9928 21 1 3.5029 4.3707 6.8826 22 6 5.0143 5.0944 8.2049 23 7 6.2822 5.4170 8.3388 24 14 3.8507 5.2571 9.6570 25 1 3.2701 3.9283 9.9775 26 1 4.5972 5.7677 10.8348 27 1 2.7596 6.2041 9.3134 28 6 3.4312 1.2848 -0.0001 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2129 2.3204 0.0014 33 1 1.3341 4.5113 0.0019 34 1 3.7924 4.6379 0.0111 35 1 5.7946 3.0098 -2.1034 36 1 5.5302 4.4542 -1.0969 37 1 7.8410 4.1685 -1.8652 38 1 7.3237 5.3472 0.2183 39 1 8.9242 4.5674 0.2015 40 1 7.6040 4.1086 2.3070 41 1 8.0476 2.6321 1.4141 42 1 6.5614 4.0885 3.5677 43 1 3.9130 4.6725 4.3558 44 1 4.2878 3.0021 4.8431 45 1 6.2837 3.8080 6.0735 46 1 5.9094 5.4786 5.5866 47 1 6.6130 5.7397 9.1916 48 1 4.0207 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891769030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:23 Heat of formation + Delta-G solvation = -33.593652 kcal Electronic energy + Delta-G solvation = -29413.397298 eV Core-core repulsion = 25468.631407 eV Total energy + Delta-G solvation = -3944.765891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96146 -40.65633 -38.95482 -38.10644 -36.51284 -34.99743 -34.58766 -33.47505 -31.54306 -31.22293 -30.00070 -28.15890 -27.56607 -26.38286 -24.86885 -23.62729 -23.11321 -22.44928 -22.07807 -20.47225 -19.44116 -18.50758 -18.13805 -17.36586 -17.09690 -16.89017 -16.85280 -16.57994 -16.50886 -16.42751 -15.74517 -15.65193 -15.42560 -15.09379 -14.95705 -14.51673 -14.40479 -14.26931 -13.95569 -13.72203 -13.42633 -13.18842 -13.02145 -12.92367 -12.66642 -12.55356 -12.45392 -12.37918 -12.22238 -12.10490 -12.01368 -11.66067 -11.59835 -11.44719 -10.94558 -10.60291 -10.14037 -9.73570 -9.50793 -9.24093 -8.70119 -8.24481 -6.34873 0.44277 0.67395 1.40793 1.43263 1.51071 1.69777 2.22669 2.39412 2.42447 2.86750 3.10121 3.10346 3.17475 3.75388 3.87604 3.91022 3.99170 4.16805 4.19481 4.26797 4.30289 4.35491 4.38835 4.44464 4.49627 4.52308 4.58402 4.64242 4.72117 4.76310 4.84734 4.86538 4.88427 5.02161 5.15965 5.31069 5.42049 5.46453 5.53608 5.58292 5.58708 5.72584 5.78673 5.87347 5.91229 5.98579 6.17014 6.45452 6.56498 6.77749 7.03409 7.34336 7.65260 8.87253 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.003428 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.632606 B = 8166.934099 C =10493.813376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.340 6.340 3 C 0.108 3.892 4 C -0.215 4.215 5 C -0.098 4.098 6 C -0.097 4.097 7 C -0.013 4.013 8 C 0.205 3.795 9 H 0.089 0.911 10 C 0.060 3.940 11 N -0.686 5.686 12 C 0.048 3.952 13 C 0.107 3.893 14 N -0.627 5.627 15 C 0.691 3.309 16 O -0.593 6.593 17 N -0.738 5.738 18 C 0.167 3.833 19 C 0.027 3.973 20 C -0.547 4.547 21 H 0.057 0.943 22 C 0.009 3.991 23 N -0.926 5.926 24 Si 0.964 3.036 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.268 1.268 28 C -0.161 4.161 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.034 0.966 37 H 0.362 0.638 38 H 0.029 0.971 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.400 0.600 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.006 0.994 46 H 0.007 0.993 47 H 0.266 0.734 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 -4.918 -23.747 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.254 6.254 3 C 0.063 3.937 4 C -0.234 4.234 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.014 4.014 8 C 0.101 3.899 9 H 0.107 0.893 10 C -0.071 4.071 11 N -0.319 5.319 12 C -0.082 4.082 13 C -0.015 4.015 14 N -0.365 5.365 15 C 0.393 3.607 16 O -0.472 6.472 17 N -0.395 5.395 18 C 0.043 3.957 19 C -0.011 4.011 20 C -0.586 4.586 21 H 0.075 0.925 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.788 3.212 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.193 1.193 28 C -0.180 4.180 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.052 0.948 37 H 0.183 0.817 38 H 0.048 0.952 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.237 0.763 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.075 0.925 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.405 -5.820 -23.440 24.193 hybrid contribution -0.568 1.359 1.163 1.877 sum -1.973 -4.461 -22.277 22.805 Atomic orbital electron populations 1.23257 0.76894 1.05262 1.01816 1.85996 1.23148 1.27118 1.89186 1.18975 0.92400 0.84469 0.97847 1.21238 1.00309 0.92174 1.09634 1.20922 0.94620 0.97368 0.98681 1.20523 0.93918 0.96975 1.00188 1.19197 0.94143 0.92605 0.95455 1.20101 0.89504 0.97724 0.82546 0.89349 1.22268 0.88599 0.98205 0.98002 1.60143 1.11704 1.54601 1.05438 1.22320 1.02526 0.94010 0.89318 1.21961 0.79946 1.00549 0.99094 1.47426 1.09075 1.66887 1.13118 1.16260 0.85125 0.78548 0.80722 1.91055 1.15281 1.59546 1.81349 1.45517 1.13597 1.70574 1.09810 1.20961 0.91716 0.98761 0.84293 1.19090 0.95285 0.95311 0.91380 1.21417 0.96101 1.44634 0.96423 0.92501 1.25849 0.96852 0.94603 1.01699 1.70048 1.15289 1.44928 1.26250 0.85519 0.78743 0.78859 0.78058 1.19439 1.20424 1.19343 1.20144 0.91831 0.97686 1.08379 0.92968 0.91477 0.86288 0.84452 0.85305 0.87871 0.87664 0.94786 0.81740 0.95226 0.86728 0.89702 0.89662 0.76325 0.94124 0.94412 0.97545 0.97478 0.92507 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.34 -9.33 10.50 -92.47 -0.97 -10.30 16 3 C 0.11 3.23 6.69 22.51 0.15 3.39 16 4 C -0.21 -5.99 9.04 22.37 0.20 -5.78 16 5 C -0.10 -2.79 10.03 22.26 0.22 -2.57 16 6 C -0.10 -2.87 6.24 22.28 0.14 -2.73 16 7 C -0.01 -0.37 2.92 -19.88 -0.06 -0.42 16 8 C 0.20 4.89 3.25 44.22 0.14 5.03 16 9 H 0.09 2.04 7.90 -2.39 -0.02 2.02 16 10 C 0.06 1.04 5.85 86.39 0.51 1.55 16 11 N -0.69 -9.71 6.81 -512.88 -3.49 -13.21 16 12 C 0.05 0.72 6.71 86.37 0.58 1.30 16 13 C 0.11 2.13 6.53 86.35 0.56 2.69 16 14 N -0.63 -16.73 3.01 -816.12 -2.46 -19.19 16 15 C 0.69 24.47 8.04 179.05 1.44 25.91 16 16 O -0.59 -24.37 11.29 -4.00 -0.05 -24.42 16 17 N -0.74 -27.03 5.47 -478.52 -2.62 -29.64 16 18 C 0.17 7.47 5.62 86.38 0.49 7.96 16 19 C 0.03 1.38 5.09 29.85 0.15 1.53 16 20 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 21 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 22 C 0.01 0.50 5.46 84.66 0.46 0.96 16 23 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 24 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C -0.16 -4.85 9.49 22.36 0.21 -4.64 16 29 H 0.05 0.96 7.66 -2.39 -0.02 0.94 16 30 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 31 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.14 3.11 6.30 -2.91 -0.02 3.10 16 33 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.10 3.02 7.16 -2.91 -0.02 3.00 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.03 0.66 6.86 -2.39 -0.02 0.64 16 37 H 0.36 3.46 8.90 -89.70 -0.80 2.66 16 38 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.68 5.73 -2.39 -0.01 1.67 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.40 12.82 6.01 -92.71 -0.56 12.26 16 43 H 0.04 1.90 8.14 -2.39 -0.02 1.89 16 44 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 48 H 0.12 3.48 7.96 -2.91 -0.02 3.45 16 Total: -1.00 -71.65 380.62 -1.10 -72.74 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.37 Total: 27.41 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.55 Total: 4.84 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -8.28 Total: -116.29 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.02 Total: -34.72 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.65 -1.10 -72.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.150 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds