Wall clock time and date at job start Tue Mar 31 2020 17:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36013 * 117.00077 * 2 1 4 4 C 1.38501 * 120.08218 * 0.28137 * 3 2 1 5 5 C 1.38280 * 120.01932 * 180.27000 * 4 3 2 6 6 C 1.38257 * 120.18014 * 359.72374 * 5 4 3 7 7 C 1.38224 * 120.16098 * 359.97438 * 6 5 4 8 8 C 1.38727 * 119.97836 * 0.02562 * 7 6 5 9 9 N 1.39960 * 120.08764 * 179.97438 * 8 7 6 10 10 C 1.46259 * 111.00638 * 253.03152 * 9 8 7 11 11 C 1.47536 * 114.37854 * 148.55494 * 10 9 8 12 12 C 1.54952 * 109.68769 * 62.24529 * 11 10 9 13 13 N 1.44698 * 109.51158 * 290.43796 * 12 11 10 14 14 C 1.34778 * 118.59819 * 269.14605 * 13 12 11 15 15 O 1.21591 * 119.99404 * 185.22780 * 14 13 12 16 16 N 1.34772 * 120.00121 * 5.23378 * 14 13 12 17 17 C 1.46505 * 119.99687 * 185.11945 * 16 14 13 18 18 C 1.50694 * 109.47035 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00321 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00064 * 179.97438 * 18 17 16 21 21 N 1.31504 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47090 * 90.00454 * 22 20 18 24 24 H 1.48496 * 109.47013 * 210.00166 * 22 20 18 25 25 H 1.48501 * 109.47357 * 330.00528 * 22 20 18 26 26 C 1.47779 * 122.84950 * 89.15700 * 13 12 11 27 27 C 1.44770 * 110.99647 * 129.53958 * 9 8 7 28 28 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47135 * 299.99519 * 1 2 3 30 30 H 1.09008 * 109.46800 * 59.99828 * 1 2 3 31 31 H 1.08004 * 119.98867 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.91091 * 179.74756 * 5 4 3 33 33 H 1.07999 * 119.91616 * 180.02562 * 6 5 4 34 34 H 1.07991 * 120.00911 * 179.97438 * 7 6 5 35 35 H 1.09004 * 108.50220 * 27.28847 * 10 9 8 36 36 H 1.09006 * 108.38074 * 269.74045 * 10 9 8 37 37 H 1.08999 * 109.43220 * 182.30221 * 11 10 9 38 38 H 1.09000 * 109.43061 * 302.19591 * 11 10 9 39 39 H 1.09003 * 109.46132 * 50.51383 * 12 11 10 40 40 H 1.09005 * 109.46008 * 170.48110 * 12 11 10 41 41 H 0.96993 * 120.00271 * 5.12312 * 16 14 13 42 42 H 1.09003 * 109.47325 * 300.00170 * 17 16 14 43 43 H 1.08997 * 109.47025 * 60.00133 * 17 16 14 44 44 H 0.96999 * 120.00092 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.06094 * 197.56979 * 26 13 12 46 46 H 1.09001 * 109.06226 * 78.64524 * 26 13 12 47 47 H 1.08998 * 109.43182 * 337.92443 * 27 9 8 48 48 H 1.08995 * 109.44032 * 97.79802 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2939 2.3745 0.0059 5 6 1.9230 3.6059 0.0002 6 6 3.3035 3.6811 -0.0055 7 6 4.0619 2.5255 -0.0051 8 6 3.4377 1.2867 0.0005 9 7 4.2034 0.1151 0.0004 10 6 4.1515 -0.5450 -1.3037 11 6 5.3778 -1.2829 -1.6621 12 6 5.6175 -2.4240 -0.6416 13 7 5.9880 -1.8583 0.6377 14 6 7.2950 -1.6624 0.9022 15 8 7.6415 -1.2784 2.0026 16 7 8.2177 -1.8919 -0.0530 17 6 9.6437 -1.7876 0.2661 18 6 10.4574 -2.0903 -0.9657 19 1 9.9619 -2.3353 -1.8936 20 6 11.8345 -2.0533 -0.9085 21 7 12.4379 -1.7544 0.2211 22 14 12.8431 -2.4277 -2.4356 23 1 13.0885 -1.1707 -3.1873 24 1 14.1417 -3.0272 -2.0364 25 1 12.1010 -3.3828 -3.2972 26 6 4.9955 -1.4862 1.6673 27 6 3.7712 -0.7872 1.0467 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2152 2.3193 0.0101 32 1 1.3343 4.5115 0.0007 33 1 3.7904 4.6451 -0.0095 34 1 5.1401 2.5871 -0.0101 35 1 3.9671 0.2109 -2.0670 36 1 3.3151 -1.2441 -1.3020 37 1 5.2675 -1.7064 -2.6603 38 1 6.2280 -0.6009 -1.6496 39 1 4.7047 -3.0093 -0.5303 40 1 6.4207 -3.0683 -0.9993 41 1 7.9376 -2.1260 -0.9516 42 1 9.8663 -0.7775 0.6099 43 1 9.8937 -2.5018 1.0506 44 1 13.4067 -1.7280 0.2613 45 1 5.4633 -0.8134 2.3860 46 1 4.6664 -2.3864 2.1864 47 1 3.2460 -0.2234 1.8177 48 1 3.1007 -1.5362 0.6257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894485909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:25 Heat of formation + Delta-G solvation = -12.280984 kcal Electronic energy + Delta-G solvation = -29623.484547 eV Core-core repulsion = 25679.642843 eV Total energy + Delta-G solvation = -3943.841704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02937 -39.62599 -38.03500 -37.26562 -34.78592 -34.18373 -32.66732 -32.07589 -30.67829 -30.13394 -28.02280 -27.40647 -26.47995 -25.81494 -22.98901 -22.50820 -22.25845 -21.32679 -20.65136 -18.95679 -18.37706 -17.74647 -16.84071 -16.52213 -16.18145 -15.95419 -15.84057 -15.11587 -15.08419 -14.75516 -14.59766 -14.28718 -14.10847 -13.96422 -13.54042 -13.12490 -12.98773 -12.87159 -12.64644 -12.44817 -12.28350 -11.93453 -11.73845 -11.63613 -11.53713 -11.42023 -11.29399 -11.19222 -10.88772 -10.83523 -10.80608 -10.59133 -10.20348 -9.27135 -9.13771 -9.08927 -8.63155 -8.58358 -8.28496 -8.12243 -7.54876 -6.07236 -4.13024 1.08335 1.20135 2.92628 3.29777 3.34004 3.36887 3.41525 3.51209 3.79526 4.11362 4.38812 4.54661 4.60900 4.77569 4.78379 4.84116 4.97532 4.99597 5.05861 5.11323 5.12722 5.17634 5.28709 5.28820 5.41976 5.44391 5.58806 5.62697 5.65431 5.71326 5.89471 5.94028 5.97761 6.03264 6.14834 6.22195 6.30970 6.38755 6.50826 6.94602 7.03910 7.10102 7.29389 7.44807 7.64154 7.69610 7.70950 8.00875 8.14067 8.87397 9.08193 9.46284 9.62933 11.03140 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.002747 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.840313 B =10191.296425 C =10541.515685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.093 3.907 4 C -0.204 4.204 5 C -0.089 4.089 6 C -0.149 4.149 7 C -0.058 4.058 8 C 0.068 3.932 9 N -0.483 5.483 10 C 0.074 3.926 11 C -0.144 4.144 12 C 0.118 3.882 13 N -0.621 5.621 14 C 0.696 3.304 15 O -0.602 6.602 16 N -0.730 5.730 17 C 0.267 3.733 18 C -0.538 4.538 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.141 3.859 27 C 0.056 3.944 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.265 0.735 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.665 5.535 -3.523 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.046 3.954 4 C -0.224 4.224 5 C -0.107 4.107 6 C -0.168 4.168 7 C -0.077 4.077 8 C -0.027 4.027 9 N -0.203 5.203 10 C -0.052 4.052 11 C -0.184 4.184 12 C -0.007 4.007 13 N -0.358 5.358 14 C 0.397 3.603 15 O -0.482 6.482 16 N -0.384 5.384 17 C 0.145 3.855 18 C -0.577 4.577 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.524 5.524 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C 0.017 3.983 27 C -0.072 4.072 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.220 0.780 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.606 5.704 -2.528 27.328 hybrid contribution -0.697 -0.269 -1.428 1.612 sum -27.303 5.435 -3.957 28.118 Atomic orbital electron populations 1.23028 0.78758 1.03810 1.01176 1.86171 1.21123 1.26570 1.88871 1.19897 0.92631 0.84619 0.98245 1.21127 0.99750 0.92330 1.09151 1.20944 0.94751 0.96814 0.98202 1.21061 0.93716 0.98454 1.03541 1.21025 1.00823 0.89827 0.96032 1.18382 0.86220 0.92459 1.05604 1.58368 1.52840 1.04252 1.04791 1.20919 0.97673 0.97213 0.89362 1.21553 0.99306 0.98746 0.98755 1.21399 1.00939 0.94614 0.83798 1.46739 1.04876 1.67597 1.16627 1.16119 0.80479 0.78751 0.84932 1.90835 1.79880 1.54157 1.23309 1.45829 1.08028 1.73249 1.11269 1.18930 0.72846 0.97389 0.96288 1.21230 0.91427 1.49015 0.95995 0.92098 1.24936 0.97681 0.95007 0.96412 1.69980 1.09610 1.47502 1.25261 0.86445 0.79499 0.78489 0.82619 1.20534 1.21094 1.19808 1.21633 0.88177 0.98492 0.89981 1.22438 0.95798 0.94840 0.94125 0.88343 0.92758 0.92846 0.85765 0.85948 0.85549 0.84423 0.92181 0.93950 0.90318 0.90270 0.91336 0.90486 0.78047 0.95783 0.96053 0.92564 0.89237 0.92636 0.90828 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.03 7.48 -19.78 -0.15 -3.17 16 3 C 0.09 0.99 6.04 -39.08 -0.24 0.76 16 4 C -0.20 -1.84 9.04 -39.47 -0.36 -2.20 16 5 C -0.09 -0.77 10.04 -39.56 -0.40 -1.17 16 6 C -0.15 -1.44 10.04 -39.58 -0.40 -1.84 16 7 C -0.06 -0.69 9.97 -39.41 -0.39 -1.08 16 8 C 0.07 0.84 4.25 -83.56 -0.36 0.48 16 9 N -0.48 -6.32 4.13 -175.65 -0.72 -7.05 16 10 C 0.07 0.88 4.46 -6.81 -0.03 0.85 16 11 C -0.14 -1.74 5.89 -28.34 -0.17 -1.91 16 12 C 0.12 1.55 5.10 -3.97 -0.02 1.53 16 13 N -0.62 -10.41 2.53 -177.92 -0.45 -10.86 16 14 C 0.70 15.42 8.20 -86.92 -0.71 14.71 16 15 O -0.60 -15.91 15.67 5.29 0.08 -15.82 16 16 N -0.73 -16.55 5.30 -66.41 -0.35 -16.90 16 17 C 0.27 7.40 5.43 -5.19 -0.03 7.38 16 18 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 19 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 22 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 26 C 0.14 2.10 6.42 -2.80 -0.02 2.09 16 27 C 0.06 0.70 4.02 -4.43 -0.02 0.68 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 30 H 0.05 0.27 7.68 -51.92 -0.40 -0.13 16 31 H 0.12 0.84 6.30 -52.48 -0.33 0.51 16 32 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 36 H 0.04 0.47 6.80 -51.93 -0.35 0.12 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 39 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.08 1.04 6.46 -51.93 -0.34 0.70 16 41 H 0.39 7.64 6.02 -40.82 -0.25 7.39 16 42 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.09 1.57 7.03 -51.93 -0.37 1.20 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 48 H 0.05 0.62 6.38 -51.93 -0.33 0.29 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -34.61 378.97 -10.01 -44.62 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.29 Total: 5.42 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -2.55 Total: 7.79 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.79 Total: -60.76 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.07 Total: -19.00 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.61 -10.01 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.341 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds