Wall clock time and date at job start Tue Mar 31 2020 17:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36013 * 117.00077 * 2 1 4 4 C 1.38501 * 120.08218 * 0.28137 * 3 2 1 5 5 C 1.38280 * 120.01932 * 180.27000 * 4 3 2 6 6 C 1.38257 * 120.18014 * 359.72374 * 5 4 3 7 7 C 1.38224 * 120.16098 * 359.97438 * 6 5 4 8 8 C 1.38727 * 119.97836 * 0.02562 * 7 6 5 9 9 N 1.39960 * 120.08764 * 179.97438 * 8 7 6 10 10 C 1.46259 * 111.00638 * 253.03152 * 9 8 7 11 11 C 1.47536 * 114.37854 * 148.55494 * 10 9 8 12 12 C 1.54952 * 109.68769 * 62.24529 * 11 10 9 13 13 N 1.44698 * 109.51158 * 290.43796 * 12 11 10 14 14 C 1.34778 * 118.59819 * 269.14605 * 13 12 11 15 15 O 1.21591 * 119.99404 * 185.22780 * 14 13 12 16 16 N 1.34772 * 120.00121 * 5.23378 * 14 13 12 17 17 C 1.46505 * 119.99687 * 185.11945 * 16 14 13 18 18 C 1.50694 * 109.47035 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00321 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00064 * 179.97438 * 18 17 16 21 21 N 1.31504 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47090 * 90.00454 * 22 20 18 24 24 H 1.48496 * 109.47013 * 210.00166 * 22 20 18 25 25 H 1.48501 * 109.47357 * 330.00528 * 22 20 18 26 26 C 1.47779 * 122.84950 * 89.15700 * 13 12 11 27 27 C 1.44770 * 110.99647 * 129.53958 * 9 8 7 28 28 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47135 * 299.99519 * 1 2 3 30 30 H 1.09008 * 109.46800 * 59.99828 * 1 2 3 31 31 H 1.08004 * 119.98867 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.91091 * 179.74756 * 5 4 3 33 33 H 1.07999 * 119.91616 * 180.02562 * 6 5 4 34 34 H 1.07991 * 120.00911 * 179.97438 * 7 6 5 35 35 H 1.09004 * 108.50220 * 27.28847 * 10 9 8 36 36 H 1.09006 * 108.38074 * 269.74045 * 10 9 8 37 37 H 1.08999 * 109.43220 * 182.30221 * 11 10 9 38 38 H 1.09000 * 109.43061 * 302.19591 * 11 10 9 39 39 H 1.09003 * 109.46132 * 50.51383 * 12 11 10 40 40 H 1.09005 * 109.46008 * 170.48110 * 12 11 10 41 41 H 0.96993 * 120.00271 * 5.12312 * 16 14 13 42 42 H 1.09003 * 109.47325 * 300.00170 * 17 16 14 43 43 H 1.08997 * 109.47025 * 60.00133 * 17 16 14 44 44 H 0.96999 * 120.00092 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.06094 * 197.56979 * 26 13 12 46 46 H 1.09001 * 109.06226 * 78.64524 * 26 13 12 47 47 H 1.08998 * 109.43182 * 337.92443 * 27 9 8 48 48 H 1.08995 * 109.44032 * 97.79802 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2939 2.3745 0.0059 5 6 1.9230 3.6059 0.0002 6 6 3.3035 3.6811 -0.0055 7 6 4.0619 2.5255 -0.0051 8 6 3.4377 1.2867 0.0005 9 7 4.2034 0.1151 0.0004 10 6 4.1515 -0.5450 -1.3037 11 6 5.3778 -1.2829 -1.6621 12 6 5.6175 -2.4240 -0.6416 13 7 5.9880 -1.8583 0.6377 14 6 7.2950 -1.6624 0.9022 15 8 7.6415 -1.2784 2.0026 16 7 8.2177 -1.8919 -0.0530 17 6 9.6437 -1.7876 0.2661 18 6 10.4574 -2.0903 -0.9657 19 1 9.9619 -2.3353 -1.8936 20 6 11.8345 -2.0533 -0.9085 21 7 12.4379 -1.7544 0.2211 22 14 12.8431 -2.4277 -2.4356 23 1 13.0885 -1.1707 -3.1873 24 1 14.1417 -3.0272 -2.0364 25 1 12.1010 -3.3828 -3.2972 26 6 4.9955 -1.4862 1.6673 27 6 3.7712 -0.7872 1.0467 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2152 2.3193 0.0101 32 1 1.3343 4.5115 0.0007 33 1 3.7904 4.6451 -0.0095 34 1 5.1401 2.5871 -0.0101 35 1 3.9671 0.2109 -2.0670 36 1 3.3151 -1.2441 -1.3020 37 1 5.2675 -1.7064 -2.6603 38 1 6.2280 -0.6009 -1.6496 39 1 4.7047 -3.0093 -0.5303 40 1 6.4207 -3.0683 -0.9993 41 1 7.9376 -2.1260 -0.9516 42 1 9.8663 -0.7775 0.6099 43 1 9.8937 -2.5018 1.0506 44 1 13.4067 -1.7280 0.2613 45 1 5.4633 -0.8134 2.3860 46 1 4.6664 -2.3864 2.1864 47 1 3.2460 -0.2234 1.8177 48 1 3.1007 -1.5362 0.6257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894485909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:24 Heat of formation + Delta-G solvation = -35.727355 kcal Electronic energy + Delta-G solvation = -29624.501258 eV Core-core repulsion = 25679.642843 eV Total energy + Delta-G solvation = -3944.858415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91923 -41.04126 -39.07436 -38.13418 -36.20587 -36.09015 -34.33804 -33.63293 -31.58497 -30.96319 -29.40002 -28.39386 -27.80535 -26.91828 -24.86271 -23.45613 -23.02529 -22.79798 -21.60561 -20.68099 -19.37841 -19.01316 -18.03053 -17.84944 -17.49513 -17.00500 -16.67925 -16.55487 -16.45590 -16.18961 -15.72941 -15.41931 -15.15774 -14.91796 -14.76735 -14.52868 -14.42677 -14.06289 -13.98436 -13.63168 -13.57343 -13.26790 -13.00603 -12.84465 -12.69346 -12.55476 -12.52861 -12.35565 -12.17971 -12.09288 -11.99217 -11.84086 -11.60809 -11.44214 -11.02073 -10.77386 -9.94826 -9.87045 -9.44528 -9.28528 -9.01391 -8.25686 -6.42211 0.31445 0.45116 1.44077 1.47536 1.58443 1.88488 2.31370 2.34014 2.41098 2.75263 2.85186 3.08926 3.33986 3.85172 3.89610 3.97194 4.02473 4.06999 4.11396 4.29054 4.39058 4.41178 4.43629 4.47209 4.58595 4.59420 4.66134 4.73460 4.78491 4.81584 4.86505 4.89935 4.94834 5.01422 5.13410 5.27980 5.30599 5.35615 5.40687 5.52350 5.56769 5.68849 5.76642 5.85209 5.89409 6.12841 6.21084 6.26473 6.60581 6.69482 7.26687 7.30675 7.79800 8.86972 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.002747 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.840313 B =10191.296425 C =10541.515685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.092 3.908 4 C -0.203 4.203 5 C -0.085 4.085 6 C -0.154 4.154 7 C -0.082 4.082 8 C 0.045 3.955 9 N -0.506 5.506 10 C 0.078 3.922 11 C -0.136 4.136 12 C 0.110 3.890 13 N -0.606 5.606 14 C 0.690 3.310 15 O -0.653 6.653 16 N -0.723 5.723 17 C 0.287 3.713 18 C -0.552 4.552 19 H 0.082 0.918 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.987 3.013 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.254 1.254 26 C 0.138 3.862 27 C 0.074 3.926 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.402 0.598 42 H -0.020 1.020 43 H -0.017 1.017 44 H 0.268 0.732 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.641 4.926 -6.162 31.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.044 3.956 4 C -0.222 4.222 5 C -0.103 4.103 6 C -0.173 4.173 7 C -0.101 4.101 8 C -0.050 4.050 9 N -0.226 5.226 10 C -0.048 4.048 11 C -0.175 4.175 12 C -0.013 4.013 13 N -0.342 5.342 14 C 0.391 3.609 15 O -0.537 6.537 16 N -0.378 5.378 17 C 0.164 3.836 18 C -0.590 4.590 19 H 0.100 0.900 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.809 3.191 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.177 1.177 26 C 0.015 3.985 27 C -0.055 4.055 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.158 0.842 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.239 0.761 42 H -0.002 1.002 43 H 0.001 0.999 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.678 5.081 -5.213 30.558 hybrid contribution 0.094 -0.036 -0.543 0.552 sum -29.584 5.045 -5.756 30.559 Atomic orbital electron populations 1.23295 0.76746 1.05331 1.02068 1.86127 1.23147 1.26110 1.88715 1.19847 0.92052 0.85669 0.98009 1.21464 1.01062 0.91779 1.07885 1.21307 0.94336 0.98028 0.96597 1.21262 0.94498 0.98267 1.03234 1.21021 1.00098 0.91081 0.97889 1.18418 0.87287 0.91911 1.07350 1.58284 1.54003 1.04871 1.05436 1.20892 0.97743 0.97322 0.88826 1.21524 0.98267 0.97707 1.00032 1.21728 1.02356 0.95196 0.82051 1.46764 1.02884 1.66207 1.18358 1.16357 0.82161 0.78355 0.83989 1.90793 1.81225 1.56312 1.25349 1.45424 1.06314 1.73736 1.12305 1.18356 0.75863 0.93642 0.95748 1.21569 0.91976 1.49106 0.96326 0.89984 1.26084 0.99099 0.94252 1.00195 1.70152 1.10195 1.48464 1.28217 0.85137 0.77308 0.78792 0.77834 1.19666 1.20880 1.17725 1.21817 0.88349 0.99019 0.89359 1.22252 0.94188 0.94945 0.94094 0.86645 0.91897 0.91832 0.83149 0.83007 0.84152 0.86676 0.92372 0.92389 0.87138 0.93506 0.87894 0.90601 0.76132 1.00233 0.99916 0.92275 0.92717 0.90527 0.90793 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.43 7.48 -93.70 -0.70 -6.13 16 3 C 0.09 1.79 6.04 22.59 0.14 1.93 16 4 C -0.20 -3.11 9.04 22.34 0.20 -2.91 16 5 C -0.08 -1.27 10.04 22.28 0.22 -1.05 16 6 C -0.15 -2.89 10.04 22.27 0.22 -2.67 16 7 C -0.08 -2.01 9.97 22.38 0.22 -1.79 16 8 C 0.04 1.09 4.25 38.22 0.16 1.26 16 9 N -0.51 -13.15 4.13 -709.62 -2.93 -16.08 16 10 C 0.08 1.72 4.46 84.72 0.38 2.10 16 11 C -0.14 -3.09 5.89 29.55 0.17 -2.92 16 12 C 0.11 2.71 5.10 87.38 0.45 3.16 16 13 N -0.61 -20.52 2.53 -835.08 -2.12 -22.64 16 14 C 0.69 32.09 8.20 179.06 1.47 33.56 16 15 O -0.65 -36.95 15.67 -4.00 -0.06 -37.02 16 16 N -0.72 -34.12 5.30 -482.30 -2.55 -36.68 16 17 C 0.29 16.89 5.43 85.63 0.47 17.36 16 18 C -0.55 -31.29 9.28 25.60 0.24 -31.06 16 19 H 0.08 4.21 7.60 -2.91 -0.02 4.18 16 20 C 0.00 0.18 5.46 84.66 0.46 0.64 16 21 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 22 Si 0.99 43.37 29.54 68.60 2.03 45.39 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 26 C 0.14 4.15 6.42 86.48 0.56 4.70 16 27 C 0.07 1.76 4.02 87.05 0.35 2.11 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.43 7.65 -2.39 -0.02 0.41 16 30 H 0.06 0.41 7.68 -2.38 -0.02 0.40 16 31 H 0.15 1.45 6.30 -2.91 -0.02 1.44 16 32 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.12 3.21 8.06 -2.92 -0.02 3.18 16 35 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 36 H 0.06 1.11 6.80 -2.38 -0.02 1.09 16 37 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 39 H 0.10 1.91 8.09 -2.39 -0.02 1.89 16 40 H 0.08 1.92 6.46 -2.38 -0.02 1.90 16 41 H 0.40 16.09 6.02 -92.71 -0.56 15.53 16 42 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 43 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.05 2.04 7.03 -2.39 -0.02 2.02 16 46 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.07 1.77 7.30 -2.39 -0.02 1.75 16 48 H 0.07 1.47 6.38 -2.39 -0.02 1.46 16 Total: -1.00 -80.44 378.97 1.18 -79.26 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.41 Total: 25.88 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 6.82 Total: 25.70 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -7.32 Total: -133.09 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.76 Total: -43.15 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -80.44 1.18 -79.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.537 kcal (2) G-P(sol) polarization free energy of solvation -80.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds