Wall clock time and date at job start Tue Mar 31 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00131 * 2 1 4 4 C 1.53001 * 109.47331 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47104 * 67.40542 * 4 3 2 6 6 C 1.46501 * 120.00074 * 278.01384 * 5 4 3 7 7 C 1.50693 * 109.47096 * 270.00011 * 6 5 4 8 8 H 1.08003 * 120.00430 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99946 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00110 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99821 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47605 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46876 * 120.00357 * 11 9 7 14 14 H 1.48503 * 109.47146 * 240.00078 * 11 9 7 15 15 C 1.34774 * 119.99873 * 98.01441 * 5 4 3 16 16 O 1.21506 * 120.00069 * 186.05364 * 15 5 4 17 17 C 1.48168 * 119.99769 * 6.05125 * 15 5 4 18 18 C 1.40011 * 120.88359 * 315.80321 * 17 15 5 19 19 C 1.37949 * 119.17524 * 180.02562 * 18 17 15 20 20 N 1.31915 * 121.00216 * 359.73451 * 19 18 17 21 21 C 1.32327 * 121.94483 * 0.53681 * 20 19 18 22 22 N 1.39023 * 119.64583 * 179.74407 * 21 20 19 23 23 C 1.46498 * 120.00165 * 179.72283 * 22 21 20 24 24 C 1.53781 * 113.61871 * 252.50113 * 23 22 21 25 25 C 1.53778 * 87.08025 * 220.01849 * 24 23 22 26 26 C 1.53773 * 87.08332 * 25.43322 * 25 24 23 27 27 C 1.39117 * 120.70642 * 359.47093 * 21 20 19 28 28 H 1.09004 * 109.47143 * 59.99927 * 1 2 3 29 29 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47283 * 299.99680 * 1 2 3 31 31 H 1.09000 * 109.46499 * 59.99984 * 3 2 1 32 32 H 1.09000 * 109.47054 * 300.00472 * 3 2 1 33 33 H 1.09004 * 109.46621 * 307.40878 * 4 3 2 34 34 H 1.08994 * 109.46950 * 187.40911 * 4 3 2 35 35 H 1.09003 * 109.46858 * 30.00437 * 6 5 4 36 36 H 1.08997 * 109.46686 * 149.99667 * 6 5 4 37 37 H 0.96994 * 119.99979 * 179.97438 * 10 9 7 38 38 H 1.07997 * 120.41293 * 359.97438 * 18 17 15 39 39 H 1.08006 * 119.49570 * 180.02562 * 19 18 17 40 40 H 0.97002 * 119.99602 * 0.02562 * 22 21 20 41 41 H 1.09004 * 112.84860 * 23.80923 * 23 22 21 42 42 H 1.09006 * 113.61351 * 334.56972 * 24 23 22 43 43 H 1.08999 * 113.61376 * 105.46442 * 24 23 22 44 44 H 1.08994 * 113.61190 * 270.87965 * 25 24 23 45 45 H 1.09007 * 113.60908 * 139.98139 * 25 24 23 46 46 H 1.08998 * 113.61606 * 220.01681 * 26 25 24 47 47 H 1.09001 * 113.69244 * 89.12926 * 26 25 24 48 48 H 1.07998 * 120.53165 * 180.23447 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9809 0.6169 -1.2743 6 6 3.9438 -0.8327 -1.4834 7 6 5.2530 -1.4370 -1.0454 8 1 6.0344 -0.8047 -0.6504 9 6 5.4529 -2.7973 -1.1481 10 7 4.5013 -3.5674 -1.6286 11 14 7.0760 -3.5463 -0.6059 12 1 7.9739 -2.4740 -0.1067 13 1 6.8294 -4.5298 0.4792 14 1 7.7149 -4.2308 -1.7585 15 6 4.4248 1.4280 -2.2548 16 8 4.6900 0.9702 -3.3486 17 6 4.5892 2.8782 -1.9989 18 6 3.6074 3.6027 -1.3123 19 6 3.7965 4.9516 -1.0939 20 7 4.8868 5.5620 -1.5168 21 6 5.8387 4.9196 -2.1741 22 7 6.9657 5.6115 -2.6026 23 6 8.0272 4.9067 -3.3257 24 6 9.3042 4.6971 -2.4950 25 6 10.0948 5.0239 -3.7729 26 6 8.8639 5.8207 -4.2364 27 6 5.7263 3.5579 -2.4360 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8480 0.5337 0.8172 34 1 3.9780 2.1719 0.1332 35 1 3.1311 -1.2634 -0.8986 36 1 3.7820 -1.0431 -2.5405 37 1 4.6421 -4.5244 -1.7011 38 1 2.7127 3.1118 -0.9589 39 1 3.0426 5.5154 -0.5645 40 1 7.0513 6.5602 -2.4190 41 1 7.6735 4.0024 -3.8209 42 1 9.4343 5.4326 -1.7010 43 1 9.4370 3.6719 -2.1495 44 1 10.3076 4.1509 -4.3899 45 1 10.9743 5.6430 -3.5959 46 1 8.6412 5.7025 -5.2969 47 1 8.8724 6.8635 -3.9195 48 1 6.5067 3.0356 -2.9695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900560803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:26 Heat of formation + Delta-G solvation = -24.188793 kcal Electronic energy + Delta-G solvation = -29149.986342 eV Core-core repulsion = 25205.628276 eV Total energy + Delta-G solvation = -3944.358066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83861 -40.49880 -39.54238 -38.79913 -36.67504 -35.46443 -34.77293 -33.47395 -31.35546 -30.25333 -29.23967 -27.11852 -26.59480 -26.27180 -25.80637 -24.32041 -23.79087 -23.32981 -20.91955 -20.38770 -18.86044 -18.61884 -18.17725 -17.90435 -17.35362 -17.06135 -16.69618 -16.52847 -16.32184 -16.10385 -15.87859 -15.82577 -15.38529 -15.12449 -14.96200 -14.50632 -14.28626 -13.95515 -13.62522 -13.48579 -13.36668 -13.25167 -13.08713 -12.94675 -12.82743 -12.65441 -12.54954 -12.20246 -12.12385 -11.98308 -11.74701 -11.68349 -11.37962 -11.23159 -10.98080 -10.76527 -10.63389 -10.50504 -10.37236 -9.50876 -8.69257 -8.20915 -6.35541 -0.09505 0.30089 1.35097 1.37243 1.49053 1.73040 2.10773 2.23098 2.40680 2.86472 2.93770 3.09278 3.36541 3.56610 3.69337 3.69993 3.90064 3.94708 3.96406 4.00372 4.14606 4.20859 4.28142 4.38298 4.48554 4.55951 4.60818 4.62428 4.68511 4.74025 4.77574 4.80668 4.89951 4.93840 5.04310 5.05253 5.11038 5.16267 5.23946 5.28441 5.36741 5.51899 5.56857 5.83109 5.99358 6.07603 6.34882 6.60189 6.65276 6.73516 7.12788 7.18479 7.36664 8.86896 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.004038 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.864044 B = 6933.285519 C = 9462.702649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.043 3.957 4 C 0.094 3.906 5 N -0.581 5.581 6 C 0.266 3.734 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.009 3.991 10 N -0.926 5.926 11 Si 0.967 3.033 12 H -0.268 1.268 13 H -0.268 1.268 14 H -0.280 1.280 15 C 0.537 3.463 16 O -0.590 6.590 17 C -0.042 4.042 18 C -0.221 4.221 19 C 0.161 3.839 20 N -0.543 5.543 21 C 0.403 3.597 22 N -0.701 5.701 23 C 0.114 3.886 24 C -0.158 4.158 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.211 4.211 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.043 0.957 36 H -0.009 1.009 37 H 0.267 0.733 38 H 0.160 0.840 39 H 0.207 0.793 40 H 0.414 0.586 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.103 0.897 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 22.609 3.732 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.034 4.034 4 C -0.029 4.029 5 N -0.309 5.309 6 C 0.146 3.854 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.190 4.190 10 N -0.565 5.565 11 Si 0.791 3.209 12 H -0.192 1.192 13 H -0.193 1.193 14 H -0.205 1.205 15 C 0.325 3.675 16 O -0.471 6.471 17 C -0.053 4.053 18 C -0.244 4.244 19 C 0.004 3.996 20 N -0.261 5.261 21 C 0.167 3.833 22 N -0.333 5.333 23 C 0.009 3.991 24 C -0.197 4.197 25 C -0.171 4.171 26 C -0.171 4.171 27 C -0.237 4.237 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.141 0.859 35 H 0.061 0.939 36 H 0.009 0.991 37 H 0.076 0.924 38 H 0.177 0.823 39 H 0.223 0.777 40 H 0.252 0.748 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.121 0.879 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.195 22.751 3.207 23.007 hybrid contribution 0.406 -1.696 -0.298 1.769 sum 1.600 21.056 2.909 21.316 Atomic orbital electron populations 1.22871 0.79942 1.03098 1.00972 1.88068 1.21244 1.28582 1.95513 1.23270 0.92731 0.85218 1.02162 1.22162 0.94002 1.01152 0.85551 1.48082 1.60530 1.08024 1.14309 1.18821 0.96620 0.74788 0.95193 1.21737 1.00917 0.93038 1.42764 0.93157 1.25837 1.00698 0.97382 0.95041 1.70076 1.34756 1.05427 1.46252 0.85379 0.78957 0.78367 0.78159 1.19214 1.19314 1.20546 1.18957 0.77414 0.86900 0.84204 1.90701 1.53095 1.77652 1.25682 1.20070 0.96153 0.92096 0.96938 1.22563 1.01247 0.96620 1.03954 1.23025 0.92992 0.90755 0.92844 1.67177 1.03369 1.39907 1.15679 1.18286 0.87949 0.87312 0.89764 1.44488 1.16696 1.11729 1.60422 1.22799 0.85203 0.96985 0.94163 1.23529 0.95736 1.02092 0.98333 1.22671 0.97350 1.00707 0.96418 1.23287 0.94523 0.99552 0.99691 1.21380 1.00276 0.94584 1.07477 0.93781 0.90236 0.91528 0.87890 0.92495 0.90487 0.85942 0.93908 0.99106 0.92437 0.82285 0.77684 0.74850 0.89109 0.88838 0.92531 0.89948 0.89181 0.90418 0.87892 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.31 8.94 -148.98 -1.33 -15.64 16 3 C 0.04 1.15 5.22 71.98 0.38 1.53 16 4 C 0.09 3.12 5.34 86.38 0.46 3.58 16 5 N -0.58 -26.57 2.46 -829.23 -2.04 -28.61 16 6 C 0.27 15.26 5.07 85.63 0.43 15.69 16 7 C -0.55 -32.93 9.39 25.60 0.24 -32.69 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.01 0.57 5.46 84.66 0.46 1.03 16 10 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 11 Si 0.97 46.25 29.54 68.60 2.03 48.28 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 15 C 0.54 24.87 7.34 86.88 0.64 25.50 16 16 O -0.59 -33.25 16.55 -3.73 -0.06 -33.31 16 17 C -0.04 -1.46 5.15 -19.90 -0.10 -1.56 16 18 C -0.22 -5.56 7.50 22.63 0.17 -5.40 16 19 C 0.16 3.27 11.16 84.61 0.94 4.21 16 20 N -0.54 -13.20 10.37 -193.40 -2.00 -15.21 16 21 C 0.40 10.84 7.65 133.07 1.02 11.86 16 22 N -0.70 -14.64 5.53 -322.09 -1.78 -16.42 16 23 C 0.11 2.25 4.03 45.52 0.18 2.43 16 24 C -0.16 -2.81 7.88 31.12 0.25 -2.56 16 25 C -0.13 -1.84 8.08 31.12 0.25 -1.59 16 26 C -0.13 -1.80 7.83 31.12 0.24 -1.56 16 27 C -0.21 -7.00 8.98 22.79 0.20 -6.79 16 28 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.44 6.43 -2.39 -0.02 1.43 16 33 H 0.08 2.77 8.13 -2.39 -0.02 2.75 16 34 H 0.12 3.32 4.96 -2.39 -0.01 3.31 16 35 H 0.04 2.53 6.46 -2.39 -0.02 2.51 16 36 H -0.01 -0.61 7.35 -2.39 -0.02 -0.63 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.16 3.39 3.76 -2.91 -0.01 3.38 16 39 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.41 6.93 8.85 -92.71 -0.82 6.11 16 41 H 0.09 2.20 6.10 -2.38 -0.01 2.19 16 42 H 0.09 1.49 8.14 -2.38 -0.02 1.48 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16 48 H 0.12 4.31 6.03 -2.91 -0.02 4.29 16 Total: -1.00 -82.70 388.72 2.28 -80.42 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.17 Total: 22.43 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 7.02 Total: 15.60 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.54 Total: -117.78 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -1.39 Total: -48.95 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -82.70 2.28 -80.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900560803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.232 kcal (2) G-P(sol) polarization free energy of solvation -82.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds