Wall clock time and date at job start Tue Mar 31 2020 17:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00433 * 2 1 4 4 C 1.53001 * 108.87437 * 305.32296 * 3 2 1 5 5 N 1.46506 * 109.46901 * 301.76460 * 4 3 2 6 6 S 1.65599 * 120.00047 * 165.16260 * 5 4 3 7 7 O 1.42096 * 104.27653 * 181.34736 * 6 5 4 8 8 O 1.42100 * 104.27818 * 309.20676 * 6 5 4 9 9 C 1.81405 * 104.44589 * 65.28006 * 6 5 4 10 10 C 1.52993 * 109.47090 * 179.97438 * 9 6 5 11 11 C 1.52995 * 109.47395 * 179.97438 * 10 9 6 12 12 C 1.50705 * 109.47526 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99588 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00050 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00308 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99876 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47071 * 89.99739 * 16 14 12 18 18 H 1.48500 * 109.46876 * 209.99896 * 16 14 12 19 19 H 1.48503 * 109.46893 * 329.99707 * 16 14 12 20 20 C 1.54249 * 108.89178 * 63.92234 * 3 2 1 21 21 C 1.50552 * 108.48606 * 40.58930 * 20 3 2 22 22 C 1.54066 * 112.41442 * 94.26430 * 21 20 3 23 23 C 1.54064 * 112.81563 * 318.28179 * 22 21 20 24 24 C 1.50471 * 112.49920 * 318.28437 * 23 22 21 25 25 C 1.45536 * 108.89957 * 186.71318 * 3 2 1 26 26 H 1.08999 * 109.46965 * 306.15777 * 1 2 3 27 27 H 1.09001 * 109.46663 * 66.16080 * 1 2 3 28 28 H 1.08994 * 109.47059 * 186.15612 * 1 2 3 29 29 H 1.08995 * 109.47011 * 181.76845 * 4 3 2 30 30 H 1.08999 * 109.47189 * 61.76258 * 4 3 2 31 31 H 0.97003 * 119.99659 * 345.44412 * 5 4 3 32 32 H 1.09005 * 109.47078 * 299.99798 * 9 6 5 33 33 H 1.08994 * 109.47291 * 59.99917 * 9 6 5 34 34 H 1.09000 * 109.47504 * 299.99962 * 10 9 6 35 35 H 1.09009 * 109.47407 * 59.99548 * 10 9 6 36 36 H 1.08997 * 109.47189 * 299.99823 * 11 10 9 37 37 H 1.09001 * 109.47250 * 60.00161 * 11 10 9 38 38 H 0.97001 * 119.99760 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.62748 * 160.38856 * 20 3 2 40 40 H 1.09000 * 109.62947 * 280.96320 * 20 3 2 41 41 H 1.09000 * 108.92226 * 333.50950 * 21 20 3 42 42 H 1.08992 * 108.83764 * 214.96129 * 21 20 3 43 43 H 1.08995 * 108.81644 * 197.42132 * 22 21 20 44 44 H 1.08997 * 108.72598 * 79.08080 * 22 21 20 45 45 H 1.09009 * 108.87749 * 197.50542 * 23 22 21 46 46 H 1.09000 * 108.88075 * 79.06272 * 23 22 21 47 47 H 1.09008 * 109.62444 * 334.44289 * 24 23 22 48 48 H 1.09004 * 109.63257 * 213.87142 * 24 23 22 49 49 H 1.09000 * 108.89295 * 62.03553 * 25 3 2 50 50 H 1.08997 * 108.89657 * 180.62666 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.4470 2.0980 -1.1812 5 7 1.7384 1.3880 -2.4292 6 16 0.9466 1.8040 -3.8228 7 8 1.4521 0.9004 -4.7961 8 8 -0.4274 1.7974 -3.4606 9 6 1.5046 3.4942 -4.1730 10 6 0.8354 3.9971 -5.4536 11 6 1.3055 5.4229 -5.7487 12 6 0.6468 5.9181 -7.0105 13 1 -0.0388 5.2798 -7.5480 14 6 0.9196 7.1858 -7.4787 15 7 1.7541 7.9633 -6.8239 16 14 0.1026 7.7999 -9.0424 17 1 -1.1779 8.4703 -8.7015 18 1 1.0012 8.7660 -9.7238 19 1 -0.1650 6.6513 -9.9449 20 6 1.6275 2.0226 1.3108 21 6 1.7129 1.0307 2.4402 22 6 3.0774 1.0700 3.1546 23 6 4.2604 1.1996 2.1763 24 6 4.0962 0.3343 0.9563 25 6 3.4513 1.1797 -0.1610 26 1 -0.3633 0.6063 0.8297 27 1 -0.3633 0.4154 -0.9400 28 1 -0.3633 -1.0217 0.1102 29 1 1.9078 3.0854 -1.2089 30 1 0.3682 2.2035 -1.0666 31 1 2.3922 0.6714 -2.4381 32 1 1.2346 4.1455 -3.3417 33 1 2.5868 3.5001 -4.3025 34 1 1.1057 3.3458 -6.2848 35 1 -0.2470 3.9911 -5.3246 36 1 1.0348 6.0740 -4.9175 37 1 2.3878 5.4293 -5.8777 38 1 1.9463 8.8551 -7.1535 39 1 2.3173 2.8468 1.4922 40 1 0.6090 2.4037 1.2357 41 1 1.5514 0.0284 2.0434 42 1 0.9293 1.2534 3.1642 43 1 3.1980 0.1539 3.7327 44 1 3.0908 1.9199 3.8369 45 1 5.1772 0.9126 2.6915 46 1 4.3459 2.2398 1.8619 47 1 3.4523 -0.5130 1.1924 48 1 5.0717 -0.0242 0.6276 49 1 3.6595 0.7113 -1.1229 50 1 3.8959 2.1748 -0.1498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908358021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:19 Heat of formation + Delta-G solvation = -168.836664 kcal Electronic energy + Delta-G solvation = -28196.410261 eV Core-core repulsion = 24348.930993 eV Total energy + Delta-G solvation = -3847.479268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.48410 -38.20159 -37.19333 -37.04277 -36.47324 -35.93722 -34.16959 -33.06282 -32.27451 -29.65970 -27.80325 -27.40825 -25.66653 -25.50930 -23.73511 -22.43209 -20.95343 -20.45970 -19.97697 -18.77917 -18.57974 -17.78264 -17.57129 -17.08051 -16.70057 -16.48601 -16.35050 -16.11428 -15.86136 -15.29232 -15.09791 -14.55381 -14.47230 -14.22312 -14.01179 -13.90300 -13.72873 -13.51502 -13.30548 -13.20425 -13.11662 -13.03982 -12.94990 -12.92200 -12.76213 -12.63266 -12.56774 -12.16209 -11.91824 -11.78166 -11.75780 -11.39265 -11.38776 -11.17295 -11.16982 -11.06687 -11.02214 -10.57905 -10.53585 -10.26539 -8.23353 -6.34174 -0.74776 1.39881 1.40418 1.51835 1.77226 2.39303 2.74910 2.88734 3.10282 3.22883 3.52101 3.71586 3.74855 3.85355 3.93728 4.16426 4.19724 4.25512 4.36525 4.38488 4.42577 4.48622 4.52882 4.60639 4.61347 4.64496 4.70365 4.78186 4.87051 4.95308 5.00119 5.02914 5.05551 5.07879 5.17438 5.27719 5.36537 5.39581 5.41643 5.44842 5.45925 5.57649 5.62574 5.70814 5.78947 6.06564 6.19301 6.32620 6.81365 7.35191 8.88089 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.002507 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.612820 B =11164.023425 C =11782.957361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.377 6.377 3 C 0.125 3.875 4 C 0.071 3.929 5 N -1.103 6.103 6 S 2.629 3.371 7 O -0.994 6.994 8 O -0.989 6.989 9 C -0.608 4.608 10 C -0.107 4.107 11 C 0.032 3.968 12 C -0.553 4.553 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.110 4.110 25 C -0.118 4.118 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.424 0.576 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.005 0.995 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -14.714 22.547 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.296 6.296 3 C 0.084 3.916 4 C -0.056 4.056 5 N -0.866 5.866 6 S 2.724 3.276 7 O -0.985 6.985 8 O -0.979 6.979 9 C -0.739 4.739 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.591 4.591 13 H 0.077 0.923 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.786 3.214 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.178 4.178 21 C -0.161 4.161 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.148 4.148 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.262 0.738 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.023 0.977 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.141 -15.156 22.085 26.969 hybrid contribution 0.066 1.049 -0.780 1.309 sum 3.207 -14.108 21.305 25.753 Atomic orbital electron populations 1.22897 0.81311 1.03320 1.00618 1.87989 1.19814 1.27389 1.94395 1.20455 0.94531 0.83544 0.93062 1.22380 1.02211 0.97029 0.83962 1.55247 1.59923 1.49148 1.22289 1.04240 0.73833 0.76767 0.72759 1.93533 1.81302 1.62346 1.61285 1.93521 1.34247 1.87421 1.82705 1.30489 1.12933 1.22775 1.07680 1.21314 0.99782 0.99573 0.93957 1.18955 0.95560 0.90698 0.95442 1.21742 1.26934 1.00091 1.10324 0.92269 1.25918 0.95727 0.97067 1.00778 1.70065 1.36233 1.09378 1.41233 0.85496 0.78433 0.78300 0.79148 1.19662 1.20509 1.19002 1.21913 1.02804 0.99317 0.93719 1.21301 0.97285 1.00726 0.96804 1.21876 0.93893 1.01584 0.97741 1.21367 0.97932 1.00289 0.96082 1.21188 1.00393 0.98603 0.94582 1.20628 0.92416 1.02296 1.00207 0.92357 0.94578 0.89187 0.88376 0.90079 0.73793 0.83468 0.83487 0.91772 0.91548 0.97696 0.97854 0.92612 0.89301 0.90935 0.90888 0.92092 0.92568 0.92131 0.92086 0.91744 0.91606 0.91622 0.91365 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.55 113.37 1.08 1.33 16 2 O -0.38 -6.63 7.50 -148.98 -1.12 -7.75 16 3 C 0.12 1.82 0.35 -12.65 0.00 1.81 16 4 C 0.07 1.17 4.28 86.38 0.37 1.54 16 5 N -1.10 -22.14 5.53 -187.48 -1.04 -23.17 16 6 S 2.63 74.01 5.46 -56.49 -0.31 73.70 16 7 O -0.99 -34.66 18.08 -127.65 -2.31 -36.97 16 8 O -0.99 -33.29 17.49 -127.65 -2.23 -35.52 16 9 C -0.61 -17.62 6.08 71.98 0.44 -17.18 16 10 C -0.11 -4.31 5.16 30.59 0.16 -4.15 16 11 C 0.03 1.62 4.97 29.85 0.15 1.77 16 12 C -0.55 -31.36 9.11 25.60 0.23 -31.12 16 13 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 14 C 0.00 0.19 5.46 84.65 0.46 0.66 16 15 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 16 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C -0.14 -1.67 4.06 30.22 0.12 -1.55 16 21 C -0.12 -1.49 4.68 30.16 0.14 -1.35 16 22 C -0.11 -1.24 5.85 31.31 0.18 -1.06 16 23 C -0.12 -1.30 5.31 30.14 0.16 -1.14 16 24 C -0.11 -1.40 5.57 30.20 0.17 -1.23 16 25 C -0.12 -1.55 4.08 28.73 0.12 -1.44 16 26 H 0.06 0.81 6.27 -2.39 -0.01 0.79 16 27 H 0.04 0.74 6.70 -2.39 -0.02 0.73 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.45 6.14 -2.39 -0.01 1.44 16 31 H 0.42 7.64 6.93 -96.74 -0.67 6.97 16 32 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 36 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.09 0.91 6.97 -2.39 -0.02 0.90 16 40 H 0.07 0.84 7.26 -2.39 -0.02 0.82 16 41 H 0.07 1.06 5.12 -2.39 -0.01 1.05 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.06 0.66 6.62 -2.39 -0.02 0.64 16 47 H 0.07 1.00 6.24 -2.38 -0.01 0.99 16 48 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.07 0.94 6.27 -2.39 -0.01 0.93 16 50 H 0.09 1.00 7.46 -2.39 -0.02 0.98 16 Total: -1.00 -73.19 386.57 -0.66 -73.85 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.25 Total: 17.97 kcal Atomic # 6 Polarization: -56.88 SS G_CDS: 3.78 Total: -53.10 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -0.75 Total: -78.24 kcal Atomic # 8 Polarization: -74.58 SS G_CDS: -5.66 Total: -80.24 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 74.01 SS G_CDS: -0.31 Total: 73.70 kcal Total: -73.19 -0.66 -73.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908358021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.988 kcal (2) G-P(sol) polarization free energy of solvation -73.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds