Wall clock time and date at job start Tue Mar 31 2020 17:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99780 * 2 1 4 4 H 1.08998 * 110.19933 * 331.87005 * 3 2 1 5 5 C 1.54159 * 110.22310 * 210.00469 * 3 2 1 6 6 C 1.54184 * 104.23784 * 223.77352 * 5 3 2 7 7 H 1.09002 * 109.71734 * 271.58605 * 6 5 3 8 8 C 1.51018 * 110.37994 * 150.55205 * 6 5 3 9 9 N 1.46171 * 113.41686 * 176.23933 * 8 6 5 10 10 C 1.46900 * 111.00214 * 302.50046 * 9 8 6 11 11 C 1.53000 * 109.47146 * 284.88785 * 10 9 8 12 12 H 1.09001 * 109.47612 * 57.23775 * 11 10 9 13 13 O 1.42904 * 109.46557 * 297.24128 * 11 10 9 14 14 C 1.50695 * 109.47602 * 177.24359 * 11 10 9 15 15 H 1.08008 * 119.99303 * 359.97438 * 14 11 10 16 16 C 1.37870 * 120.00533 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99823 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00347 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47023 * 120.00253 * 18 16 14 21 21 H 1.48494 * 109.47395 * 240.00039 * 18 16 14 22 22 C 1.46910 * 112.17238 * 67.31636 * 9 8 6 23 23 C 1.51225 * 108.81501 * 275.69913 * 22 9 8 24 24 C 1.38075 * 120.29568 * 249.64866 * 23 22 9 25 25 C 1.39002 * 118.14306 * 180.30630 * 24 23 22 26 26 C 1.38068 * 119.23926 * 359.97438 * 25 24 23 27 27 N 1.31959 * 121.07284 * 359.90018 * 26 25 24 28 28 C 1.32570 * 121.44567 * 359.95485 * 27 26 25 29 29 N 1.39052 * 120.38591 * 180.69322 * 28 27 26 30 30 C 1.47342 * 110.97236 * 350.18950 * 29 28 27 31 31 H 1.09000 * 109.47336 * 59.99704 * 1 2 3 32 32 H 1.09001 * 109.46691 * 299.99742 * 1 2 3 33 33 H 1.08993 * 109.46996 * 180.02562 * 1 2 3 34 34 H 1.09006 * 110.47679 * 342.45867 * 5 3 2 35 35 H 1.08997 * 110.48291 * 104.95187 * 5 3 2 36 36 H 1.08999 * 108.69604 * 297.25777 * 8 6 5 37 37 H 1.09003 * 108.69745 * 55.35801 * 8 6 5 38 38 H 1.09003 * 109.46969 * 44.88194 * 10 9 8 39 39 H 1.08993 * 109.47422 * 164.88479 * 10 9 8 40 40 H 0.96693 * 114.00445 * 304.67654 * 13 11 10 41 41 H 0.97001 * 120.00194 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.58054 * 35.49499 * 22 9 8 43 43 H 1.09001 * 109.58070 * 155.76512 * 22 9 8 44 44 H 1.08002 * 120.93049 * 0.31471 * 24 23 22 45 45 H 1.07998 * 120.37770 * 180.02562 * 25 24 23 46 46 H 1.07992 * 119.45933 * 179.88139 * 26 25 24 47 47 H 1.09004 * 109.85348 * 22.08429 * 30 29 28 48 48 H 1.08992 * 109.85603 * 261.01673 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3391 2.0162 -0.4823 5 6 3.3713 1.2828 -0.7234 6 6 4.2952 2.1235 0.1806 7 1 4.2324 3.1736 -0.1046 8 6 5.7234 1.6474 0.0607 9 7 6.6713 2.4559 0.8250 10 6 6.6128 3.8650 0.4139 11 6 7.3095 4.0312 -0.9381 12 1 6.8390 3.3771 -1.6723 13 8 8.6900 3.6858 -0.8081 14 6 7.1906 5.4633 -1.3920 15 1 6.6697 6.1829 -0.7776 16 6 7.7466 5.8549 -2.5913 17 7 8.3804 4.9784 -3.3395 18 14 7.5986 7.6299 -3.1541 19 1 6.8438 8.4093 -2.1402 20 1 8.9549 8.2124 -3.3166 21 1 6.8800 7.6791 -4.4527 22 6 6.4721 2.3217 2.2743 23 6 5.3858 3.2801 2.7082 24 6 5.6967 4.3829 3.4785 25 6 4.6624 5.2307 3.8575 26 6 3.3734 4.9441 3.4542 27 7 3.1110 3.8824 2.7158 28 6 4.0708 3.0523 2.3323 29 7 3.7714 1.9478 1.5423 30 6 2.3147 1.7530 1.4385 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.7433 0.2614 -0.8041 35 1 3.2859 1.7358 -1.7111 36 1 5.7791 0.6174 0.4130 37 1 6.0131 1.6726 -0.9898 38 1 5.5714 4.1750 0.3264 39 1 7.1142 4.4822 1.1593 40 1 9.1559 4.1796 -0.1195 41 1 8.7713 5.2538 -4.1835 42 1 6.1730 1.3001 2.5089 43 1 7.4004 2.5591 2.7942 44 1 6.7151 4.5814 3.7782 45 1 4.8649 6.1040 4.4597 46 1 2.5668 5.5993 3.7482 47 1 1.7997 2.6896 1.6524 48 1 1.9932 0.9833 2.1400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931470284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:35 Heat of formation + Delta-G solvation = -20.299428 kcal Electronic energy + Delta-G solvation = -30702.837010 eV Core-core repulsion = 26758.647600 eV Total energy + Delta-G solvation = -3944.189410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42042 -39.03311 -37.84457 -36.60265 -34.97747 -32.71346 -32.34364 -32.07310 -29.80146 -29.32465 -28.36756 -26.61922 -25.95346 -25.22460 -23.59075 -23.05854 -21.64476 -20.85450 -20.70338 -19.35665 -17.81783 -16.98392 -16.79712 -16.45642 -15.72257 -15.61841 -15.22740 -15.05771 -14.65278 -14.53245 -14.49549 -14.07183 -13.96583 -13.68848 -13.53341 -13.21597 -12.88933 -12.66728 -12.48796 -12.37728 -12.00697 -11.88647 -11.74846 -11.68086 -11.12362 -11.05761 -11.00754 -10.94081 -10.77141 -10.68224 -10.49287 -10.05709 -9.90463 -9.74754 -9.66150 -9.23975 -9.03774 -8.56254 -8.12083 -8.06543 -7.64696 -5.99933 -4.18209 1.15557 1.32991 3.25200 3.33759 3.36565 3.47157 3.60482 3.87972 4.27476 4.38196 4.46597 4.64771 4.69257 4.86103 4.94736 5.03579 5.05332 5.12535 5.14553 5.18514 5.27542 5.28395 5.39906 5.49334 5.51538 5.62613 5.64949 5.73275 5.79391 5.85645 5.93515 5.98642 6.02101 6.10529 6.13007 6.26619 6.33323 6.37580 6.54651 6.63008 6.69147 6.79546 7.07592 7.21908 7.50926 7.55145 7.77701 7.88568 7.98355 8.21927 8.85001 9.46680 9.63499 11.04159 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.004356 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.451851 B = 6426.952245 C = 7417.525377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.079 3.921 4 H 0.070 0.930 5 C -0.115 4.115 6 C 0.046 3.954 7 H 0.067 0.933 8 C 0.067 3.933 9 N -0.512 5.512 10 C 0.030 3.970 11 C 0.241 3.759 12 H 0.053 0.947 13 O -0.552 6.552 14 C -0.573 4.573 15 H 0.051 0.949 16 C 0.082 3.918 17 N -0.857 5.857 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.102 3.898 23 C -0.159 4.159 24 C -0.049 4.049 25 C -0.192 4.192 26 C 0.112 3.888 27 N -0.520 5.520 28 C 0.305 3.695 29 N -0.456 5.456 30 C 0.017 3.983 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.060 0.940 40 H 0.340 0.660 41 H 0.259 0.741 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.151 0.849 47 H 0.089 0.911 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 -5.590 11.939 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.021 3.979 4 H 0.088 0.912 5 C -0.154 4.154 6 C -0.061 4.061 7 H 0.085 0.915 8 C -0.062 4.062 9 N -0.231 5.231 10 C -0.097 4.097 11 C 0.183 3.817 12 H 0.071 0.929 13 O -0.354 6.354 14 C -0.612 4.612 15 H 0.070 0.930 16 C -0.124 4.124 17 N -0.492 5.492 18 Si 0.712 3.288 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.026 4.026 23 C -0.165 4.165 24 C -0.076 4.076 25 C -0.213 4.213 26 C -0.046 4.046 27 N -0.233 5.233 28 C 0.074 3.926 29 N -0.176 5.176 30 C -0.110 4.110 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.182 0.818 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.169 0.831 47 H 0.107 0.893 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.527 -7.059 11.088 18.158 hybrid contribution -0.701 2.988 0.375 3.092 sum -13.228 -4.071 11.463 17.971 Atomic orbital electron populations 1.22794 0.81349 1.02638 0.99946 1.87980 1.19404 1.27222 1.94869 1.22892 0.95315 0.84761 0.94960 0.91174 1.22440 0.92463 1.02145 0.98304 1.22588 0.98067 1.00490 0.85001 0.91469 1.21726 0.86288 0.97661 1.00544 1.62201 1.47831 1.10998 1.02110 1.23156 0.99281 0.85965 1.01271 1.19281 0.79738 0.94364 0.88346 0.92938 1.86600 1.24032 1.65729 1.59025 1.21663 1.38119 0.95733 1.05641 0.93030 1.24985 0.94236 0.96950 0.96213 1.70089 1.33823 1.33434 1.11881 0.86689 0.77919 0.85530 0.78672 1.19850 1.20794 1.20897 1.21340 0.94259 0.97526 0.89523 1.21159 0.95609 0.99278 1.00417 1.21423 0.99742 0.92382 0.94069 1.22032 0.93978 1.01531 1.03780 1.22420 0.95929 0.93069 0.93155 1.67502 1.36644 1.04511 1.14644 1.19618 0.89389 0.88510 0.95079 1.60886 1.13075 1.31900 1.11708 1.23254 0.87546 1.02965 0.97271 0.94040 0.94094 0.89685 0.88872 0.89513 0.90427 0.89063 0.95349 0.92131 0.81763 0.93075 0.89718 0.90090 0.84537 0.84963 0.83129 0.89291 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.38 -4.66 10.25 -35.23 -0.36 -5.02 16 3 C 0.08 0.99 3.48 -25.77 -0.09 0.90 16 4 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 5 C -0.11 -1.53 6.24 -25.51 -0.16 -1.69 16 6 C 0.05 0.72 2.23 -68.06 -0.15 0.57 16 7 H 0.07 1.23 5.87 -51.93 -0.30 0.92 16 8 C 0.07 1.11 4.54 -5.22 -0.02 1.08 16 9 N -0.51 -9.02 4.71 -237.61 -1.12 -10.14 16 10 C 0.03 0.61 3.29 -3.82 -0.01 0.60 16 11 C 0.24 5.99 2.89 -27.89 -0.08 5.91 16 12 H 0.05 1.44 6.85 -51.93 -0.36 1.08 16 13 O -0.55 -14.20 12.65 -35.23 -0.45 -14.65 16 14 C -0.57 -15.63 8.79 -34.45 -0.30 -15.93 16 15 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 16 C 0.08 2.30 5.40 -17.82 -0.10 2.20 16 17 N -0.86 -25.21 12.84 55.43 0.71 -24.50 16 18 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 C 0.10 1.53 5.63 -4.71 -0.03 1.51 16 23 C -0.16 -2.39 3.59 -104.27 -0.37 -2.76 16 24 C -0.05 -0.65 9.27 -39.36 -0.36 -1.02 16 25 C -0.19 -2.33 10.12 -39.36 -0.40 -2.72 16 26 C 0.11 1.44 11.16 -17.56 -0.20 1.25 16 27 N -0.52 -7.91 8.17 -12.50 -0.10 -8.01 16 28 C 0.31 4.81 5.63 -155.01 -0.87 3.94 16 29 N -0.46 -6.89 4.58 -165.35 -0.76 -7.65 16 30 C 0.02 0.23 6.41 -3.22 -0.02 0.21 16 31 H 0.04 0.33 8.10 -51.93 -0.42 -0.09 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.22 7.85 -51.93 -0.41 0.82 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.19 7.92 -51.93 -0.41 0.78 16 37 H 0.09 1.65 6.85 -51.93 -0.36 1.29 16 38 H 0.03 0.61 5.12 -51.93 -0.27 0.34 16 39 H 0.06 1.21 7.27 -51.93 -0.38 0.83 16 40 H 0.34 7.77 9.02 45.56 0.41 8.19 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.08 1.23 7.71 -51.93 -0.40 0.83 16 43 H 0.08 1.12 7.97 -51.93 -0.41 0.70 16 44 H 0.14 1.54 8.03 -52.49 -0.42 1.12 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.09 1.26 6.23 -51.93 -0.32 0.94 16 48 H 0.09 1.16 7.95 -51.93 -0.41 0.75 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -32.01 370.70 -10.10 -42.11 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.52 Total: 10.77 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.07 Total: -4.61 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -1.27 Total: -50.30 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.81 Total: -19.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.01 -10.10 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931470284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.812 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds