Wall clock time and date at job start Tue Mar 31 2020 17:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99780 * 2 1 4 4 H 1.08998 * 110.19933 * 331.87005 * 3 2 1 5 5 C 1.54159 * 110.22310 * 210.00469 * 3 2 1 6 6 C 1.54184 * 104.23784 * 223.77352 * 5 3 2 7 7 H 1.09002 * 109.71734 * 271.58605 * 6 5 3 8 8 C 1.51018 * 110.37994 * 150.55205 * 6 5 3 9 9 N 1.46171 * 113.41686 * 176.23933 * 8 6 5 10 10 C 1.46900 * 111.00214 * 302.50046 * 9 8 6 11 11 C 1.53000 * 109.47146 * 284.88785 * 10 9 8 12 12 H 1.09001 * 109.47612 * 57.23775 * 11 10 9 13 13 O 1.42904 * 109.46557 * 297.24128 * 11 10 9 14 14 C 1.50695 * 109.47602 * 177.24359 * 11 10 9 15 15 H 1.08008 * 119.99303 * 359.97438 * 14 11 10 16 16 C 1.37870 * 120.00533 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99823 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00347 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47023 * 120.00253 * 18 16 14 21 21 H 1.48494 * 109.47395 * 240.00039 * 18 16 14 22 22 C 1.46910 * 112.17238 * 67.31636 * 9 8 6 23 23 C 1.51225 * 108.81501 * 275.69913 * 22 9 8 24 24 C 1.38075 * 120.29568 * 249.64866 * 23 22 9 25 25 C 1.39002 * 118.14306 * 180.30630 * 24 23 22 26 26 C 1.38068 * 119.23926 * 359.97438 * 25 24 23 27 27 N 1.31959 * 121.07284 * 359.90018 * 26 25 24 28 28 C 1.32570 * 121.44567 * 359.95485 * 27 26 25 29 29 N 1.39052 * 120.38591 * 180.69322 * 28 27 26 30 30 C 1.47342 * 110.97236 * 350.18950 * 29 28 27 31 31 H 1.09000 * 109.47336 * 59.99704 * 1 2 3 32 32 H 1.09001 * 109.46691 * 299.99742 * 1 2 3 33 33 H 1.08993 * 109.46996 * 180.02562 * 1 2 3 34 34 H 1.09006 * 110.47679 * 342.45867 * 5 3 2 35 35 H 1.08997 * 110.48291 * 104.95187 * 5 3 2 36 36 H 1.08999 * 108.69604 * 297.25777 * 8 6 5 37 37 H 1.09003 * 108.69745 * 55.35801 * 8 6 5 38 38 H 1.09003 * 109.46969 * 44.88194 * 10 9 8 39 39 H 1.08993 * 109.47422 * 164.88479 * 10 9 8 40 40 H 0.96693 * 114.00445 * 304.67654 * 13 11 10 41 41 H 0.97001 * 120.00194 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.58054 * 35.49499 * 22 9 8 43 43 H 1.09001 * 109.58070 * 155.76512 * 22 9 8 44 44 H 1.08002 * 120.93049 * 0.31471 * 24 23 22 45 45 H 1.07998 * 120.37770 * 180.02562 * 25 24 23 46 46 H 1.07992 * 119.45933 * 179.88139 * 26 25 24 47 47 H 1.09004 * 109.85348 * 22.08429 * 30 29 28 48 48 H 1.08992 * 109.85603 * 261.01673 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3391 2.0162 -0.4823 5 6 3.3713 1.2828 -0.7234 6 6 4.2952 2.1235 0.1806 7 1 4.2324 3.1736 -0.1046 8 6 5.7234 1.6474 0.0607 9 7 6.6713 2.4559 0.8250 10 6 6.6128 3.8650 0.4139 11 6 7.3095 4.0312 -0.9381 12 1 6.8390 3.3771 -1.6723 13 8 8.6900 3.6858 -0.8081 14 6 7.1906 5.4633 -1.3920 15 1 6.6697 6.1829 -0.7776 16 6 7.7466 5.8549 -2.5913 17 7 8.3804 4.9784 -3.3395 18 14 7.5986 7.6299 -3.1541 19 1 6.8438 8.4093 -2.1402 20 1 8.9549 8.2124 -3.3166 21 1 6.8800 7.6791 -4.4527 22 6 6.4721 2.3217 2.2743 23 6 5.3858 3.2801 2.7082 24 6 5.6967 4.3829 3.4785 25 6 4.6624 5.2307 3.8575 26 6 3.3734 4.9441 3.4542 27 7 3.1110 3.8824 2.7158 28 6 4.0708 3.0523 2.3323 29 7 3.7714 1.9478 1.5423 30 6 2.3147 1.7530 1.4385 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.7433 0.2614 -0.8041 35 1 3.2859 1.7358 -1.7111 36 1 5.7791 0.6174 0.4130 37 1 6.0131 1.6726 -0.9898 38 1 5.5714 4.1750 0.3264 39 1 7.1142 4.4822 1.1593 40 1 9.1559 4.1796 -0.1195 41 1 8.7713 5.2538 -4.1835 42 1 6.1730 1.3001 2.5089 43 1 7.4004 2.5591 2.7942 44 1 6.7151 4.5814 3.7782 45 1 4.8649 6.1040 4.4597 46 1 2.5668 5.5993 3.7482 47 1 1.7997 2.6896 1.6524 48 1 1.9932 0.9833 2.1400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931470284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:34 Heat of formation + Delta-G solvation = -44.894005 kcal Electronic energy + Delta-G solvation = -30703.903511 eV Core-core repulsion = 26758.647600 eV Total energy + Delta-G solvation = -3945.255911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.55963 -40.05337 -39.15947 -37.81484 -36.72462 -34.22315 -33.80580 -33.45337 -31.09593 -30.58536 -29.86054 -27.44995 -27.29605 -26.82683 -24.81090 -24.23636 -23.24252 -22.01232 -21.82759 -20.80162 -19.14148 -18.76813 -17.85353 -17.55959 -16.97403 -16.69240 -16.65872 -16.46800 -16.22322 -15.89436 -15.67712 -15.38690 -15.16133 -15.12155 -15.04438 -14.41130 -14.18527 -13.93029 -13.81853 -13.48600 -13.27225 -13.10759 -12.88977 -12.82415 -12.80227 -12.77018 -12.57446 -12.39074 -12.23963 -12.09150 -11.94521 -11.74921 -11.07401 -10.99171 -10.73837 -10.66789 -10.63786 -10.32289 -10.09440 -9.19399 -9.10427 -8.12528 -6.38289 0.10216 0.29125 1.37219 1.38913 1.50118 2.36295 2.39815 2.69263 2.81452 3.08524 3.13874 3.39464 3.43076 3.61674 3.76903 3.91197 3.96024 3.97205 4.09156 4.14604 4.20052 4.34513 4.36194 4.40222 4.45901 4.53451 4.56116 4.57268 4.62785 4.71376 4.74811 4.78552 4.85250 4.89771 4.90084 4.93070 5.00611 5.05961 5.14832 5.26692 5.53234 5.57605 5.60433 5.75219 5.99852 6.10320 6.19809 6.20916 6.26114 6.74307 6.93029 7.35911 7.66058 8.91960 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.004356 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.451851 B = 6426.952245 C = 7417.525377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.087 3.913 4 H 0.081 0.919 5 C -0.114 4.114 6 C 0.058 3.942 7 H 0.035 0.965 8 C 0.071 3.929 9 N -0.522 5.522 10 C 0.061 3.939 11 C 0.243 3.757 12 H 0.018 0.982 13 O -0.568 6.568 14 C -0.586 4.586 15 H 0.051 0.949 16 C 0.031 3.969 17 N -0.896 5.896 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.279 1.279 22 C 0.107 3.893 23 C -0.176 4.176 24 C -0.056 4.056 25 C -0.185 4.185 26 C 0.103 3.897 27 N -0.537 5.537 28 C 0.282 3.718 29 N -0.459 5.459 30 C 0.022 3.978 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.015 0.985 39 H 0.065 0.935 40 H 0.351 0.649 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.157 0.843 45 H 0.166 0.834 46 H 0.181 0.819 47 H 0.083 0.917 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 -4.433 13.444 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C 0.029 3.971 4 H 0.099 0.901 5 C -0.152 4.152 6 C -0.050 4.050 7 H 0.053 0.947 8 C -0.058 4.058 9 N -0.242 5.242 10 C -0.066 4.066 11 C 0.185 3.815 12 H 0.036 0.964 13 O -0.371 6.371 14 C -0.624 4.624 15 H 0.069 0.931 16 C -0.171 4.171 17 N -0.533 5.533 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.205 1.205 22 C -0.021 4.021 23 C -0.182 4.182 24 C -0.083 4.083 25 C -0.206 4.206 26 C -0.055 4.055 27 N -0.251 5.251 28 C 0.052 3.948 29 N -0.179 5.179 30 C -0.105 4.105 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.033 0.967 39 H 0.084 0.916 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.175 0.825 45 H 0.184 0.816 46 H 0.198 0.802 47 H 0.101 0.899 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.456 -5.907 12.619 19.370 hybrid contribution -0.451 2.617 -0.015 2.656 sum -13.907 -3.290 12.603 19.054 Atomic orbital electron populations 1.23013 0.79493 1.04043 1.00782 1.87949 1.21463 1.26878 1.94907 1.22771 0.94943 0.85322 0.94094 0.90094 1.22425 0.92861 1.01786 0.98149 1.22336 0.97856 0.98728 0.86121 0.94689 1.21635 0.86892 0.98164 0.99102 1.62090 1.48730 1.09309 1.04055 1.22590 0.97661 0.87778 0.98606 1.19093 0.79686 0.92565 0.90121 0.96400 1.86542 1.24641 1.66100 1.59854 1.22005 1.37714 0.96813 1.05870 0.93108 1.25800 0.93828 1.01209 0.96298 1.70220 1.35036 1.35646 1.12399 0.85616 0.78066 0.80298 0.78236 1.19044 1.20222 1.20487 1.21336 0.95204 0.98029 0.87512 1.21214 0.95232 1.00156 1.01625 1.21780 1.01236 0.91823 0.93463 1.22426 0.93202 1.01962 1.02976 1.23042 0.97473 0.92647 0.92321 1.67519 1.36848 1.05294 1.15433 1.19793 0.90018 0.89171 0.95835 1.60882 1.13849 1.32192 1.10980 1.23220 0.86733 1.02589 0.97949 0.93051 0.93391 0.88069 0.88665 0.89273 0.89180 0.91470 0.96653 0.91638 0.80457 0.92999 0.89409 0.88644 0.82529 0.81615 0.80195 0.89870 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.85 113.37 1.23 1.60 16 2 O -0.39 -9.35 10.25 -148.98 -1.53 -10.88 16 3 C 0.09 2.15 3.48 31.22 0.11 2.26 16 4 H 0.08 1.79 7.81 -2.39 -0.02 1.78 16 5 C -0.11 -3.09 6.24 31.39 0.20 -2.90 16 6 C 0.06 1.85 2.23 44.66 0.10 1.95 16 7 H 0.04 1.34 5.87 -2.39 -0.01 1.33 16 8 C 0.07 2.43 4.54 85.80 0.39 2.82 16 9 N -0.52 -18.62 4.71 -905.66 -4.27 -22.89 16 10 C 0.06 2.52 3.29 86.30 0.28 2.80 16 11 C 0.24 12.45 2.89 29.85 0.09 12.54 16 12 H 0.02 1.05 6.85 -2.39 -0.02 1.03 16 13 O -0.57 -29.79 12.65 -148.98 -1.88 -31.68 16 14 C -0.59 -32.32 8.79 25.60 0.22 -32.10 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 16 C 0.03 1.76 5.40 84.65 0.46 2.21 16 17 N -0.90 -53.67 12.84 21.45 0.28 -53.39 16 18 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C 0.11 3.14 5.63 85.72 0.48 3.62 16 23 C -0.18 -5.15 3.59 -19.64 -0.07 -5.22 16 24 C -0.06 -1.38 9.27 22.41 0.21 -1.17 16 25 C -0.19 -3.94 10.12 22.41 0.23 -3.72 16 26 C 0.10 2.42 11.16 84.63 0.94 3.37 16 27 N -0.54 -15.84 8.17 -193.48 -1.58 -17.42 16 28 C 0.28 8.79 5.63 132.88 0.75 9.54 16 29 N -0.46 -13.93 4.58 -677.03 -3.10 -17.03 16 30 C 0.02 0.60 6.41 86.45 0.55 1.16 16 31 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 2.54 7.85 -2.38 -0.02 2.52 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.09 2.81 7.92 -2.39 -0.02 2.79 16 37 H 0.07 2.59 6.85 -2.39 -0.02 2.58 16 38 H 0.02 0.67 5.12 -2.39 -0.01 0.66 16 39 H 0.07 2.59 7.27 -2.39 -0.02 2.57 16 40 H 0.35 16.18 9.02 -74.06 -0.67 15.51 16 41 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.09 2.50 7.71 -2.39 -0.02 2.48 16 43 H 0.10 2.49 7.97 -2.39 -0.02 2.47 16 44 H 0.16 3.08 8.03 -2.91 -0.02 3.06 16 45 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 46 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.08 2.34 6.23 -2.39 -0.01 2.32 16 48 H 0.08 2.27 7.95 -2.39 -0.02 2.25 16 Total: -1.00 -69.49 370.70 -3.58 -73.08 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.31 Total: 36.04 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 6.17 Total: -1.23 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -8.68 Total: -110.74 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -3.41 Total: -42.56 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.49 -3.58 -73.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931470284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.181 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds