Wall clock time and date at job start Tue Mar 31 2020 17:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00183 * 2 1 4 4 H 1.09001 * 110.19113 * 28.12939 * 3 2 1 5 5 C 1.54156 * 110.22644 * 150.00204 * 3 2 1 6 6 C 1.54187 * 104.23868 * 136.23139 * 5 3 2 7 7 H 1.09000 * 109.59811 * 88.34327 * 6 5 3 8 8 C 1.51022 * 110.36025 * 209.28827 * 6 5 3 9 9 N 1.46167 * 113.41885 * 183.78323 * 8 6 5 10 10 C 1.46894 * 111.00214 * 167.90135 * 9 8 6 11 11 C 1.53004 * 109.47232 * 75.70853 * 10 9 8 12 12 H 1.09003 * 109.47087 * 54.51852 * 11 10 9 13 13 O 1.42902 * 109.47077 * 294.52301 * 11 10 9 14 14 C 1.50699 * 109.47427 * 174.51818 * 11 10 9 15 15 H 1.08004 * 119.99436 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00337 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99780 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00217 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47089 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47354 * 120.00346 * 18 16 14 21 21 H 1.48498 * 109.47249 * 240.00272 * 18 16 14 22 22 C 1.46915 * 112.15428 * 292.70944 * 9 8 6 23 23 C 1.51207 * 108.81320 * 84.27891 * 22 9 8 24 24 C 1.38090 * 120.27787 * 110.53178 * 23 22 9 25 25 C 1.38983 * 118.15039 * 179.44092 * 24 23 22 26 26 C 1.38066 * 119.23938 * 0.02562 * 25 24 23 27 27 N 1.31963 * 121.07645 * 0.07958 * 26 25 24 28 28 C 1.32569 * 121.43584 * 0.05516 * 27 26 25 29 29 N 1.38920 * 120.28348 * 179.36574 * 28 27 26 30 30 C 1.47334 * 111.04408 * 9.56101 * 29 28 27 31 31 H 1.09005 * 109.46666 * 299.99777 * 1 2 3 32 32 H 1.09000 * 109.47067 * 59.99920 * 1 2 3 33 33 H 1.08996 * 109.47361 * 180.02562 * 1 2 3 34 34 H 1.09005 * 110.47386 * 17.54346 * 5 3 2 35 35 H 1.08995 * 110.59221 * 254.98046 * 5 3 2 36 36 H 1.08999 * 108.69547 * 304.79463 * 8 6 5 37 37 H 1.09000 * 108.69546 * 62.89403 * 8 6 5 38 38 H 1.09001 * 109.47158 * 195.70495 * 10 9 8 39 39 H 1.08998 * 109.46998 * 315.71061 * 10 9 8 40 40 H 0.96703 * 113.99655 * 299.99855 * 13 11 10 41 41 H 0.96996 * 120.00236 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.57984 * 324.47480 * 22 9 8 43 43 H 1.09004 * 109.57431 * 204.07460 * 22 9 8 44 44 H 1.08007 * 120.92174 * 359.46944 * 24 23 22 45 45 H 1.08004 * 120.38227 * 180.02562 * 25 24 23 46 46 H 1.08005 * 119.46160 * 180.11206 * 26 25 24 47 47 H 1.09004 * 109.85854 * 337.75178 * 30 29 28 48 48 H 1.08996 * 109.86283 * 98.82044 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3391 2.0161 0.4823 5 6 3.3715 1.2827 0.7232 6 6 4.2952 2.1235 -0.1808 7 1 4.2300 3.1732 0.1053 8 6 5.7239 1.6496 -0.0578 9 7 6.6721 2.4585 -0.8214 10 6 8.0564 2.1412 -0.4463 11 6 8.4612 0.8052 -1.0726 12 1 8.2932 0.8428 -2.1489 13 8 7.6756 -0.2446 -0.5043 14 6 9.9203 0.5444 -0.8007 15 1 10.5008 1.2599 -0.2372 16 6 10.5139 -0.6079 -1.2704 17 7 9.8068 -1.4794 -1.9562 18 14 12.3224 -0.9314 -0.9328 19 1 12.8881 0.1938 -0.1459 20 1 12.4643 -2.1936 -0.1633 21 1 13.0525 -1.0520 -2.2203 22 6 6.4749 2.3223 -2.2709 23 6 5.3877 3.2784 -2.7070 24 6 5.6978 4.3789 -3.4814 25 6 4.6625 5.2221 -3.8671 26 6 3.3731 4.9337 -3.4665 27 7 3.1112 3.8743 -2.7245 28 6 4.0722 3.0485 -2.3347 29 7 3.7713 1.9474 -1.5428 30 6 2.3146 1.7526 -1.4392 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.7434 0.2613 0.8038 35 1 3.2885 1.7364 1.7108 36 1 6.0110 1.6744 0.9934 37 1 5.7821 0.6200 -0.4109 38 1 8.7198 2.9273 -0.8070 39 1 8.1319 2.0715 0.6388 40 1 7.7755 -0.3364 0.4532 41 1 10.2245 -2.2899 -2.2870 42 1 6.1778 1.3000 -2.5047 43 1 7.4028 2.5629 -2.7899 44 1 6.7166 4.5785 -3.7795 45 1 4.8642 6.0929 -4.4733 46 1 2.5655 5.5854 -3.7657 47 1 1.7996 2.6892 -1.6530 48 1 1.9930 0.9830 -2.1408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931470286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:41 Heat of formation + Delta-G solvation = -23.200846 kcal Electronic energy + Delta-G solvation = -30312.889645 eV Core-core repulsion = 26368.574420 eV Total energy + Delta-G solvation = -3944.315225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11511 -38.96828 -37.90775 -36.74121 -34.68118 -32.64675 -32.42859 -32.09818 -30.25836 -29.26359 -27.89240 -26.58454 -26.09006 -25.03259 -23.42924 -22.79954 -21.67517 -20.90820 -20.26870 -19.64935 -17.78106 -17.04254 -16.76355 -16.45572 -15.75708 -15.37062 -15.02489 -14.97921 -14.70206 -14.54708 -14.35815 -14.13115 -13.94170 -13.52207 -13.33735 -13.23931 -13.00199 -12.67376 -12.48635 -12.13201 -11.90187 -11.85651 -11.71525 -11.55094 -11.12534 -11.04193 -10.97128 -10.83432 -10.76123 -10.66878 -10.39672 -10.00775 -9.82283 -9.69402 -9.44024 -9.40210 -9.16074 -8.59191 -8.58397 -7.95734 -7.21706 -6.01547 -4.21321 1.26091 1.42965 3.25087 3.33963 3.36741 3.55740 3.65807 3.92517 4.35596 4.41737 4.43802 4.64197 4.81894 4.94539 4.97488 5.15074 5.16904 5.21426 5.22859 5.23986 5.30293 5.36460 5.44890 5.53233 5.60033 5.69222 5.73149 5.78606 5.86138 5.95801 6.03354 6.06894 6.15333 6.20208 6.21720 6.32910 6.48127 6.54644 6.61784 6.72603 6.83296 6.87953 7.13155 7.33908 7.49762 7.59200 7.76108 7.86475 8.06949 8.17782 8.81577 9.32624 9.55380 11.01129 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.003823 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.205729 B = 7321.895813 C = 9014.069889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.081 3.919 4 H 0.069 0.931 5 C -0.119 4.119 6 C 0.092 3.908 7 H 0.056 0.944 8 C 0.059 3.941 9 N -0.541 5.541 10 C 0.032 3.968 11 C 0.198 3.802 12 H 0.060 0.940 13 O -0.561 6.561 14 C -0.573 4.573 15 H 0.056 0.944 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.105 3.895 23 C -0.111 4.111 24 C -0.052 4.052 25 C -0.196 4.196 26 C 0.106 3.894 27 N -0.523 5.523 28 C 0.309 3.691 29 N -0.455 5.455 30 C 0.017 3.983 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.343 0.657 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.149 0.851 47 H 0.089 0.911 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.263 10.518 1.723 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.022 3.978 4 H 0.087 0.913 5 C -0.158 4.158 6 C -0.014 4.014 7 H 0.074 0.926 8 C -0.070 4.070 9 N -0.264 5.264 10 C -0.095 4.095 11 C 0.139 3.861 12 H 0.077 0.923 13 O -0.363 6.363 14 C -0.612 4.612 15 H 0.074 0.926 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.714 3.286 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.023 4.023 23 C -0.115 4.115 24 C -0.079 4.079 25 C -0.217 4.217 26 C -0.051 4.051 27 N -0.237 5.237 28 C 0.078 3.922 29 N -0.175 5.175 30 C -0.111 4.111 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.186 0.814 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.167 0.833 47 H 0.107 0.893 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.055 9.930 1.182 19.770 hybrid contribution 1.715 0.136 0.370 1.759 sum -15.340 10.065 1.552 18.413 Atomic orbital electron populations 1.22792 0.81411 1.02710 0.99791 1.88021 1.19322 1.27097 1.94835 1.22872 0.95064 0.84800 0.95058 0.91336 1.22478 0.92789 1.02675 0.97831 1.21941 0.95896 0.98793 0.84805 0.92593 1.21677 0.88772 0.98381 0.98168 1.61535 1.04895 1.55865 1.04107 1.23054 0.86352 0.99891 1.00217 1.20080 0.89912 0.81862 0.94215 0.92276 1.86580 1.68515 1.57584 1.23641 1.21662 0.95776 1.06230 1.37484 0.92553 1.25040 0.97546 0.95990 0.94049 1.70085 1.35414 1.09607 1.34215 0.86648 0.85557 0.78252 0.78106 1.19712 1.20927 1.20937 1.20969 0.95161 0.96906 0.89252 1.20488 0.94619 0.97584 0.98855 1.21404 0.99746 0.92299 0.94462 1.21984 0.93969 1.01746 1.03978 1.22362 0.95784 0.93254 0.93740 1.67503 1.36628 1.04604 1.14945 1.19566 0.89425 0.88322 0.94903 1.60690 1.12742 1.32305 1.11720 1.23270 0.87635 1.02941 0.97220 0.94206 0.94054 0.89654 0.88565 0.89950 0.91049 0.90263 0.91067 0.91823 0.81357 0.93059 0.91356 0.90301 0.84624 0.85173 0.83330 0.89332 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.36 16 2 O -0.37 -4.82 10.25 -35.23 -0.36 -5.18 16 3 C 0.08 0.98 3.48 -25.74 -0.09 0.89 16 4 H 0.07 0.70 7.81 -51.93 -0.41 0.30 16 5 C -0.12 -1.50 6.24 -25.51 -0.16 -1.66 16 6 C 0.09 1.37 2.61 -68.03 -0.18 1.19 16 7 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 8 C 0.06 0.97 3.76 -5.22 -0.02 0.95 16 9 N -0.54 -9.62 4.60 -237.62 -1.09 -10.72 16 10 C 0.03 0.62 5.02 -3.83 -0.02 0.61 16 11 C 0.20 4.72 2.49 -27.88 -0.07 4.65 16 12 H 0.06 1.57 6.30 -51.93 -0.33 1.25 16 13 O -0.56 -13.58 9.99 -35.23 -0.35 -13.93 16 14 C -0.57 -15.19 8.76 -34.44 -0.30 -15.49 16 15 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 17 N -0.86 -25.01 12.84 55.43 0.71 -24.29 16 18 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.11 1.91 3.72 -4.72 -0.02 1.89 16 23 C -0.11 -1.79 5.43 -104.28 -0.57 -2.36 16 24 C -0.05 -0.71 9.81 -39.36 -0.39 -1.10 16 25 C -0.20 -2.28 10.12 -39.37 -0.40 -2.67 16 26 C 0.11 1.30 11.16 -17.56 -0.20 1.10 16 27 N -0.52 -7.76 8.16 -12.54 -0.10 -7.86 16 28 C 0.31 5.01 5.94 -155.14 -0.92 4.09 16 29 N -0.46 -7.29 4.58 -165.33 -0.76 -8.05 16 30 C 0.02 0.23 6.40 -3.20 -0.02 0.21 16 31 H 0.04 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.33 7.85 -51.93 -0.41 0.93 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.10 7.74 -51.93 -0.40 0.70 16 37 H 0.08 1.55 5.80 -51.93 -0.30 1.25 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.20 7.74 -51.93 -0.40 0.80 16 40 H 0.34 7.46 9.04 45.56 0.41 7.87 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.07 1.43 7.50 -51.93 -0.39 1.04 16 43 H 0.08 1.43 7.07 -51.93 -0.37 1.06 16 44 H 0.14 1.61 8.02 -52.48 -0.42 1.19 16 45 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 47 H 0.09 1.22 6.24 -51.93 -0.32 0.89 16 48 H 0.09 1.27 7.95 -51.93 -0.41 0.85 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -31.29 372.19 -10.36 -41.65 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.65 Total: 11.15 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.34 Total: -4.23 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -1.24 Total: -50.92 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.71 Total: -19.11 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.29 -10.36 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931470286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.450 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds