Wall clock time and date at job start Tue Mar 31 2020 17:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00040 * 2 1 4 4 O 1.21282 * 120.00211 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00180 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47229 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47009 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.47055 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00395 * 270.00411 * 8 7 6 10 10 C 1.34781 * 119.99433 * 89.99730 * 8 7 6 11 11 O 1.21585 * 120.00376 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99424 * 180.02562 * 10 8 7 13 13 C 1.39949 * 119.99925 * 184.59267 * 12 10 8 14 14 C 1.38868 * 120.06872 * 324.91110 * 13 12 10 15 15 C 1.38114 * 119.93047 * 180.02562 * 14 13 12 16 16 C 1.38274 * 120.06874 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.92959 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47324 * 90.00026 * 17 16 15 19 19 H 1.08005 * 119.99492 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00214 * 180.27586 * 18 17 16 21 21 N 1.31517 * 120.00455 * 179.72489 * 20 18 17 22 22 Si 1.86803 * 119.99885 * 359.72321 * 20 18 17 23 23 H 1.48502 * 109.46980 * 90.00147 * 22 20 18 24 24 H 1.48504 * 109.47270 * 209.99692 * 22 20 18 25 25 H 1.48499 * 109.47292 * 330.00021 * 22 20 18 26 26 C 1.38279 * 120.14432 * 0.23332 * 16 15 14 27 27 C 1.38116 * 120.06410 * 359.48832 * 26 16 15 28 28 H 1.08999 * 109.47497 * 59.99889 * 1 2 3 29 29 H 1.08997 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46764 * 299.99463 * 1 2 3 31 31 H 0.97002 * 120.00008 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47259 * 60.00285 * 5 3 2 33 33 H 1.08999 * 109.47362 * 300.00098 * 5 3 2 34 34 H 1.08996 * 109.46687 * 60.00082 * 6 5 3 35 35 H 1.08999 * 109.47046 * 300.00313 * 6 5 3 36 36 H 1.08997 * 109.46912 * 60.00577 * 7 6 5 37 37 H 1.08999 * 109.47388 * 300.00000 * 7 6 5 38 38 H 1.08997 * 109.46566 * 269.99904 * 9 8 7 39 39 H 1.09000 * 109.46732 * 29.99276 * 9 8 7 40 40 H 1.08997 * 109.47501 * 150.00002 * 9 8 7 41 41 H 0.96996 * 120.00423 * 4.59312 * 12 10 8 42 42 H 1.07999 * 120.03279 * 0.02562 * 14 13 12 43 43 H 1.08001 * 119.96516 * 179.97438 * 15 14 13 44 44 H 1.08998 * 109.46620 * 329.99859 * 17 16 15 45 45 H 1.09004 * 109.47198 * 210.00223 * 17 16 15 46 46 H 0.96995 * 120.00280 * 179.97438 * 21 20 18 47 47 H 1.08000 * 119.97015 * 179.71857 * 26 16 15 48 48 H 1.07999 * 120.03357 * 180.25219 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6098 -0.0011 7 6 5.6859 2.6097 -0.0023 8 7 6.1742 3.9910 -0.0035 9 6 6.4173 4.6810 -1.2727 10 6 6.3997 4.6269 1.1633 11 8 6.1983 4.0541 2.2167 12 7 6.8485 5.8978 1.1623 13 6 7.1741 6.5258 2.3698 14 6 6.4408 6.2514 3.5167 15 6 6.7644 6.8733 4.7067 16 6 7.8169 7.7686 4.7568 17 6 8.1669 8.4458 6.0568 18 6 9.1726 7.6088 6.8045 19 1 9.5236 6.6796 6.3803 20 6 9.6407 8.0266 8.0321 21 7 10.5144 7.2935 8.6870 22 14 9.0341 9.6341 8.7652 23 1 7.8269 9.3772 9.5910 24 1 10.0993 10.2234 9.6158 25 1 8.6939 10.5796 7.6718 26 6 8.5457 8.0480 3.6154 27 6 8.2308 7.4251 2.4235 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9500 -0.8401 -0.0004 32 1 4.0089 0.6536 -0.8909 33 1 4.0096 0.6532 0.8891 34 1 3.7929 3.1237 0.8889 35 1 3.7921 3.1234 -0.8910 36 1 6.0484 2.0959 -0.8926 37 1 6.0499 2.0960 0.8874 38 1 7.4465 4.5096 -1.5880 39 1 5.7359 4.2965 -2.0315 40 1 6.2504 5.7503 -1.1427 41 1 6.9457 6.3771 0.3247 42 1 5.6184 5.5525 3.4781 43 1 6.1941 6.6606 5.5990 44 1 7.2669 8.5587 6.6614 45 1 8.5924 9.4282 5.8518 46 1 10.8440 7.5876 9.5505 47 1 9.3644 8.7512 3.6567 48 1 8.8030 7.6407 1.5333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932572539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:42 Heat of formation + Delta-G solvation = -38.498140 kcal Electronic energy + Delta-G solvation = -27394.617602 eV Core-core repulsion = 23449.639036 eV Total energy + Delta-G solvation = -3944.978566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68167 -39.99225 -38.50957 -36.27818 -35.00818 -34.92979 -33.63935 -32.74706 -30.69462 -30.25974 -28.84837 -27.26389 -26.96149 -25.57631 -23.14570 -22.29924 -22.15759 -20.73038 -20.39153 -19.71814 -18.47938 -17.61257 -17.11674 -16.70112 -16.38102 -16.22863 -15.80265 -15.50153 -14.84328 -14.79905 -14.40796 -14.08330 -14.01314 -13.95836 -13.46142 -13.26405 -13.13965 -12.91910 -12.82195 -12.70784 -12.41782 -12.39243 -12.25338 -12.12800 -11.92361 -11.59231 -11.47151 -11.00142 -10.76005 -10.41305 -10.31981 -10.25619 -10.04842 -9.72227 -9.56552 -9.56202 -9.22723 -8.89982 -8.52494 -8.25300 -7.32589 -6.01181 -3.99824 1.95505 2.09729 2.29178 2.46834 2.84011 3.19592 3.33277 3.40516 3.43607 3.77684 4.31953 4.46792 4.50794 4.58883 4.61562 4.72858 4.76984 4.92665 5.02268 5.07777 5.16936 5.23891 5.28044 5.30369 5.37210 5.38826 5.45284 5.62193 5.74461 5.92080 5.94259 6.00832 6.05475 6.10597 6.20205 6.31283 6.58133 6.67494 6.92776 7.01431 7.03068 7.03278 7.10493 7.17774 7.67326 7.68805 7.78927 7.83462 7.84431 8.53589 8.57009 9.05417 9.59118 11.11875 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.001982 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.968375 B =14121.071732 C =15108.770578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.740 5.740 3 C 0.511 3.489 4 O -0.536 6.536 5 C -0.137 4.137 6 C -0.121 4.121 7 C 0.134 3.866 8 N -0.633 5.633 9 C 0.078 3.922 10 C 0.703 3.297 11 O -0.566 6.566 12 N -0.682 5.682 13 C 0.124 3.876 14 C -0.115 4.115 15 C -0.106 4.106 16 C -0.041 4.041 17 C 0.015 3.985 18 C -0.511 4.511 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 C -0.106 4.106 27 C -0.144 4.144 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.402 0.598 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.400 0.600 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.023 0.977 45 H 0.027 0.973 46 H 0.263 0.737 47 H 0.122 0.878 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.497 -13.222 -26.014 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.297 3.703 4 O -0.412 6.412 5 C -0.178 4.178 6 C -0.161 4.161 7 C 0.010 3.990 8 N -0.371 5.371 9 C -0.065 4.065 10 C 0.405 3.595 11 O -0.442 6.442 12 N -0.330 5.330 13 C 0.031 3.969 14 C -0.135 4.135 15 C -0.125 4.125 16 C -0.042 4.042 17 C -0.022 4.022 18 C -0.549 4.549 19 H 0.092 0.908 20 C -0.134 4.134 21 N -0.540 5.540 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.124 4.124 27 C -0.165 4.165 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.237 0.763 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.041 0.959 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.140 0.860 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.987 -12.919 -25.121 31.977 hybrid contribution 0.067 0.459 -0.046 0.466 sum -14.921 -12.460 -25.166 31.800 Atomic orbital electron populations 1.21533 0.79709 1.02169 1.02396 1.45855 1.07843 1.08865 1.76691 1.20818 0.90524 0.83494 0.75439 1.90734 1.70595 1.31308 1.48575 1.21589 0.91530 1.00006 1.04668 1.21738 0.95288 0.94810 1.04235 1.21336 0.93148 0.81158 1.03324 1.46987 1.70595 1.14822 1.04697 1.21741 1.01558 0.97299 0.85915 1.15876 0.78464 0.81199 0.83978 1.90950 1.57462 1.66350 1.29394 1.42605 1.69238 1.12406 1.08771 1.17340 0.96547 0.97615 0.85405 1.21163 1.00101 1.00319 0.91960 1.20987 0.97989 0.96530 0.96984 1.20289 0.92946 0.95055 0.95866 1.18798 0.97161 0.96057 0.90205 1.20965 1.23090 1.07937 1.02883 0.90794 1.25009 0.94713 0.96941 0.96698 1.69907 1.31110 1.38253 1.14682 0.86800 0.78651 0.84530 0.79488 1.20199 1.21333 1.18930 1.20813 0.99631 1.00486 0.91507 1.20702 0.96613 1.00565 0.98621 0.92297 0.90686 0.92181 0.76433 0.88741 0.88324 0.90398 0.91242 0.90507 0.89383 0.92408 0.90643 0.91573 0.76335 0.85110 0.86080 0.95866 0.95452 0.92684 0.85989 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.74 -4.23 5.71 -67.08 -0.38 -4.61 16 3 C 0.51 4.53 7.83 -10.99 -0.09 4.44 16 4 O -0.54 -7.32 15.98 5.56 0.09 -7.23 16 5 C -0.14 -0.84 5.70 -27.88 -0.16 -1.00 16 6 C -0.12 -1.07 4.83 -26.73 -0.13 -1.20 16 7 C 0.13 1.12 5.41 -4.04 -0.02 1.10 16 8 N -0.63 -6.42 2.87 -187.35 -0.54 -6.96 16 9 C 0.08 0.48 10.24 59.85 0.61 1.09 16 10 C 0.70 10.23 8.12 -86.91 -0.71 9.53 16 11 O -0.57 -10.57 13.36 5.29 0.07 -10.50 16 12 N -0.68 -9.24 5.22 -14.22 -0.07 -9.31 16 13 C 0.12 2.13 6.30 -83.69 -0.53 1.60 16 14 C -0.12 -2.23 8.70 -39.39 -0.34 -2.57 16 15 C -0.11 -2.22 9.69 -39.61 -0.38 -2.60 16 16 C -0.04 -0.90 5.07 -104.59 -0.53 -1.43 16 17 C 0.01 0.37 4.17 -29.03 -0.12 0.25 16 18 C -0.51 -14.91 9.65 -34.44 -0.33 -15.25 16 19 H 0.07 2.38 7.98 -52.48 -0.42 1.96 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 22 Si 0.88 21.80 27.46 -169.99 -4.67 17.14 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.26 -6.27 6.55 56.52 0.37 -5.90 16 26 C -0.11 -2.05 9.69 -39.61 -0.38 -2.43 16 27 C -0.14 -2.40 9.97 -39.40 -0.39 -2.80 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.40 0.97 8.83 -40.82 -0.36 0.61 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.09 0.89 7.42 -51.93 -0.39 0.50 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 40 H 0.07 0.35 6.30 -51.93 -0.33 0.03 16 41 H 0.40 3.92 6.52 -40.82 -0.27 3.65 16 42 H 0.13 2.57 6.22 -52.49 -0.33 2.24 16 43 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 44 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 45 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 48 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -38.99 398.46 -9.18 -48.18 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.50 Total: 2.98 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.96 Total: -8.27 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.22 Total: -48.29 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.16 Total: -17.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.99 -9.18 -48.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932572539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.677 kcal (2) G-P(sol) polarization free energy of solvation -38.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds