Wall clock time and date at job start Tue Mar 31 2020 17:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00040 * 2 1 4 4 O 1.21282 * 120.00211 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00180 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47229 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47009 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.47055 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00395 * 270.00411 * 8 7 6 10 10 C 1.34781 * 119.99433 * 89.99730 * 8 7 6 11 11 O 1.21585 * 120.00376 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99424 * 180.02562 * 10 8 7 13 13 C 1.39949 * 119.99925 * 184.59267 * 12 10 8 14 14 C 1.38868 * 120.06872 * 324.91110 * 13 12 10 15 15 C 1.38114 * 119.93047 * 180.02562 * 14 13 12 16 16 C 1.38274 * 120.06874 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.92959 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47324 * 90.00026 * 17 16 15 19 19 H 1.08005 * 119.99492 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00214 * 180.27586 * 18 17 16 21 21 N 1.31517 * 120.00455 * 179.72489 * 20 18 17 22 22 Si 1.86803 * 119.99885 * 359.72321 * 20 18 17 23 23 H 1.48502 * 109.46980 * 90.00147 * 22 20 18 24 24 H 1.48504 * 109.47270 * 209.99692 * 22 20 18 25 25 H 1.48499 * 109.47292 * 330.00021 * 22 20 18 26 26 C 1.38279 * 120.14432 * 0.23332 * 16 15 14 27 27 C 1.38116 * 120.06410 * 359.48832 * 26 16 15 28 28 H 1.08999 * 109.47497 * 59.99889 * 1 2 3 29 29 H 1.08997 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46764 * 299.99463 * 1 2 3 31 31 H 0.97002 * 120.00008 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47259 * 60.00285 * 5 3 2 33 33 H 1.08999 * 109.47362 * 300.00098 * 5 3 2 34 34 H 1.08996 * 109.46687 * 60.00082 * 6 5 3 35 35 H 1.08999 * 109.47046 * 300.00313 * 6 5 3 36 36 H 1.08997 * 109.46912 * 60.00577 * 7 6 5 37 37 H 1.08999 * 109.47388 * 300.00000 * 7 6 5 38 38 H 1.08997 * 109.46566 * 269.99904 * 9 8 7 39 39 H 1.09000 * 109.46732 * 29.99276 * 9 8 7 40 40 H 1.08997 * 109.47501 * 150.00002 * 9 8 7 41 41 H 0.96996 * 120.00423 * 4.59312 * 12 10 8 42 42 H 1.07999 * 120.03279 * 0.02562 * 14 13 12 43 43 H 1.08001 * 119.96516 * 179.97438 * 15 14 13 44 44 H 1.08998 * 109.46620 * 329.99859 * 17 16 15 45 45 H 1.09004 * 109.47198 * 210.00223 * 17 16 15 46 46 H 0.96995 * 120.00280 * 179.97438 * 21 20 18 47 47 H 1.08000 * 119.97015 * 179.71857 * 26 16 15 48 48 H 1.07999 * 120.03357 * 180.25219 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6098 -0.0011 7 6 5.6859 2.6097 -0.0023 8 7 6.1742 3.9910 -0.0035 9 6 6.4173 4.6810 -1.2727 10 6 6.3997 4.6269 1.1633 11 8 6.1983 4.0541 2.2167 12 7 6.8485 5.8978 1.1623 13 6 7.1741 6.5258 2.3698 14 6 6.4408 6.2514 3.5167 15 6 6.7644 6.8733 4.7067 16 6 7.8169 7.7686 4.7568 17 6 8.1669 8.4458 6.0568 18 6 9.1726 7.6088 6.8045 19 1 9.5236 6.6796 6.3803 20 6 9.6407 8.0266 8.0321 21 7 10.5144 7.2935 8.6870 22 14 9.0341 9.6341 8.7652 23 1 7.8269 9.3772 9.5910 24 1 10.0993 10.2234 9.6158 25 1 8.6939 10.5796 7.6718 26 6 8.5457 8.0480 3.6154 27 6 8.2308 7.4251 2.4235 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9500 -0.8401 -0.0004 32 1 4.0089 0.6536 -0.8909 33 1 4.0096 0.6532 0.8891 34 1 3.7929 3.1237 0.8889 35 1 3.7921 3.1234 -0.8910 36 1 6.0484 2.0959 -0.8926 37 1 6.0499 2.0960 0.8874 38 1 7.4465 4.5096 -1.5880 39 1 5.7359 4.2965 -2.0315 40 1 6.2504 5.7503 -1.1427 41 1 6.9457 6.3771 0.3247 42 1 5.6184 5.5525 3.4781 43 1 6.1941 6.6606 5.5990 44 1 7.2669 8.5587 6.6614 45 1 8.5924 9.4282 5.8518 46 1 10.8440 7.5876 9.5505 47 1 9.3644 8.7512 3.6567 48 1 8.8030 7.6407 1.5333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932572539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:41 Heat of formation + Delta-G solvation = -66.755870 kcal Electronic energy + Delta-G solvation = -27395.842949 eV Core-core repulsion = 23449.639036 eV Total energy + Delta-G solvation = -3946.203913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80123 -40.70959 -39.87737 -37.24272 -36.29619 -35.62898 -35.04051 -34.18780 -32.42225 -31.76424 -29.58594 -28.68575 -27.67310 -26.44585 -24.70231 -23.80933 -23.16251 -21.87211 -21.35430 -20.91213 -19.47575 -18.95488 -18.38746 -18.15227 -17.12224 -16.91730 -16.82570 -16.64663 -16.30653 -15.96002 -15.75760 -15.40765 -14.95201 -14.83056 -14.72560 -14.37659 -14.34041 -14.16244 -13.90444 -13.82806 -13.49491 -13.43359 -13.25893 -13.11657 -12.99759 -12.71006 -12.59254 -12.52199 -12.09667 -11.98697 -11.80746 -11.69308 -11.56751 -11.22138 -11.00540 -10.88824 -10.77741 -10.14615 -9.75838 -9.74261 -8.78990 -8.28402 -6.33729 0.47595 0.58116 1.37739 1.39237 1.51734 1.53029 1.63021 2.02561 2.33472 2.36707 2.88658 2.99243 3.05512 3.78458 3.95990 4.01525 4.05740 4.17077 4.24192 4.33223 4.38041 4.42727 4.53722 4.57646 4.59813 4.63382 4.66002 4.68304 4.74288 4.79916 4.89569 4.92403 5.06220 5.07835 5.08481 5.26340 5.26893 5.39134 5.44793 5.45427 5.56987 5.59090 5.66202 5.87726 6.01731 6.18558 6.31051 6.55593 6.72574 6.83635 7.27628 7.29378 7.45447 8.88314 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.001982 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.968375 B =14121.071732 C =15108.770578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.726 5.726 3 C 0.502 3.498 4 O -0.595 6.595 5 C -0.129 4.129 6 C -0.113 4.113 7 C 0.132 3.868 8 N -0.626 5.626 9 C 0.069 3.931 10 C 0.692 3.308 11 O -0.616 6.616 12 N -0.669 5.669 13 C 0.136 3.864 14 C -0.128 4.128 15 C -0.121 4.121 16 C -0.076 4.076 17 C 0.022 3.978 18 C -0.520 4.520 19 H 0.024 0.976 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.954 3.046 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.242 1.242 26 C -0.110 4.110 27 C -0.130 4.130 28 H 0.049 0.951 29 H 0.111 0.889 30 H 0.040 0.960 31 H 0.421 0.579 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.421 0.579 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.026 0.974 45 H 0.038 0.962 46 H 0.267 0.733 47 H 0.134 0.866 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 -13.129 -29.377 35.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.378 5.378 3 C 0.290 3.710 4 O -0.476 6.476 5 C -0.169 4.169 6 C -0.152 4.152 7 C 0.010 3.990 8 N -0.362 5.362 9 C -0.073 4.073 10 C 0.394 3.606 11 O -0.496 6.496 12 N -0.320 5.320 13 C 0.041 3.959 14 C -0.148 4.148 15 C -0.139 4.139 16 C -0.077 4.077 17 C -0.015 4.015 18 C -0.558 4.558 19 H 0.042 0.958 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.777 3.223 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.165 1.165 26 C -0.129 4.129 27 C -0.150 4.150 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.059 0.941 31 H 0.258 0.742 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.262 0.738 42 H 0.139 0.861 43 H 0.130 0.870 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.152 0.848 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.990 -12.879 -28.583 34.750 hybrid contribution 0.032 0.226 0.841 0.872 sum -14.958 -12.653 -27.742 33.963 Atomic orbital electron populations 1.21632 0.79484 1.04102 1.01025 1.45796 1.08176 1.08952 1.74890 1.21370 0.91738 0.83377 0.74549 1.90710 1.71844 1.33445 1.51562 1.21599 0.89493 0.98624 1.07194 1.21593 0.95629 0.96245 1.01736 1.21518 0.92576 0.80451 1.04481 1.47132 1.69025 1.15351 1.04683 1.22082 1.03398 0.97595 0.84217 1.16201 0.78349 0.81337 0.84683 1.90923 1.59483 1.67451 1.31737 1.42423 1.68815 1.12308 1.08445 1.17434 0.95668 0.96789 0.85962 1.21136 1.00637 1.00416 0.92633 1.20968 0.98324 0.97162 0.97491 1.20189 0.94790 0.96800 0.95899 1.18643 0.95781 0.95837 0.91230 1.21184 1.24149 1.06863 1.03612 0.95805 1.26033 0.94715 1.01367 0.97072 1.70071 1.32851 1.40746 1.15416 0.85602 0.78219 0.79432 0.79072 1.19360 1.20651 1.16495 1.21021 0.99393 1.00806 0.91634 1.21026 0.95952 0.98874 0.99186 0.93225 0.87055 0.94094 0.74198 0.84488 0.87201 0.95321 0.91305 0.85941 0.91419 0.90521 0.88271 0.90781 0.73805 0.86112 0.87011 0.95578 0.94352 0.92382 0.84834 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.70 127.77 1.37 2.18 16 2 N -0.73 -7.29 5.71 -484.52 -2.77 -10.06 16 3 C 0.50 8.67 7.83 87.66 0.69 9.35 16 4 O -0.59 -16.96 15.98 -3.04 -0.05 -17.01 16 5 C -0.13 -1.35 5.70 29.85 0.17 -1.18 16 6 C -0.11 -1.93 4.83 30.60 0.15 -1.78 16 7 C 0.13 1.97 5.41 86.38 0.47 2.43 16 8 N -0.63 -11.46 2.87 -864.92 -2.49 -13.94 16 9 C 0.07 0.58 10.24 127.77 1.31 1.89 16 10 C 0.69 19.74 8.12 179.05 1.45 21.20 16 11 O -0.62 -23.83 13.36 -3.98 -0.05 -23.89 16 12 N -0.67 -16.96 5.22 -317.17 -1.65 -18.61 16 13 C 0.14 4.53 6.30 38.15 0.24 4.77 16 14 C -0.13 -5.10 8.70 22.39 0.19 -4.91 16 15 C -0.12 -5.27 9.69 22.25 0.22 -5.05 16 16 C -0.08 -3.41 5.07 -19.84 -0.10 -3.51 16 17 C 0.02 1.11 4.17 29.10 0.12 1.23 16 18 C -0.52 -31.55 9.65 25.60 0.25 -31.30 16 19 H 0.02 1.62 7.98 -2.91 -0.02 1.60 16 20 C 0.00 0.29 5.47 84.65 0.46 0.75 16 21 N -0.95 -61.42 13.96 21.44 0.30 -61.12 16 22 Si 0.95 45.19 27.46 68.60 1.88 47.08 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.24 -10.48 6.55 99.48 0.65 -9.83 16 26 C -0.11 -4.16 9.69 22.25 0.22 -3.94 16 27 C -0.13 -4.03 9.97 22.39 0.22 -3.81 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.42 0.95 8.83 -92.71 -0.82 0.13 16 32 H 0.14 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.03 0.77 8.10 -2.39 -0.02 0.75 16 35 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.12 0.75 8.07 -2.39 -0.02 0.73 16 37 H 0.07 1.32 7.42 -2.39 -0.02 1.31 16 38 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 40 H 0.07 0.52 6.30 -2.39 -0.02 0.50 16 41 H 0.42 6.88 6.52 -92.71 -0.60 6.28 16 42 H 0.12 5.05 6.22 -2.91 -0.02 5.03 16 43 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.03 1.26 7.51 -2.39 -0.02 1.25 16 45 H 0.04 1.80 7.15 -2.38 -0.02 1.79 16 46 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 47 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 48 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -92.88 398.46 2.10 -90.78 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -0.50 Total: 18.44 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 7.42 Total: -11.67 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -6.61 Total: -103.74 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.10 Total: -40.89 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -92.88 2.10 -90.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932572539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.029 kcal (2) G-P(sol) polarization free energy of solvation -92.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds