Wall clock time and date at job start Tue Mar 31 2020 17:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35424 * 116.99876 * 2 1 4 4 N 1.32235 * 119.80057 * 0.02562 * 3 2 1 5 5 C 1.31885 * 121.80126 * 180.02562 * 4 3 2 6 6 C 1.38355 * 121.18247 * 0.27782 * 5 4 3 7 7 C 1.38331 * 119.46268 * 359.45315 * 6 5 4 8 8 C 1.39993 * 118.34387 * 0.52951 * 7 6 5 9 9 C 1.47530 * 120.59537 * 179.71019 * 8 7 6 10 10 O 1.21588 * 119.99976 * 146.84783 * 9 8 7 11 11 N 1.34778 * 119.99684 * 326.84716 * 9 8 7 12 12 C 1.46497 * 120.00440 * 4.94187 * 11 9 8 13 13 C 1.46499 * 119.99496 * 184.94409 * 11 9 8 14 14 H 1.08998 * 110.21748 * 359.97438 * 13 11 9 15 15 C 1.50120 * 110.25085 * 121.93395 * 13 11 9 16 16 C 1.54636 * 110.92949 * 216.54293 * 15 13 11 17 17 C 1.54899 * 110.19063 * 321.33449 * 16 15 13 18 18 N 1.43437 * 116.07764 * 318.53018 * 17 16 15 19 19 C 1.36938 * 120.53845 * 271.58377 * 18 17 16 20 20 H 1.08001 * 119.99815 * 336.99629 * 19 18 17 21 21 C 1.38816 * 119.99995 * 156.98789 * 19 18 17 22 22 N 1.31618 * 119.99742 * 340.03144 * 21 19 18 23 23 Si 1.86798 * 119.99728 * 160.02538 * 21 19 18 24 24 H 1.48503 * 109.46861 * 60.00716 * 23 21 19 25 25 H 1.48499 * 109.46890 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47444 * 300.00457 * 23 21 19 27 27 C 1.50170 * 118.92608 * 91.56540 * 18 17 16 28 28 C 1.46236 * 107.53298 * 289.58862 * 27 18 17 29 29 H 1.09003 * 109.46991 * 299.99872 * 1 2 3 30 30 H 1.09000 * 109.47147 * 59.99635 * 1 2 3 31 31 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.40617 * 180.02562 * 5 4 3 33 33 H 1.08007 * 120.26696 * 179.72152 * 6 5 4 34 34 H 1.07997 * 120.83293 * 180.26916 * 7 6 5 35 35 H 1.09000 * 109.46787 * 95.69919 * 12 11 9 36 36 H 1.09001 * 109.47398 * 215.70107 * 12 11 9 37 37 H 1.09002 * 109.47171 * 335.70441 * 12 11 9 38 38 H 1.09003 * 109.21064 * 336.99829 * 15 13 11 39 39 H 1.09010 * 109.21219 * 96.30997 * 15 13 11 40 40 H 1.08998 * 109.42498 * 201.05917 * 16 15 13 41 41 H 1.09000 * 109.13662 * 81.42893 * 16 15 13 42 42 H 1.08991 * 108.16179 * 196.81683 * 17 16 15 43 43 H 1.08999 * 108.15808 * 80.24095 * 17 16 15 44 44 H 0.97006 * 119.99583 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.84576 * 170.07722 * 27 18 17 46 46 H 1.09008 * 109.90268 * 49.12696 * 27 18 17 47 47 H 1.09005 * 108.52452 * 297.16715 * 28 27 18 48 48 H 1.09006 * 108.52112 * 179.64870 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3131 0.0005 5 6 1.8770 3.5084 0.0000 6 6 3.2525 3.6575 -0.0068 7 6 4.0587 2.5334 -0.0017 8 6 3.4449 1.2753 -0.0011 9 6 4.2570 0.0436 -0.0022 10 8 3.8563 -0.9493 0.5739 11 7 5.4430 0.0190 -0.6420 12 6 5.9764 1.2437 -1.2435 13 6 6.1987 -1.2325 -0.7358 14 1 5.6585 -2.0370 -0.2368 15 6 6.4439 -1.5848 -2.1744 16 6 6.3656 -3.1141 -2.3896 17 6 7.0079 -3.8562 -1.1912 18 7 8.2248 -3.2943 -0.6804 19 6 9.4353 -3.6657 -1.2018 20 1 9.5359 -4.6123 -1.7121 21 6 10.5330 -2.8256 -1.0746 22 7 10.3565 -1.5457 -0.8235 23 14 12.2606 -3.5117 -1.2596 24 1 12.4161 -4.1027 -2.6131 25 1 13.2492 -2.4184 -1.0798 26 1 12.4897 -4.5595 -0.2326 27 6 8.1497 -2.2917 0.4350 28 6 7.5817 -1.0618 -0.1155 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2484 4.3867 0.0009 33 1 3.6932 4.6436 -0.0116 34 1 5.1349 2.6241 -0.0025 35 1 6.6683 1.7185 -0.5479 36 1 6.5013 0.9965 -2.1663 37 1 5.1564 1.9273 -1.4638 38 1 5.6940 -1.0957 -2.7962 39 1 7.4342 -1.2346 -2.4657 40 1 6.8954 -3.3790 -3.3046 41 1 5.3201 -3.4094 -2.4790 42 1 7.2097 -4.8830 -1.4961 43 1 6.2804 -3.8851 -0.3801 44 1 11.1237 -0.9587 -0.7342 45 1 9.1488 -2.0960 0.8245 46 1 7.5097 -2.6705 1.2320 47 1 8.2589 -0.6792 -0.8792 48 1 7.5141 -0.3236 0.6836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948734480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:37 Heat of formation + Delta-G solvation = 23.008333 kcal Electronic energy + Delta-G solvation = -30162.896624 eV Core-core repulsion = 26220.585180 eV Total energy + Delta-G solvation = -3942.311445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14231 -39.51735 -38.05917 -37.50591 -35.25771 -33.43748 -32.35495 -31.21438 -30.81568 -30.39748 -27.47937 -27.00742 -26.16226 -24.88205 -23.49241 -23.06305 -23.01635 -20.43221 -19.65508 -18.75120 -18.28381 -17.36679 -16.93912 -16.64785 -16.23756 -15.79947 -15.38464 -15.08405 -14.74030 -14.29527 -14.20612 -13.87296 -13.77712 -13.65894 -13.52019 -13.16352 -12.87090 -12.79630 -12.61965 -11.95055 -11.91107 -11.79007 -11.72635 -11.36391 -11.28282 -11.18953 -10.74795 -10.71817 -10.27675 -10.20499 -10.09839 -10.03879 -9.88103 -9.76556 -9.41368 -9.34672 -9.25908 -8.72488 -8.47265 -8.14368 -6.70050 -5.78189 -3.15700 0.58637 1.02123 2.86788 2.98443 3.23181 3.39715 3.45272 3.48207 3.64306 4.02599 4.52669 4.53722 4.57849 4.75722 4.94052 5.12878 5.16047 5.17005 5.25048 5.36632 5.43070 5.46865 5.52455 5.62332 5.66832 5.78763 5.80811 5.83240 5.90700 6.09865 6.22530 6.31861 6.35572 6.56601 6.57843 6.66527 6.91251 6.94045 6.97220 7.05677 7.09760 7.16505 7.27466 7.51167 7.56171 7.74175 7.77474 7.94986 8.44041 8.46713 9.20788 9.88929 10.42638 11.29413 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.003102 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.343303 B = 9024.048117 C = 9789.451426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.279 6.279 3 C 0.367 3.633 4 N -0.547 5.547 5 C 0.158 3.842 6 C -0.223 4.223 7 C -0.021 4.021 8 C -0.200 4.200 9 C 0.562 3.438 10 O -0.523 6.523 11 N -0.597 5.597 12 C 0.062 3.938 13 C 0.143 3.857 14 H 0.098 0.902 15 C -0.112 4.112 16 C -0.139 4.139 17 C 0.154 3.846 18 N -0.588 5.588 19 C -0.245 4.245 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.168 3.832 28 C -0.132 4.132 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.252 0.748 45 H 0.093 0.907 46 H 0.008 0.992 47 H 0.104 0.896 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 12.418 -0.142 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.183 6.183 3 C 0.187 3.813 4 N -0.271 5.271 5 C 0.001 3.999 6 C -0.243 4.243 7 C -0.047 4.047 8 C -0.206 4.206 9 C 0.348 3.652 10 O -0.399 6.399 11 N -0.329 5.329 12 C -0.081 4.081 13 C 0.042 3.958 14 H 0.116 0.884 15 C -0.151 4.151 16 C -0.181 4.181 17 C 0.025 3.975 18 N -0.309 5.309 19 C -0.374 4.374 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.213 1.213 27 C 0.044 3.956 28 C -0.171 4.171 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.179 0.821 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.026 0.974 47 H 0.123 0.877 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.491 11.592 0.195 20.158 hybrid contribution 1.598 0.254 -0.345 1.654 sum -14.893 11.846 -0.149 19.030 Atomic orbital electron populations 1.22929 0.77389 1.03286 1.02179 1.86459 1.22520 1.23372 1.85955 1.19790 0.88049 0.85030 0.88387 1.67440 1.40358 0.98677 1.20651 1.22608 0.93111 0.93649 0.90510 1.21949 0.94726 0.99890 1.07752 1.22244 1.01915 0.90338 0.90171 1.20063 0.91676 0.95567 1.13306 1.17788 0.80903 0.87007 0.79463 1.90794 1.70691 1.35105 1.43320 1.47928 1.19524 1.11022 1.54439 1.22310 0.99162 0.87287 0.99331 1.20661 0.93369 0.84213 0.97588 0.88386 1.21714 1.01526 0.96951 0.94891 1.22780 0.98732 0.95184 1.01378 1.20431 0.88659 0.95209 0.93199 1.44248 1.00943 1.49582 1.36171 1.19194 0.86073 0.99809 1.32360 0.91542 1.24853 0.98319 0.94739 1.01737 1.69952 1.28969 1.02121 1.53744 0.86405 0.84687 0.77933 0.77960 1.21152 1.21808 1.21258 1.20104 1.00163 0.87297 0.88035 1.21328 0.93976 1.00174 1.01661 0.92235 0.92358 0.88384 0.82055 0.83895 0.82241 0.91971 0.90658 0.90602 0.94276 0.90464 0.92792 0.93734 0.94872 0.95167 0.93819 0.88935 0.97400 0.87741 0.95208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.28 -4.28 9.08 -36.13 -0.33 -4.61 16 3 C 0.37 5.32 7.48 -16.61 -0.12 5.19 16 4 N -0.55 -6.60 9.21 -12.98 -0.12 -6.72 16 5 C 0.16 1.39 11.17 -17.49 -0.20 1.20 16 6 C -0.22 -1.81 10.09 -39.50 -0.40 -2.21 16 7 C -0.02 -0.22 7.53 -38.89 -0.29 -0.52 16 8 C -0.20 -2.89 5.47 -104.69 -0.57 -3.46 16 9 C 0.56 9.98 7.31 -12.47 -0.09 9.89 16 10 O -0.52 -11.21 15.26 -12.88 -0.20 -11.41 16 11 N -0.60 -9.99 2.63 -177.10 -0.47 -10.46 16 12 C 0.06 0.79 8.17 59.85 0.49 1.28 16 13 C 0.14 2.78 2.30 -69.60 -0.16 2.62 16 14 H 0.10 2.14 5.12 -51.93 -0.27 1.87 16 15 C -0.11 -2.17 4.34 -27.30 -0.12 -2.28 16 16 C -0.14 -2.73 6.40 -24.87 -0.16 -2.88 16 17 C 0.15 3.34 5.17 -4.66 -0.02 3.32 16 18 N -0.59 -14.45 2.60 -175.08 -0.46 -14.91 16 19 C -0.24 -6.53 9.63 -15.06 -0.14 -6.67 16 20 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 22 N -0.90 -24.13 9.44 55.49 0.52 -23.61 16 23 Si 0.90 21.24 29.60 -169.99 -5.03 16.21 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.17 3.97 5.24 -5.20 -0.03 3.94 16 28 C -0.13 -2.80 4.19 -30.18 -0.13 -2.93 16 29 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.16 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.16 1.42 5.05 -52.49 -0.27 1.16 16 35 H 0.06 0.72 7.54 -51.93 -0.39 0.33 16 36 H 0.07 0.99 7.20 -51.93 -0.37 0.61 16 37 H 0.08 0.79 4.63 -51.93 -0.24 0.55 16 38 H 0.04 0.69 7.81 -51.93 -0.41 0.29 16 39 H 0.08 1.67 6.84 -51.92 -0.36 1.32 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.71 7.99 -51.93 -0.41 0.29 16 43 H 0.03 0.64 6.90 -51.93 -0.36 0.28 16 44 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 45 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 46 H 0.01 0.18 8.13 -51.92 -0.42 -0.24 16 47 H 0.10 2.46 5.32 -51.93 -0.28 2.18 16 48 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -31.83 368.45 -8.51 -40.34 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.00 Total: 1.74 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.98 Total: 7.87 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.52 Total: -55.69 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.52 Total: -16.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.83 -8.51 -40.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948734480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.346 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds