Wall clock time and date at job start Tue Mar 31 2020 17:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35424 * 116.99876 * 2 1 4 4 N 1.32235 * 119.80057 * 0.02562 * 3 2 1 5 5 C 1.31885 * 121.80126 * 180.02562 * 4 3 2 6 6 C 1.38355 * 121.18247 * 0.27782 * 5 4 3 7 7 C 1.38331 * 119.46268 * 359.45315 * 6 5 4 8 8 C 1.39993 * 118.34387 * 0.52951 * 7 6 5 9 9 C 1.47530 * 120.59537 * 179.71019 * 8 7 6 10 10 O 1.21588 * 119.99976 * 146.84783 * 9 8 7 11 11 N 1.34778 * 119.99684 * 326.84716 * 9 8 7 12 12 C 1.46497 * 120.00440 * 4.94187 * 11 9 8 13 13 C 1.46499 * 119.99496 * 184.94409 * 11 9 8 14 14 H 1.08998 * 110.21748 * 359.97438 * 13 11 9 15 15 C 1.50120 * 110.25085 * 121.93395 * 13 11 9 16 16 C 1.54636 * 110.92949 * 216.54293 * 15 13 11 17 17 C 1.54899 * 110.19063 * 321.33449 * 16 15 13 18 18 N 1.43437 * 116.07764 * 318.53018 * 17 16 15 19 19 C 1.36938 * 120.53845 * 271.58377 * 18 17 16 20 20 H 1.08001 * 119.99815 * 336.99629 * 19 18 17 21 21 C 1.38816 * 119.99995 * 156.98789 * 19 18 17 22 22 N 1.31618 * 119.99742 * 340.03144 * 21 19 18 23 23 Si 1.86798 * 119.99728 * 160.02538 * 21 19 18 24 24 H 1.48503 * 109.46861 * 60.00716 * 23 21 19 25 25 H 1.48499 * 109.46890 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47444 * 300.00457 * 23 21 19 27 27 C 1.50170 * 118.92608 * 91.56540 * 18 17 16 28 28 C 1.46236 * 107.53298 * 289.58862 * 27 18 17 29 29 H 1.09003 * 109.46991 * 299.99872 * 1 2 3 30 30 H 1.09000 * 109.47147 * 59.99635 * 1 2 3 31 31 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.40617 * 180.02562 * 5 4 3 33 33 H 1.08007 * 120.26696 * 179.72152 * 6 5 4 34 34 H 1.07997 * 120.83293 * 180.26916 * 7 6 5 35 35 H 1.09000 * 109.46787 * 95.69919 * 12 11 9 36 36 H 1.09001 * 109.47398 * 215.70107 * 12 11 9 37 37 H 1.09002 * 109.47171 * 335.70441 * 12 11 9 38 38 H 1.09003 * 109.21064 * 336.99829 * 15 13 11 39 39 H 1.09010 * 109.21219 * 96.30997 * 15 13 11 40 40 H 1.08998 * 109.42498 * 201.05917 * 16 15 13 41 41 H 1.09000 * 109.13662 * 81.42893 * 16 15 13 42 42 H 1.08991 * 108.16179 * 196.81683 * 17 16 15 43 43 H 1.08999 * 108.15808 * 80.24095 * 17 16 15 44 44 H 0.97006 * 119.99583 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.84576 * 170.07722 * 27 18 17 46 46 H 1.09008 * 109.90268 * 49.12696 * 27 18 17 47 47 H 1.09005 * 108.52452 * 297.16715 * 28 27 18 48 48 H 1.09006 * 108.52112 * 179.64870 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3131 0.0005 5 6 1.8770 3.5084 0.0000 6 6 3.2525 3.6575 -0.0068 7 6 4.0587 2.5334 -0.0017 8 6 3.4449 1.2753 -0.0011 9 6 4.2570 0.0436 -0.0022 10 8 3.8563 -0.9493 0.5739 11 7 5.4430 0.0190 -0.6420 12 6 5.9764 1.2437 -1.2435 13 6 6.1987 -1.2325 -0.7358 14 1 5.6585 -2.0370 -0.2368 15 6 6.4439 -1.5848 -2.1744 16 6 6.3656 -3.1141 -2.3896 17 6 7.0079 -3.8562 -1.1912 18 7 8.2248 -3.2943 -0.6804 19 6 9.4353 -3.6657 -1.2018 20 1 9.5359 -4.6123 -1.7121 21 6 10.5330 -2.8256 -1.0746 22 7 10.3565 -1.5457 -0.8235 23 14 12.2606 -3.5117 -1.2596 24 1 12.4161 -4.1027 -2.6131 25 1 13.2492 -2.4184 -1.0798 26 1 12.4897 -4.5595 -0.2326 27 6 8.1497 -2.2917 0.4350 28 6 7.5817 -1.0618 -0.1155 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2484 4.3867 0.0009 33 1 3.6932 4.6436 -0.0116 34 1 5.1349 2.6241 -0.0025 35 1 6.6683 1.7185 -0.5479 36 1 6.5013 0.9965 -2.1663 37 1 5.1564 1.9273 -1.4638 38 1 5.6940 -1.0957 -2.7962 39 1 7.4342 -1.2346 -2.4657 40 1 6.8954 -3.3790 -3.3046 41 1 5.3201 -3.4094 -2.4790 42 1 7.2097 -4.8830 -1.4961 43 1 6.2804 -3.8851 -0.3801 44 1 11.1237 -0.9587 -0.7342 45 1 9.1488 -2.0960 0.8245 46 1 7.5097 -2.6705 1.2320 47 1 8.2589 -0.6792 -0.8792 48 1 7.5141 -0.3236 0.6836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948734480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:36 Heat of formation + Delta-G solvation = 3.188942 kcal Electronic energy + Delta-G solvation = -30163.756058 eV Core-core repulsion = 26220.585180 eV Total energy + Delta-G solvation = -3943.170878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.13825 -40.82726 -39.17350 -38.91903 -36.75872 -34.88241 -33.78357 -32.68189 -32.28859 -31.72265 -28.45233 -28.09438 -27.88065 -26.22715 -24.93920 -24.74474 -23.93367 -21.87252 -21.29238 -20.19137 -19.29306 -18.63220 -18.35543 -18.01770 -17.33190 -17.03110 -16.85269 -16.23185 -16.13261 -15.72863 -15.54699 -15.37586 -15.10039 -15.00143 -14.75975 -14.37361 -14.31974 -14.01458 -13.59094 -13.55944 -13.48094 -13.20514 -13.05598 -12.75853 -12.68303 -12.59019 -12.52568 -12.18523 -12.06519 -11.81780 -11.69645 -11.64181 -11.21718 -11.16557 -11.04750 -10.90169 -10.52649 -10.41668 -9.70663 -9.46019 -8.66875 -7.80625 -5.20745 -0.28482 0.21953 1.50397 1.53393 1.58892 1.73155 1.96657 2.09228 2.56576 2.73769 3.21282 3.32449 3.55141 3.59872 3.80841 3.96328 3.97945 4.14045 4.15994 4.23144 4.28045 4.38127 4.38890 4.49380 4.52457 4.54794 4.62548 4.68614 4.69942 4.80336 4.85071 4.90087 4.91922 5.05141 5.09720 5.17709 5.21219 5.32186 5.34648 5.42477 5.48938 5.60373 5.69536 5.72428 6.06407 6.19024 6.41881 6.44413 6.74222 7.14549 7.18968 7.90479 8.43303 9.24436 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.003102 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.343303 B = 9024.048117 C = 9789.451426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.314 6.314 3 C 0.346 3.654 4 N -0.557 5.557 5 C 0.161 3.839 6 C -0.202 4.202 7 C -0.020 4.020 8 C -0.230 4.230 9 C 0.558 3.442 10 O -0.573 6.573 11 N -0.598 5.598 12 C 0.058 3.942 13 C 0.156 3.844 14 H 0.073 0.927 15 C -0.100 4.100 16 C -0.133 4.133 17 C 0.151 3.849 18 N -0.600 5.600 19 C -0.264 4.264 20 H 0.062 0.938 21 C -0.037 4.037 22 N -0.913 5.913 23 Si 0.958 3.042 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.171 3.829 28 C -0.114 4.114 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.205 0.795 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.249 0.751 45 H 0.067 0.933 46 H 0.007 0.993 47 H 0.086 0.914 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 15.286 -0.804 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.167 3.833 4 N -0.281 5.281 5 C 0.005 3.995 6 C -0.222 4.222 7 C -0.045 4.045 8 C -0.236 4.236 9 C 0.347 3.653 10 O -0.453 6.453 11 N -0.329 5.329 12 C -0.084 4.084 13 C 0.053 3.947 14 H 0.091 0.909 15 C -0.138 4.138 16 C -0.174 4.174 17 C 0.023 3.977 18 N -0.322 5.322 19 C -0.394 4.394 20 H 0.079 0.921 21 C -0.234 4.234 22 N -0.559 5.559 23 Si 0.787 3.213 24 H -0.208 1.208 25 H -0.219 1.219 26 H -0.214 1.214 27 C 0.047 3.953 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.221 0.779 33 H 0.205 0.795 34 H 0.193 0.807 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.026 0.974 47 H 0.104 0.896 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.270 14.486 -0.488 22.546 hybrid contribution 1.765 -0.541 -0.102 1.849 sum -15.504 13.945 -0.590 20.861 Atomic orbital electron populations 1.23097 0.75707 1.04387 1.02711 1.86405 1.24504 1.24765 1.86332 1.19967 0.88273 0.85487 0.89544 1.67525 1.40430 0.99103 1.21068 1.23469 0.94366 0.93658 0.88013 1.22423 0.94177 1.00847 1.04752 1.22490 1.03007 0.89525 0.89511 1.19922 0.91513 0.95352 1.16860 1.18366 0.80865 0.87720 0.78340 1.90750 1.71787 1.37293 1.45510 1.47925 1.19288 1.11233 1.54478 1.22578 1.00412 0.86151 0.99218 1.20234 0.92123 0.85270 0.97067 0.90855 1.21545 1.00587 0.96726 0.94974 1.22689 0.99553 0.95186 1.00016 1.20496 0.87824 0.95326 0.94023 1.44329 1.01329 1.49975 1.36561 1.19362 0.87288 0.99844 1.32855 0.92073 1.25456 1.00985 0.95081 1.01841 1.70079 1.29337 1.02583 1.53879 0.85500 0.80980 0.77065 0.77726 1.20779 1.21852 1.21443 1.19995 0.98825 0.88356 0.88106 1.21046 0.94555 0.98808 1.00976 0.91838 0.91542 0.87118 0.77871 0.79505 0.80689 0.90548 0.91054 0.87701 0.92530 0.92785 0.92958 0.91809 0.94877 0.95210 0.94142 0.91462 0.97448 0.89606 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.38 113.37 1.18 1.93 16 2 O -0.31 -9.88 9.08 -69.83 -0.63 -10.52 16 3 C 0.35 9.83 7.48 85.13 0.64 10.47 16 4 N -0.56 -12.21 9.21 -308.00 -2.84 -15.05 16 5 C 0.16 2.15 11.17 84.71 0.95 3.10 16 6 C -0.20 -2.30 10.09 22.32 0.23 -2.07 16 7 C -0.02 -0.36 7.53 22.72 0.17 -0.19 16 8 C -0.23 -6.45 5.47 -19.91 -0.11 -6.56 16 9 C 0.56 20.07 7.31 86.69 0.63 20.70 16 10 O -0.57 -25.67 15.26 13.38 0.20 -25.47 16 11 N -0.60 -19.92 2.63 -832.48 -2.19 -22.11 16 12 C 0.06 1.37 8.17 127.77 1.04 2.42 16 13 C 0.16 6.17 2.30 43.91 0.10 6.27 16 14 H 0.07 3.31 5.12 -2.39 -0.01 3.30 16 15 C -0.10 -3.86 4.34 30.22 0.13 -3.73 16 16 C -0.13 -5.22 6.40 31.80 0.20 -5.01 16 17 C 0.15 6.70 5.17 87.59 0.45 7.15 16 18 N -0.60 -30.20 2.60 -707.83 -1.84 -32.05 16 19 C -0.26 -14.29 9.63 84.03 0.81 -13.48 16 20 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 21 C -0.04 -2.00 4.91 84.86 0.42 -1.58 16 22 N -0.91 -49.45 9.44 21.65 0.20 -49.25 16 23 Si 0.96 43.97 29.60 68.60 2.03 46.00 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 27 C 0.17 8.35 5.24 83.58 0.44 8.79 16 28 C -0.11 -4.96 4.19 28.36 0.12 -4.84 16 29 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 30 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 33 H 0.19 0.54 8.06 -2.91 -0.02 0.51 16 34 H 0.18 2.50 5.05 -2.91 -0.01 2.49 16 35 H 0.08 1.61 7.54 -2.39 -0.02 1.59 16 36 H 0.07 1.77 7.20 -2.39 -0.02 1.75 16 37 H 0.11 1.89 4.63 -2.39 -0.01 1.87 16 38 H 0.06 1.96 7.81 -2.39 -0.02 1.95 16 39 H 0.05 2.35 6.84 -2.38 -0.02 2.34 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.03 1.44 7.99 -2.39 -0.02 1.42 16 43 H 0.03 1.30 6.90 -2.39 -0.02 1.29 16 44 H 0.25 13.21 8.31 -92.70 -0.77 12.44 16 45 H 0.07 3.61 6.04 -2.39 -0.01 3.60 16 46 H 0.01 0.36 8.13 -2.38 -0.02 0.34 16 47 H 0.09 4.11 5.32 -2.38 -0.01 4.10 16 48 H 0.03 1.39 8.02 -2.38 -0.02 1.37 16 Total: -1.00 -72.39 368.45 3.30 -69.09 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.97 Total: 15.99 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 7.40 Total: 23.35 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -6.67 Total: -118.45 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.43 Total: -35.98 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.39 3.30 -69.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948734480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.278 kcal (2) G-P(sol) polarization free energy of solvation -72.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds