Wall clock time and date at job start Tue Mar 31 2020 17:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99906 * 2 1 4 4 O 1.21691 * 119.99727 * 175.67699 * 3 2 1 5 5 C 1.46714 * 120.00334 * 355.66771 * 3 2 1 6 6 O 1.35350 * 126.64592 * 6.47969 * 5 3 2 7 7 C 1.33662 * 107.68699 * 180.02562 * 6 5 3 8 8 N 1.30621 * 109.15302 * 359.97438 * 7 6 5 9 9 C 1.33688 * 108.99692 * 359.73395 * 8 7 6 10 10 C 1.50696 * 126.27283 * 180.27017 * 9 8 7 11 11 C 1.53001 * 117.50278 * 8.93634 * 10 9 8 12 12 C 1.53000 * 117.50086 * 300.27463 * 10 9 8 13 13 C 1.46496 * 119.99511 * 179.97438 * 2 1 3 14 14 H 1.09000 * 108.31505 * 182.38750 * 13 2 1 15 15 C 1.52568 * 108.51335 * 64.77476 * 13 2 1 16 16 C 1.50877 * 109.36162 * 153.73167 * 15 13 2 17 17 C 1.53945 * 110.09782 * 91.88303 * 16 15 13 18 18 N 1.47609 * 112.14072 * 319.43458 * 17 16 15 19 19 C 1.36938 * 118.64115 * 137.84121 * 18 17 16 20 20 H 1.07997 * 120.00373 * 209.94861 * 19 18 17 21 21 C 1.38814 * 119.99916 * 29.95675 * 19 18 17 22 22 N 1.31615 * 119.99963 * 9.96347 * 21 19 18 23 23 Si 1.86807 * 120.00014 * 189.96037 * 21 19 18 24 24 H 1.48498 * 109.46787 * 59.99912 * 23 21 19 25 25 H 1.48501 * 109.46893 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46899 * 300.00028 * 23 21 19 27 27 C 1.44571 * 122.71283 * 317.86799 * 18 17 16 28 28 C 1.47088 * 108.51758 * 300.00118 * 13 2 1 29 29 H 1.09003 * 109.47546 * 275.66520 * 1 2 3 30 30 H 1.09008 * 109.46833 * 35.66370 * 1 2 3 31 31 H 1.08993 * 109.47173 * 155.66004 * 1 2 3 32 32 H 1.08004 * 125.42034 * 180.02562 * 7 6 5 33 33 H 1.09007 * 115.54940 * 154.60939 * 10 9 8 34 34 H 1.09000 * 117.49581 * 359.97438 * 11 10 9 35 35 H 1.08994 * 117.50230 * 145.01776 * 11 10 9 36 36 H 1.08998 * 117.49984 * 214.97914 * 12 10 9 37 37 H 1.09003 * 117.49559 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.48590 * 273.69498 * 15 13 2 39 39 H 1.08999 * 109.48930 * 33.75898 * 15 13 2 40 40 H 1.08999 * 109.36707 * 331.69320 * 16 15 13 41 41 H 1.08999 * 109.26524 * 212.00724 * 16 15 13 42 42 H 1.08996 * 108.94973 * 198.75173 * 17 16 15 43 43 H 1.09003 * 108.94788 * 80.11925 * 17 16 15 44 44 H 0.97005 * 120.00275 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.45114 * 330.68795 * 27 18 17 46 46 H 1.09004 * 109.45341 * 210.76283 * 27 18 17 47 47 H 1.08996 * 109.33022 * 304.32188 * 28 13 2 48 48 H 1.09001 * 109.32576 * 63.79642 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3532 1.1687 0.0794 5 6 1.4085 2.4360 -0.0960 6 8 0.0652 2.5990 -0.0674 7 6 -0.1878 3.9064 -0.1832 8 7 0.9421 4.5545 -0.2813 9 6 1.9517 3.6799 -0.2251 10 6 3.4207 4.0084 -0.2959 11 6 3.8183 5.4846 -0.2355 12 6 3.9265 4.7158 -1.5548 13 6 2.1974 -1.2688 0.0006 14 1 3.2641 -1.0485 0.0436 15 6 1.9056 -1.9971 -1.3079 16 6 3.0582 -2.9129 -1.6384 17 6 2.8029 -4.3155 -1.0574 18 7 2.2085 -4.2587 0.2925 19 6 1.1924 -5.1240 0.5992 20 1 0.4363 -4.8370 1.3150 21 6 1.1343 -6.3700 -0.0097 22 7 2.1504 -6.7998 -0.7274 23 14 -0.3861 -7.4370 0.1895 24 1 -1.5688 -6.7188 -0.3494 25 1 -0.1989 -8.7090 -0.5537 26 1 -0.5992 -7.7311 1.6294 27 6 2.6545 -3.3270 1.3040 28 6 1.8270 -2.0214 1.2088 29 1 -0.3634 0.1014 1.0226 30 1 -0.3633 0.8350 -0.5992 31 1 -0.3633 -0.9363 -0.4235 32 1 -1.1700 4.3554 -0.1932 33 1 4.0870 3.2879 0.1786 34 1 3.0173 6.2182 -0.1449 35 1 4.7462 5.7353 0.2784 36 1 4.9257 4.4610 -1.9081 37 1 3.1968 4.9432 -2.3319 38 1 0.9934 -2.5844 -1.2015 39 1 1.7783 -1.2690 -2.1089 40 1 3.9759 -2.5070 -1.2128 41 1 3.1623 -2.9837 -2.7211 42 1 3.7488 -4.8545 -1.0052 43 1 2.1260 -4.8551 -1.7198 44 1 2.1097 -7.6704 -1.1533 45 1 3.7093 -3.1002 1.1489 46 1 2.5202 -3.7706 2.2906 47 1 2.0185 -1.4078 2.0890 48 1 0.7662 -2.2688 1.1685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948775625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:05 Heat of formation + Delta-G solvation = 49.685077 kcal Electronic energy + Delta-G solvation = -29760.142638 eV Core-core repulsion = 25818.987984 eV Total energy + Delta-G solvation = -3941.154654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.69657 -40.05483 -37.90981 -37.45991 -35.48974 -34.60020 -32.95319 -31.69585 -30.93649 -29.96179 -26.99223 -26.19116 -24.94710 -24.00043 -23.72691 -23.02121 -22.47913 -21.09331 -20.25775 -19.40258 -19.21668 -17.58186 -17.20018 -16.94225 -16.75127 -16.11511 -15.62448 -15.14651 -15.02380 -14.86472 -14.27261 -13.95427 -13.89073 -13.55815 -13.39339 -13.06856 -12.87296 -12.51519 -12.34269 -12.09682 -12.05192 -11.89838 -11.65325 -11.40195 -11.21996 -11.01204 -10.86009 -10.77810 -10.66528 -10.59943 -10.47900 -10.26195 -10.18900 -9.93470 -9.77298 -9.71407 -9.61893 -9.07027 -8.53306 -8.41967 -6.62604 -5.78559 -3.27636 0.63803 2.15781 2.25503 2.97839 3.06985 3.35543 3.41649 3.41735 3.68085 3.81563 4.26683 4.43804 4.47507 4.77689 4.87043 5.07594 5.15379 5.19454 5.25703 5.32149 5.35393 5.43543 5.48724 5.51156 5.61966 5.64394 5.74651 5.81755 5.97242 5.98567 6.00384 6.00871 6.06993 6.16170 6.30672 6.43551 6.52386 6.61961 6.71885 6.78091 6.82943 6.88926 6.94897 7.25010 7.42353 7.45993 7.73339 7.81329 8.01747 8.48567 9.24443 9.89469 10.36266 11.28272 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002820 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.797622 B = 9926.505938 C =10585.399535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.597 5.597 3 C 0.601 3.399 4 O -0.518 6.518 5 C -0.096 4.096 6 O -0.183 6.183 7 C 0.189 3.811 8 N -0.491 5.491 9 C 0.103 3.897 10 C -0.091 4.091 11 C -0.162 4.162 12 C -0.159 4.159 13 C 0.156 3.844 14 H 0.091 0.909 15 C -0.110 4.110 16 C -0.142 4.142 17 C 0.179 3.821 18 N -0.590 5.590 19 C -0.260 4.260 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.905 5.905 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.163 3.837 28 C -0.154 4.154 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.254 0.746 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.254 0.746 45 H 0.035 0.965 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 21.346 -0.676 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.328 5.328 3 C 0.387 3.613 4 O -0.396 6.396 5 C -0.151 4.151 6 O -0.069 6.069 7 C -0.036 4.036 8 N -0.219 5.219 9 C -0.020 4.020 10 C -0.110 4.110 11 C -0.199 4.199 12 C -0.197 4.197 13 C 0.055 3.945 14 H 0.109 0.891 15 C -0.148 4.148 16 C -0.181 4.181 17 C 0.054 3.946 18 N -0.311 5.311 19 C -0.390 4.390 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.034 3.966 28 C -0.195 4.195 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.270 0.730 33 H 0.158 0.842 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.309 21.720 -0.797 21.857 hybrid contribution -1.382 -1.178 0.130 1.820 sum -3.690 20.542 -0.666 20.882 Atomic orbital electron populations 1.21968 0.79324 1.03576 1.02118 1.48272 1.07547 1.06096 1.70904 1.16482 0.86127 0.80950 0.77737 1.90828 1.11889 1.85465 1.51432 1.23018 0.80000 0.97550 1.14575 1.84756 1.24271 1.29222 1.68698 1.28325 1.00313 0.77542 0.97454 1.70224 0.97986 1.34595 1.19142 1.20992 0.95284 0.87218 0.98513 1.20576 0.88448 0.97295 1.04640 1.22989 1.03198 0.93337 1.00416 1.22964 1.02537 1.03011 0.91163 1.20311 0.97093 0.80568 0.96490 0.89137 1.21292 1.01235 0.97694 0.94575 1.22002 0.96874 0.99235 0.99994 1.21030 0.97917 0.89854 0.85778 1.43641 1.40860 1.38837 1.07758 1.19126 1.02022 0.93812 1.24050 0.91963 1.25145 0.97136 0.96469 1.00390 1.70016 1.29111 1.19382 1.36351 0.86388 0.82837 0.79829 0.77741 1.21076 1.21656 1.20904 1.20565 0.94515 0.88335 0.93170 1.21880 1.02911 0.99335 0.95413 0.92423 0.90679 0.89797 0.73039 0.84164 0.87899 0.88287 0.87979 0.88802 0.90321 0.93465 0.93346 0.92630 0.95617 0.90760 0.93584 0.94686 0.93105 0.93094 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.65 59.85 0.52 1.41 16 2 N -0.60 -8.91 2.59 -179.02 -0.46 -9.37 16 3 C 0.60 9.36 7.64 -12.84 -0.10 9.26 16 4 O -0.52 -9.19 14.15 5.20 0.07 -9.12 16 5 C -0.10 -1.30 6.80 -36.84 -0.25 -1.55 16 6 O -0.18 -1.96 7.47 4.41 0.03 -1.93 16 7 C 0.19 1.58 13.21 52.25 0.69 2.27 16 8 N -0.49 -5.58 10.89 -10.88 -0.12 -5.70 16 9 C 0.10 1.34 6.67 -82.47 -0.55 0.79 16 10 C -0.09 -1.10 5.66 -91.77 -0.52 -1.62 16 11 C -0.16 -1.57 10.16 -26.69 -0.27 -1.84 16 12 C -0.16 -1.61 10.24 -26.69 -0.27 -1.89 16 13 C 0.16 2.62 1.95 -70.99 -0.14 2.48 16 14 H 0.09 1.66 6.03 -51.93 -0.31 1.35 16 15 C -0.11 -1.91 4.38 -28.02 -0.12 -2.03 16 16 C -0.14 -2.65 5.71 -27.30 -0.16 -2.81 16 17 C 0.18 4.15 4.64 -2.94 -0.01 4.13 16 18 N -0.59 -14.01 2.26 -172.09 -0.39 -14.40 16 19 C -0.26 -6.80 9.42 -15.06 -0.14 -6.94 16 20 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 21 C 0.01 0.20 4.99 -17.43 -0.09 0.11 16 22 N -0.90 -25.55 10.90 55.49 0.61 -24.95 16 23 Si 0.90 21.15 29.57 -169.99 -5.03 16.12 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.16 3.33 5.65 -4.09 -0.02 3.31 16 28 C -0.15 -2.69 4.88 -28.59 -0.14 -2.83 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.82 5.32 -51.92 -0.28 0.54 16 31 H 0.08 1.05 7.20 -51.93 -0.37 0.67 16 32 H 0.25 0.69 8.06 -52.48 -0.42 0.27 16 33 H 0.14 1.87 6.57 -51.92 -0.34 1.53 16 34 H 0.10 1.02 7.92 -51.93 -0.41 0.61 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.51 7.20 -51.92 -0.37 1.14 16 39 H 0.05 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.05 0.89 7.32 -51.93 -0.38 0.51 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.65 8.00 -51.93 -0.42 0.24 16 43 H 0.07 1.91 6.42 -51.93 -0.33 1.58 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 46 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.06 1.18 7.58 -51.93 -0.39 0.79 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -30.79 376.51 -8.56 -39.35 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.37 Total: 2.07 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.58 Total: 2.25 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.37 Total: -54.42 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.11 Total: -11.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.79 -8.56 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948775625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.034 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds