Wall clock time and date at job start Tue Mar 31 2020 17:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99906 * 2 1 4 4 O 1.21691 * 119.99727 * 175.67699 * 3 2 1 5 5 C 1.46714 * 120.00334 * 355.66771 * 3 2 1 6 6 O 1.35350 * 126.64592 * 6.47969 * 5 3 2 7 7 C 1.33662 * 107.68699 * 180.02562 * 6 5 3 8 8 N 1.30621 * 109.15302 * 359.97438 * 7 6 5 9 9 C 1.33688 * 108.99692 * 359.73395 * 8 7 6 10 10 C 1.50696 * 126.27283 * 180.27017 * 9 8 7 11 11 C 1.53001 * 117.50278 * 8.93634 * 10 9 8 12 12 C 1.53000 * 117.50086 * 300.27463 * 10 9 8 13 13 C 1.46496 * 119.99511 * 179.97438 * 2 1 3 14 14 H 1.09000 * 108.31505 * 182.38750 * 13 2 1 15 15 C 1.52568 * 108.51335 * 64.77476 * 13 2 1 16 16 C 1.50877 * 109.36162 * 153.73167 * 15 13 2 17 17 C 1.53945 * 110.09782 * 91.88303 * 16 15 13 18 18 N 1.47609 * 112.14072 * 319.43458 * 17 16 15 19 19 C 1.36938 * 118.64115 * 137.84121 * 18 17 16 20 20 H 1.07997 * 120.00373 * 209.94861 * 19 18 17 21 21 C 1.38814 * 119.99916 * 29.95675 * 19 18 17 22 22 N 1.31615 * 119.99963 * 9.96347 * 21 19 18 23 23 Si 1.86807 * 120.00014 * 189.96037 * 21 19 18 24 24 H 1.48498 * 109.46787 * 59.99912 * 23 21 19 25 25 H 1.48501 * 109.46893 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46899 * 300.00028 * 23 21 19 27 27 C 1.44571 * 122.71283 * 317.86799 * 18 17 16 28 28 C 1.47088 * 108.51758 * 300.00118 * 13 2 1 29 29 H 1.09003 * 109.47546 * 275.66520 * 1 2 3 30 30 H 1.09008 * 109.46833 * 35.66370 * 1 2 3 31 31 H 1.08993 * 109.47173 * 155.66004 * 1 2 3 32 32 H 1.08004 * 125.42034 * 180.02562 * 7 6 5 33 33 H 1.09007 * 115.54940 * 154.60939 * 10 9 8 34 34 H 1.09000 * 117.49581 * 359.97438 * 11 10 9 35 35 H 1.08994 * 117.50230 * 145.01776 * 11 10 9 36 36 H 1.08998 * 117.49984 * 214.97914 * 12 10 9 37 37 H 1.09003 * 117.49559 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.48590 * 273.69498 * 15 13 2 39 39 H 1.08999 * 109.48930 * 33.75898 * 15 13 2 40 40 H 1.08999 * 109.36707 * 331.69320 * 16 15 13 41 41 H 1.08999 * 109.26524 * 212.00724 * 16 15 13 42 42 H 1.08996 * 108.94973 * 198.75173 * 17 16 15 43 43 H 1.09003 * 108.94788 * 80.11925 * 17 16 15 44 44 H 0.97005 * 120.00275 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.45114 * 330.68795 * 27 18 17 46 46 H 1.09004 * 109.45341 * 210.76283 * 27 18 17 47 47 H 1.08996 * 109.33022 * 304.32188 * 28 13 2 48 48 H 1.09001 * 109.32576 * 63.79642 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3532 1.1687 0.0794 5 6 1.4085 2.4360 -0.0960 6 8 0.0652 2.5990 -0.0674 7 6 -0.1878 3.9064 -0.1832 8 7 0.9421 4.5545 -0.2813 9 6 1.9517 3.6799 -0.2251 10 6 3.4207 4.0084 -0.2959 11 6 3.8183 5.4846 -0.2355 12 6 3.9265 4.7158 -1.5548 13 6 2.1974 -1.2688 0.0006 14 1 3.2641 -1.0485 0.0436 15 6 1.9056 -1.9971 -1.3079 16 6 3.0582 -2.9129 -1.6384 17 6 2.8029 -4.3155 -1.0574 18 7 2.2085 -4.2587 0.2925 19 6 1.1924 -5.1240 0.5992 20 1 0.4363 -4.8370 1.3150 21 6 1.1343 -6.3700 -0.0097 22 7 2.1504 -6.7998 -0.7274 23 14 -0.3861 -7.4370 0.1895 24 1 -1.5688 -6.7188 -0.3494 25 1 -0.1989 -8.7090 -0.5537 26 1 -0.5992 -7.7311 1.6294 27 6 2.6545 -3.3270 1.3040 28 6 1.8270 -2.0214 1.2088 29 1 -0.3634 0.1014 1.0226 30 1 -0.3633 0.8350 -0.5992 31 1 -0.3633 -0.9363 -0.4235 32 1 -1.1700 4.3554 -0.1932 33 1 4.0870 3.2879 0.1786 34 1 3.0173 6.2182 -0.1449 35 1 4.7462 5.7353 0.2784 36 1 4.9257 4.4610 -1.9081 37 1 3.1968 4.9432 -2.3319 38 1 0.9934 -2.5844 -1.2015 39 1 1.7783 -1.2690 -2.1089 40 1 3.9759 -2.5070 -1.2128 41 1 3.1623 -2.9837 -2.7211 42 1 3.7488 -4.8545 -1.0052 43 1 2.1260 -4.8551 -1.7198 44 1 2.1097 -7.6704 -1.1533 45 1 3.7093 -3.1002 1.1489 46 1 2.5202 -3.7706 2.2906 47 1 2.0185 -1.4078 2.0890 48 1 0.7662 -2.2688 1.1685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948775625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:04 Heat of formation + Delta-G solvation = 31.041845 kcal Electronic energy + Delta-G solvation = -29760.951070 eV Core-core repulsion = 25818.987984 eV Total energy + Delta-G solvation = -3941.963086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.52115 -41.30514 -39.27363 -38.42919 -36.89793 -35.50354 -34.55694 -33.34336 -32.40358 -31.18279 -28.17680 -27.80879 -26.29102 -25.43891 -24.79473 -24.34323 -23.27061 -22.12831 -21.31670 -21.04058 -20.62832 -18.63152 -18.54823 -18.09370 -17.81231 -17.39995 -16.98671 -16.44950 -16.20223 -15.83410 -15.67734 -15.44904 -15.26233 -15.01801 -14.72493 -14.37024 -14.16685 -14.03335 -13.65148 -13.32234 -13.16138 -13.00848 -12.90423 -12.85473 -12.68603 -12.41439 -12.39766 -12.14777 -11.99412 -11.85428 -11.82372 -11.59689 -11.54300 -11.45085 -11.40099 -11.37915 -11.00308 -10.44523 -10.05317 -9.65098 -8.58996 -7.81888 -5.33561 -0.26292 1.35360 1.36629 1.49292 1.50067 1.56844 1.89235 2.01148 2.53487 2.92624 3.05959 3.33133 3.40650 3.50436 3.67731 3.79475 3.94713 4.06370 4.10003 4.12648 4.27004 4.33661 4.39596 4.42407 4.43947 4.49115 4.61328 4.67686 4.72979 4.73828 4.84429 4.92603 4.96007 4.98606 5.12169 5.13172 5.15391 5.21970 5.23701 5.27855 5.30006 5.43092 5.49961 5.58388 5.70534 5.83563 6.17223 6.45694 6.51519 6.87056 7.22446 7.96192 8.37833 9.22911 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002820 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.797622 B = 9926.505938 C =10585.399535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.599 3.401 4 O -0.550 6.550 5 C -0.126 4.126 6 O -0.183 6.183 7 C 0.222 3.778 8 N -0.517 5.517 9 C 0.106 3.894 10 C -0.119 4.119 11 C -0.145 4.145 12 C -0.153 4.153 13 C 0.164 3.836 14 H 0.076 0.924 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.192 3.808 18 N -0.602 5.602 19 C -0.262 4.262 20 H 0.067 0.933 21 C -0.046 4.046 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.278 1.278 27 C 0.160 3.840 28 C -0.135 4.135 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.309 0.691 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.071 0.929 42 H -0.007 1.007 43 H 0.044 0.956 44 H 0.248 0.752 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 23.960 -0.543 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.329 5.329 3 C 0.387 3.613 4 O -0.431 6.431 5 C -0.181 4.181 6 O -0.070 6.070 7 C -0.002 4.002 8 N -0.246 5.246 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.182 4.182 12 C -0.190 4.190 13 C 0.062 3.938 14 H 0.094 0.906 15 C -0.136 4.136 16 C -0.169 4.169 17 C 0.067 3.933 18 N -0.324 5.324 19 C -0.393 4.393 20 H 0.084 0.916 21 C -0.242 4.242 22 N -0.583 5.583 23 Si 0.793 3.207 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.203 1.203 27 C 0.032 3.968 28 C -0.176 4.176 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.324 0.676 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.011 0.989 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.362 24.377 -0.643 24.773 hybrid contribution -0.771 -1.859 0.126 2.017 sum -5.134 22.518 -0.517 23.101 Atomic orbital electron populations 1.22097 0.77523 1.04096 1.03116 1.48194 1.08546 1.05190 1.70971 1.16702 0.85952 0.81655 0.76993 1.90803 1.13315 1.86122 1.52829 1.22475 0.81121 0.96592 1.17911 1.84726 1.22787 1.30435 1.69069 1.29638 1.01477 0.76376 0.92702 1.70274 0.98507 1.34707 1.21082 1.21181 0.95928 0.87458 0.97189 1.20573 0.88287 0.98401 1.06477 1.23042 1.03690 0.91620 0.99827 1.23021 1.02886 1.02211 0.90882 1.19997 0.96612 0.81450 0.95766 0.90596 1.21147 0.99574 0.97392 0.95493 1.21847 0.97737 0.96688 1.00665 1.20753 0.95307 0.91854 0.85426 1.43816 1.40672 1.39240 1.08655 1.19437 1.02402 0.94048 1.23375 0.91572 1.25866 0.99725 0.97841 1.00754 1.70193 1.30964 1.19445 1.37695 0.85391 0.79869 0.77811 0.77624 1.20151 1.22420 1.20343 1.20676 0.95162 0.88968 0.92017 1.21607 1.01833 0.97727 0.96408 0.91399 0.89039 0.90166 0.67634 0.86083 0.87868 0.86677 0.86953 0.88876 0.91928 0.91920 0.92869 0.91074 0.98888 0.93746 0.94272 0.94522 0.93642 0.91813 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.64 8.65 127.77 1.10 2.74 16 2 N -0.60 -17.18 2.59 -838.50 -2.17 -19.35 16 3 C 0.60 18.30 7.64 86.46 0.66 18.96 16 4 O -0.55 -19.75 14.15 -4.32 -0.06 -19.82 16 5 C -0.13 -3.22 6.80 24.04 0.16 -3.05 16 6 O -0.18 -3.37 7.47 -7.14 -0.05 -3.43 16 7 C 0.22 2.84 13.21 130.42 1.72 4.56 16 8 N -0.52 -10.37 10.89 -303.12 -3.30 -13.68 16 9 C 0.11 2.61 6.67 41.83 0.28 2.89 16 10 C -0.12 -2.81 5.66 -11.54 -0.07 -2.88 16 11 C -0.14 -2.59 10.16 30.62 0.31 -2.27 16 12 C -0.15 -2.91 10.24 30.62 0.31 -2.60 16 13 C 0.16 5.40 1.95 43.01 0.08 5.48 16 14 H 0.08 2.78 6.03 -2.39 -0.01 2.76 16 15 C -0.10 -3.34 4.38 29.76 0.13 -3.21 16 16 C -0.13 -4.89 5.71 30.22 0.17 -4.71 16 17 C 0.19 9.17 4.64 86.49 0.40 9.57 16 18 N -0.60 -29.11 2.26 -698.37 -1.58 -30.70 16 19 C -0.26 -13.84 9.42 84.03 0.79 -13.04 16 20 H 0.07 3.38 7.85 -2.91 -0.02 3.36 16 21 C -0.05 -2.53 4.99 84.86 0.42 -2.11 16 22 N -0.94 -54.60 10.90 21.65 0.24 -54.37 16 23 Si 0.96 43.88 29.57 68.60 2.03 45.91 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.16 6.54 5.65 87.38 0.49 7.04 16 28 C -0.13 -4.61 4.88 29.39 0.14 -4.47 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.75 5.32 -2.38 -0.01 1.74 16 31 H 0.08 1.86 7.20 -2.39 -0.02 1.84 16 32 H 0.31 -0.16 8.06 -2.91 -0.02 -0.18 16 33 H 0.12 3.33 6.57 -2.38 -0.02 3.31 16 34 H 0.10 1.85 7.92 -2.39 -0.02 1.83 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 2.37 7.20 -2.38 -0.02 2.35 16 39 H 0.06 1.96 8.05 -2.39 -0.02 1.94 16 40 H 0.05 1.95 7.32 -2.39 -0.02 1.94 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H -0.01 -0.37 8.00 -2.39 -0.02 -0.39 16 43 H 0.04 2.37 6.42 -2.39 -0.02 2.36 16 44 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 45 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 46 H 0.05 1.89 7.99 -2.38 -0.02 1.87 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.06 2.19 7.58 -2.39 -0.02 2.17 16 Total: -1.00 -68.98 376.51 3.19 -65.78 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.96 Total: 16.76 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 7.13 Total: 12.88 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -6.81 Total: -118.09 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.11 Total: -23.24 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.98 3.19 -65.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948775625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.824 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds