Wall clock time and date at job start Tue Mar 31 2020 17:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99673 * 2 1 4 4 O 1.21580 * 119.99956 * 183.71967 * 3 2 1 5 5 C 1.47508 * 120.00102 * 3.72358 * 3 2 1 6 6 C 1.36823 * 126.94409 * 172.70411 * 5 3 2 7 7 C 1.41262 * 103.84752 * 180.14699 * 6 5 3 8 8 C 1.50700 * 126.70792 * 179.88872 * 7 6 5 9 9 C 1.53001 * 117.49471 * 15.96292 * 8 7 6 10 10 C 1.52996 * 117.49900 * 84.62253 * 8 7 6 11 11 N 1.30137 * 106.58871 * 359.62760 * 7 6 5 12 12 O 1.20886 * 111.97902 * 0.24075 * 11 7 6 13 13 C 1.46494 * 120.00302 * 180.02562 * 2 1 3 14 14 H 1.09000 * 110.21360 * 181.93486 * 13 2 1 15 15 C 1.50132 * 110.24675 * 304.01823 * 13 2 1 16 16 C 1.54843 * 110.81220 * 216.65719 * 15 13 2 17 17 C 1.54900 * 110.14372 * 321.12937 * 16 15 13 18 18 N 1.43428 * 116.08309 * 318.64281 * 17 16 15 19 19 C 1.36929 * 120.53796 * 271.59212 * 18 17 16 20 20 H 1.08003 * 120.00181 * 326.35978 * 19 18 17 21 21 C 1.38813 * 120.00251 * 146.36484 * 19 18 17 22 22 N 1.31618 * 119.99943 * 3.33477 * 21 19 18 23 23 Si 1.86803 * 120.00241 * 183.34010 * 21 19 18 24 24 H 1.48500 * 109.47150 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46978 * 119.99666 * 23 21 19 26 26 H 1.48496 * 109.46873 * 239.99553 * 23 21 19 27 27 C 1.50167 * 118.92328 * 91.56323 * 18 17 16 28 28 C 1.46247 * 107.53659 * 289.59260 * 27 18 17 29 29 H 1.09005 * 109.47081 * 83.94905 * 1 2 3 30 30 H 1.09006 * 109.46995 * 203.94446 * 1 2 3 31 31 H 1.08995 * 109.47427 * 323.94569 * 1 2 3 32 32 H 1.08001 * 128.07617 * 0.02562 * 6 5 3 33 33 H 1.09005 * 115.55039 * 230.29829 * 8 7 6 34 34 H 1.09005 * 117.49293 * 215.00289 * 9 8 7 35 35 H 1.08998 * 117.50140 * 0.02562 * 9 8 7 36 36 H 1.09005 * 117.50044 * 359.97438 * 10 8 7 37 37 H 1.08997 * 117.49922 * 144.97521 * 10 8 7 38 38 H 1.09000 * 109.20540 * 336.99677 * 15 13 2 39 39 H 1.08997 * 109.21034 * 96.31160 * 15 13 2 40 40 H 1.09007 * 109.35909 * 200.92491 * 16 15 13 41 41 H 1.09003 * 109.24994 * 81.27059 * 16 15 13 42 42 H 1.09000 * 108.15572 * 196.92715 * 17 16 15 43 43 H 1.08999 * 108.15549 * 80.36415 * 17 16 15 44 44 H 0.97001 * 119.99975 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.84628 * 170.08590 * 27 18 17 46 46 H 1.09002 * 109.84640 * 49.10158 * 27 18 17 47 47 H 1.08995 * 108.51679 * 297.16970 * 28 27 18 48 48 H 1.08996 * 108.52161 * 179.65405 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3527 1.1684 -0.0683 5 6 1.4035 2.4433 0.0830 6 6 1.9398 3.6932 0.2326 7 6 0.8125 4.5441 0.2568 8 6 0.8188 6.0437 0.4055 9 6 2.1446 6.7710 0.1724 10 6 1.0202 6.8784 -0.8608 11 7 -0.2324 3.7805 0.1199 12 8 0.0694 2.6140 0.0218 13 6 2.1975 -1.2686 -0.0006 14 1 3.2711 -1.0836 0.0341 15 6 1.7749 -2.1131 1.1666 16 6 2.9797 -2.8955 1.7444 17 6 3.8921 -3.3943 0.5963 18 7 3.2225 -3.9134 -0.5611 19 6 2.8798 -5.2372 -0.6313 20 1 3.5098 -5.9834 -0.1700 21 6 1.7226 -5.6203 -1.2954 22 7 0.9895 -4.7188 -1.9136 23 14 1.2057 -7.4154 -1.3116 24 1 2.1931 -8.2217 -0.5500 25 1 -0.1336 -7.5505 -0.6844 26 1 1.1469 -7.9008 -2.7138 27 6 2.9029 -2.9813 -1.6942 28 6 1.8418 -2.0831 -1.2401 29 1 -0.3633 0.1083 -1.0220 30 1 -0.3633 -0.9393 0.4171 31 1 -0.3634 0.8308 0.6048 32 1 2.9817 3.9654 0.3151 33 1 0.1534 6.4431 1.1710 34 1 2.3513 7.6490 0.7846 35 1 3.0120 6.1650 -0.0889 36 1 1.1486 6.3428 -1.8015 37 1 0.4871 7.8266 -0.9287 38 1 1.3593 -1.4702 1.9425 39 1 1.0116 -2.8196 0.8403 40 1 2.6156 -3.7506 2.3140 41 1 3.5515 -2.2406 2.4019 42 1 4.5403 -4.1758 0.9927 43 1 4.5239 -2.5645 0.2797 44 1 0.1807 -4.9865 -2.3774 45 1 2.5604 -3.5519 -2.5574 46 1 3.7885 -2.4036 -1.9593 47 1 0.9551 -2.6778 -1.0210 48 1 1.6012 -1.3942 -2.0498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948824580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:50 Heat of formation + Delta-G solvation = 94.386657 kcal Electronic energy + Delta-G solvation = -29639.072619 eV Core-core repulsion = 25699.856370 eV Total energy + Delta-G solvation = -3939.216248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.16946 -39.98146 -37.95754 -37.73623 -35.39418 -33.52696 -32.99228 -32.05330 -30.99740 -30.49445 -26.92188 -26.29444 -24.93597 -24.80885 -23.32568 -23.10082 -22.55416 -21.95198 -19.89481 -19.61369 -18.68508 -17.99333 -17.64688 -16.81668 -16.50730 -16.18565 -15.50960 -15.19224 -14.82876 -14.79066 -14.25487 -13.90333 -13.75708 -13.71874 -13.26053 -13.01440 -12.84739 -12.50141 -12.12999 -12.02849 -11.95787 -11.92870 -11.76628 -11.44327 -11.31247 -11.13598 -10.88272 -10.84568 -10.77347 -10.30350 -10.18662 -10.09089 -10.06196 -9.97448 -9.82230 -9.79101 -9.43917 -9.34378 -8.52003 -8.27576 -6.56933 -5.80503 -3.32913 0.72627 1.80134 2.53862 3.01685 3.17612 3.27511 3.34823 3.43521 3.44902 3.70705 4.23991 4.40174 4.47538 4.54743 4.68409 4.77091 4.98483 5.14557 5.23455 5.30814 5.32472 5.43047 5.45468 5.53843 5.60647 5.63065 5.67517 5.71097 5.75507 5.81272 5.96138 6.16581 6.24907 6.30096 6.42824 6.52179 6.63411 6.86094 6.91160 6.93045 7.03748 7.09655 7.18395 7.44559 7.66771 7.77739 7.86682 7.94653 8.11359 8.50615 9.21113 9.83648 10.41672 11.25059 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.002626 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.534439 B =10661.183311 C =11037.530790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.584 5.584 3 C 0.595 3.405 4 O -0.517 6.517 5 C -0.068 4.068 6 C -0.156 4.156 7 C 0.041 3.959 8 C -0.088 4.088 9 C -0.163 4.163 10 C -0.163 4.163 11 N -0.348 5.348 12 O 0.120 5.880 13 C 0.139 3.861 14 H 0.101 0.899 15 C -0.113 4.113 16 C -0.139 4.139 17 C 0.155 3.845 18 N -0.590 5.590 19 C -0.246 4.246 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.165 3.835 28 C -0.129 4.129 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.181 0.819 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.033 0.967 43 H 0.028 0.972 44 H 0.252 0.748 45 H 0.102 0.898 46 H 0.003 0.997 47 H 0.104 0.896 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.413 19.440 4.481 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.315 5.315 3 C 0.379 3.621 4 O -0.394 6.394 5 C -0.134 4.134 6 C -0.179 4.179 7 C -0.116 4.116 8 C -0.106 4.106 9 C -0.200 4.200 10 C -0.200 4.200 11 N -0.049 5.049 12 O 0.049 5.951 13 C 0.038 3.962 14 H 0.119 0.881 15 C -0.151 4.151 16 C -0.180 4.180 17 C 0.026 3.974 18 N -0.312 5.312 19 C -0.375 4.375 20 H 0.082 0.918 21 C -0.189 4.189 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.042 3.958 28 C -0.169 4.169 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.198 0.802 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.120 0.880 46 H 0.021 0.979 47 H 0.122 0.878 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.226 19.574 4.272 20.158 hybrid contribution 0.070 -0.828 0.160 0.846 sum -2.156 18.746 4.432 19.383 Atomic orbital electron populations 1.22000 0.79022 1.03622 1.02619 1.48077 1.07574 1.05942 1.69865 1.16667 0.86142 0.81008 0.78289 1.90849 1.11944 1.85639 1.50971 1.24426 0.83789 0.97646 1.07525 1.22741 1.01596 0.89892 1.03650 1.22617 0.88540 0.96814 1.03635 1.20108 1.02870 0.85330 1.02327 1.23080 0.92058 1.02347 1.02548 1.23054 1.02229 1.01209 0.93557 1.73678 1.24396 0.89919 1.16904 1.85192 1.22603 1.20922 1.66411 1.20857 0.96917 0.80182 0.98231 0.88143 1.21768 0.99690 0.97757 0.95933 1.22810 0.97386 0.98450 0.99368 1.20446 0.93055 0.96034 0.87877 1.44101 1.69366 1.05933 1.11801 1.19221 1.02454 0.83103 1.32765 0.91786 1.25228 0.95905 0.97427 1.00349 1.69863 1.16248 1.31601 1.37160 0.86243 0.78300 0.85111 0.77273 1.20410 1.21663 1.21820 1.20191 0.92328 0.90316 0.92991 1.21372 1.04474 0.97030 0.93980 0.91787 0.89577 0.90940 0.80162 0.85733 0.87627 0.87996 0.88372 0.87780 0.94066 0.90341 0.92627 0.93671 0.94894 0.95336 0.93746 0.88007 0.97885 0.87811 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 8.95 59.85 0.54 1.48 16 2 N -0.58 -9.45 2.64 -177.11 -0.47 -9.91 16 3 C 0.59 9.74 7.67 -12.48 -0.10 9.64 16 4 O -0.52 -9.83 16.28 5.30 0.09 -9.74 16 5 C -0.07 -0.94 6.88 -36.32 -0.25 -1.19 16 6 C -0.16 -1.88 10.27 -38.95 -0.40 -2.28 16 7 C 0.04 0.48 6.94 -82.16 -0.57 -0.09 16 8 C -0.09 -0.74 6.33 -91.77 -0.58 -1.32 16 9 C -0.16 -1.04 10.05 -26.69 -0.27 -1.31 16 10 C -0.16 -1.14 10.24 -26.69 -0.27 -1.41 16 11 N -0.35 -4.61 12.04 33.52 0.40 -4.21 16 12 O 0.12 1.61 8.01 15.55 0.12 1.74 16 13 C 0.14 2.58 2.30 -69.61 -0.16 2.42 16 14 H 0.10 2.04 5.13 -51.93 -0.27 1.78 16 15 C -0.11 -2.07 4.24 -27.19 -0.12 -2.19 16 16 C -0.14 -2.58 6.41 -24.76 -0.16 -2.74 16 17 C 0.15 3.23 5.17 -4.66 -0.02 3.21 16 18 N -0.59 -14.13 2.60 -175.08 -0.45 -14.58 16 19 C -0.25 -6.40 9.59 -15.06 -0.14 -6.55 16 20 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 21 C 0.01 0.23 5.33 -17.43 -0.09 0.13 16 22 N -0.90 -23.72 8.85 55.49 0.49 -23.23 16 23 Si 0.90 20.88 29.56 -169.99 -5.02 15.85 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.17 3.82 5.23 -5.20 -0.03 3.80 16 28 C -0.13 -2.68 4.21 -30.19 -0.13 -2.81 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.16 7.15 -51.93 -0.37 0.79 16 31 H 0.07 0.87 5.45 -51.93 -0.28 0.59 16 32 H 0.18 1.85 7.61 -52.49 -0.40 1.45 16 33 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.66 7.33 -51.93 -0.38 0.28 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.68 7.82 -51.93 -0.41 0.28 16 39 H 0.08 1.63 6.83 -51.93 -0.35 1.28 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.68 8.00 -51.93 -0.42 0.27 16 43 H 0.03 0.58 6.90 -51.93 -0.36 0.22 16 44 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 45 H 0.10 2.62 6.09 -51.93 -0.32 2.31 16 46 H 0.00 0.07 8.12 -51.93 -0.42 -0.35 16 47 H 0.10 2.39 5.22 -51.93 -0.27 2.12 16 48 H 0.03 0.63 8.02 -51.93 -0.42 0.21 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -28.35 373.87 -9.12 -37.48 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.16 Total: 2.19 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.75 Total: -1.22 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.03 Total: -51.93 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.21 Total: -8.01 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.35 -9.12 -37.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948824580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.862 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds