Wall clock time and date at job start Tue Mar 31 2020 17:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99673 * 2 1 4 4 O 1.21580 * 119.99956 * 183.71967 * 3 2 1 5 5 C 1.47508 * 120.00102 * 3.72358 * 3 2 1 6 6 C 1.36823 * 126.94409 * 172.70411 * 5 3 2 7 7 C 1.41262 * 103.84752 * 180.14699 * 6 5 3 8 8 C 1.50700 * 126.70792 * 179.88872 * 7 6 5 9 9 C 1.53001 * 117.49471 * 15.96292 * 8 7 6 10 10 C 1.52996 * 117.49900 * 84.62253 * 8 7 6 11 11 N 1.30137 * 106.58871 * 359.62760 * 7 6 5 12 12 O 1.20886 * 111.97902 * 0.24075 * 11 7 6 13 13 C 1.46494 * 120.00302 * 180.02562 * 2 1 3 14 14 H 1.09000 * 110.21360 * 181.93486 * 13 2 1 15 15 C 1.50132 * 110.24675 * 304.01823 * 13 2 1 16 16 C 1.54843 * 110.81220 * 216.65719 * 15 13 2 17 17 C 1.54900 * 110.14372 * 321.12937 * 16 15 13 18 18 N 1.43428 * 116.08309 * 318.64281 * 17 16 15 19 19 C 1.36929 * 120.53796 * 271.59212 * 18 17 16 20 20 H 1.08003 * 120.00181 * 326.35978 * 19 18 17 21 21 C 1.38813 * 120.00251 * 146.36484 * 19 18 17 22 22 N 1.31618 * 119.99943 * 3.33477 * 21 19 18 23 23 Si 1.86803 * 120.00241 * 183.34010 * 21 19 18 24 24 H 1.48500 * 109.47150 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46978 * 119.99666 * 23 21 19 26 26 H 1.48496 * 109.46873 * 239.99553 * 23 21 19 27 27 C 1.50167 * 118.92328 * 91.56323 * 18 17 16 28 28 C 1.46247 * 107.53659 * 289.59260 * 27 18 17 29 29 H 1.09005 * 109.47081 * 83.94905 * 1 2 3 30 30 H 1.09006 * 109.46995 * 203.94446 * 1 2 3 31 31 H 1.08995 * 109.47427 * 323.94569 * 1 2 3 32 32 H 1.08001 * 128.07617 * 0.02562 * 6 5 3 33 33 H 1.09005 * 115.55039 * 230.29829 * 8 7 6 34 34 H 1.09005 * 117.49293 * 215.00289 * 9 8 7 35 35 H 1.08998 * 117.50140 * 0.02562 * 9 8 7 36 36 H 1.09005 * 117.50044 * 359.97438 * 10 8 7 37 37 H 1.08997 * 117.49922 * 144.97521 * 10 8 7 38 38 H 1.09000 * 109.20540 * 336.99677 * 15 13 2 39 39 H 1.08997 * 109.21034 * 96.31160 * 15 13 2 40 40 H 1.09007 * 109.35909 * 200.92491 * 16 15 13 41 41 H 1.09003 * 109.24994 * 81.27059 * 16 15 13 42 42 H 1.09000 * 108.15572 * 196.92715 * 17 16 15 43 43 H 1.08999 * 108.15549 * 80.36415 * 17 16 15 44 44 H 0.97001 * 119.99975 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.84628 * 170.08590 * 27 18 17 46 46 H 1.09002 * 109.84640 * 49.10158 * 27 18 17 47 47 H 1.08995 * 108.51679 * 297.16970 * 28 27 18 48 48 H 1.08996 * 108.52161 * 179.65405 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3527 1.1684 -0.0683 5 6 1.4035 2.4433 0.0830 6 6 1.9398 3.6932 0.2326 7 6 0.8125 4.5441 0.2568 8 6 0.8188 6.0437 0.4055 9 6 2.1446 6.7710 0.1724 10 6 1.0202 6.8784 -0.8608 11 7 -0.2324 3.7805 0.1199 12 8 0.0694 2.6140 0.0218 13 6 2.1975 -1.2686 -0.0006 14 1 3.2711 -1.0836 0.0341 15 6 1.7749 -2.1131 1.1666 16 6 2.9797 -2.8955 1.7444 17 6 3.8921 -3.3943 0.5963 18 7 3.2225 -3.9134 -0.5611 19 6 2.8798 -5.2372 -0.6313 20 1 3.5098 -5.9834 -0.1700 21 6 1.7226 -5.6203 -1.2954 22 7 0.9895 -4.7188 -1.9136 23 14 1.2057 -7.4154 -1.3116 24 1 2.1931 -8.2217 -0.5500 25 1 -0.1336 -7.5505 -0.6844 26 1 1.1469 -7.9008 -2.7138 27 6 2.9029 -2.9813 -1.6942 28 6 1.8418 -2.0831 -1.2401 29 1 -0.3633 0.1083 -1.0220 30 1 -0.3633 -0.9393 0.4171 31 1 -0.3634 0.8308 0.6048 32 1 2.9817 3.9654 0.3151 33 1 0.1534 6.4431 1.1710 34 1 2.3513 7.6490 0.7846 35 1 3.0120 6.1650 -0.0889 36 1 1.1486 6.3428 -1.8015 37 1 0.4871 7.8266 -0.9287 38 1 1.3593 -1.4702 1.9425 39 1 1.0116 -2.8196 0.8403 40 1 2.6156 -3.7506 2.3140 41 1 3.5515 -2.2406 2.4019 42 1 4.5403 -4.1758 0.9927 43 1 4.5239 -2.5645 0.2797 44 1 0.1807 -4.9865 -2.3774 45 1 2.5604 -3.5519 -2.5574 46 1 3.7885 -2.4036 -1.9593 47 1 0.9551 -2.6778 -1.0210 48 1 1.6012 -1.3942 -2.0498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948824580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:49 Heat of formation + Delta-G solvation = 80.817808 kcal Electronic energy + Delta-G solvation = -29639.661008 eV Core-core repulsion = 25699.856370 eV Total energy + Delta-G solvation = -3939.804638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.14832 -41.36703 -39.32697 -38.57260 -36.88389 -34.68695 -34.37797 -33.40206 -32.59264 -32.18704 -28.19757 -27.96177 -26.28102 -25.72791 -24.91588 -24.49248 -23.29010 -22.86593 -21.53096 -20.77971 -20.15267 -19.01188 -18.77660 -18.61462 -17.73407 -17.29958 -16.89924 -16.43052 -16.28527 -15.74536 -15.49575 -15.41931 -15.33262 -14.97548 -14.85112 -14.47334 -14.22548 -13.58888 -13.45770 -13.30989 -13.16879 -13.11020 -12.95103 -12.86741 -12.68662 -12.53485 -12.41701 -12.19783 -12.01364 -11.81344 -11.78713 -11.65299 -11.40773 -11.32619 -11.20568 -11.02291 -10.98396 -10.71860 -10.40523 -9.72857 -8.47759 -7.78850 -5.33356 -0.35382 0.89191 1.38755 1.48694 1.52653 1.60268 1.78985 2.01383 2.54999 2.62797 2.95214 3.28020 3.35666 3.64275 3.70611 3.79053 3.94406 3.97407 4.02998 4.10937 4.13121 4.18297 4.33558 4.39092 4.53754 4.56935 4.65171 4.71220 4.72818 4.80562 4.85076 4.89324 4.96564 4.98907 4.99631 5.08535 5.21588 5.21629 5.25047 5.35203 5.36857 5.50730 5.60703 5.69026 5.75173 6.11020 6.19063 6.53065 6.71555 6.98289 7.23874 7.91320 8.47162 9.24307 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.002626 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.534439 B =10661.183311 C =11037.530790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.586 5.586 3 C 0.597 3.403 4 O -0.548 6.548 5 C -0.084 4.084 6 C -0.144 4.144 7 C 0.049 3.951 8 C -0.108 4.108 9 C -0.149 4.149 10 C -0.161 4.161 11 N -0.363 5.363 12 O 0.115 5.885 13 C 0.154 3.846 14 H 0.087 0.913 15 C -0.103 4.103 16 C -0.132 4.132 17 C 0.151 3.849 18 N -0.603 5.603 19 C -0.260 4.260 20 H 0.058 0.942 21 C -0.031 4.031 22 N -0.915 5.915 23 Si 0.958 3.042 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.295 1.295 27 C 0.169 3.831 28 C -0.113 4.113 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.198 0.802 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.249 0.751 45 H 0.072 0.928 46 H 0.006 0.994 47 H 0.083 0.917 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 21.465 5.612 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.316 5.316 3 C 0.383 3.617 4 O -0.427 6.427 5 C -0.149 4.149 6 C -0.167 4.167 7 C -0.109 4.109 8 C -0.127 4.127 9 C -0.186 4.186 10 C -0.198 4.198 11 N -0.066 5.066 12 O 0.044 5.956 13 C 0.051 3.949 14 H 0.105 0.895 15 C -0.142 4.142 16 C -0.173 4.173 17 C 0.023 3.977 18 N -0.325 5.325 19 C -0.390 4.390 20 H 0.076 0.924 21 C -0.228 4.228 22 N -0.560 5.560 23 Si 0.787 3.213 24 H -0.200 1.200 25 H -0.218 1.218 26 H -0.222 1.222 27 C 0.045 3.955 28 C -0.153 4.153 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.215 0.785 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.024 0.976 47 H 0.101 0.899 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.385 21.600 5.415 22.396 hybrid contribution 0.154 -1.373 -0.231 1.400 sum -2.230 20.228 5.185 21.000 Atomic orbital electron populations 1.22116 0.77351 1.04324 1.03312 1.48040 1.08523 1.05208 1.69847 1.16842 0.85884 0.81579 0.77360 1.90825 1.13268 1.86260 1.52351 1.24025 0.84330 0.97023 1.09569 1.23050 1.02586 0.89220 1.01796 1.23097 0.87666 0.98220 1.01910 1.20319 1.05056 0.83500 1.03794 1.23215 0.91101 1.02427 1.01896 1.23140 1.02694 1.01403 0.92607 1.73670 1.25168 0.90031 1.17723 1.85169 1.22173 1.21226 1.66994 1.20456 0.96377 0.81004 0.97017 0.89520 1.21616 0.98894 0.97337 0.96305 1.22717 0.97190 0.98802 0.98584 1.20535 0.93314 0.96130 0.87744 1.44191 1.69786 1.05552 1.12985 1.19359 1.02635 0.84086 1.32949 0.92398 1.25788 0.96070 1.00520 1.00401 1.70014 1.16120 1.32626 1.37262 0.85355 0.77634 0.81521 0.76745 1.19968 1.21841 1.22209 1.20051 0.92998 0.90272 0.92198 1.21098 1.02621 0.96539 0.95028 0.91391 0.89637 0.89179 0.78509 0.84635 0.85420 0.88081 0.89462 0.85910 0.91903 0.92931 0.92959 0.91131 0.94986 0.94871 0.94171 0.90939 0.97572 0.89879 0.95180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.86 8.95 127.77 1.14 3.00 16 2 N -0.59 -18.62 2.64 -832.53 -2.20 -20.82 16 3 C 0.60 19.14 7.67 86.69 0.66 19.80 16 4 O -0.55 -20.56 16.28 -3.97 -0.06 -20.63 16 5 C -0.08 -2.24 6.88 24.38 0.17 -2.07 16 6 C -0.14 -3.23 10.27 22.68 0.23 -3.00 16 7 C 0.05 1.03 6.94 43.55 0.30 1.34 16 8 C -0.11 -1.55 6.33 -11.54 -0.07 -1.62 16 9 C -0.15 -1.45 10.05 30.62 0.31 -1.15 16 10 C -0.16 -1.83 10.24 30.62 0.31 -1.52 16 11 N -0.36 -9.12 12.04 -48.85 -0.59 -9.71 16 12 O 0.11 2.94 8.01 65.84 0.53 3.47 16 13 C 0.15 5.66 2.30 43.91 0.10 5.76 16 14 H 0.09 3.50 5.13 -2.39 -0.01 3.49 16 15 C -0.10 -3.71 4.24 30.30 0.13 -3.58 16 16 C -0.13 -4.75 6.41 31.87 0.20 -4.55 16 17 C 0.15 6.26 5.17 87.60 0.45 6.71 16 18 N -0.60 -29.25 2.60 -707.84 -1.84 -31.09 16 19 C -0.26 -13.74 9.59 84.04 0.81 -12.93 16 20 H 0.06 3.08 7.83 -2.91 -0.02 3.05 16 21 C -0.03 -1.65 5.33 84.86 0.45 -1.20 16 22 N -0.91 -48.98 8.85 21.65 0.19 -48.79 16 23 Si 0.96 43.34 29.56 68.60 2.03 45.37 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 27 C 0.17 7.99 5.23 83.58 0.44 8.43 16 28 C -0.11 -4.80 4.21 28.36 0.12 -4.68 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.08 2.25 7.15 -2.38 -0.02 2.24 16 31 H 0.09 2.05 5.45 -2.39 -0.01 2.04 16 32 H 0.20 3.63 7.61 -2.91 -0.02 3.60 16 33 H 0.14 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.10 1.02 7.33 -2.39 -0.02 1.00 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.98 7.82 -2.39 -0.02 1.96 16 39 H 0.05 2.19 6.83 -2.39 -0.02 2.17 16 40 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.03 1.32 8.00 -2.39 -0.02 1.30 16 43 H 0.03 1.33 6.90 -2.39 -0.02 1.31 16 44 H 0.25 13.06 8.31 -92.71 -0.77 12.28 16 45 H 0.07 3.87 6.09 -2.39 -0.01 3.85 16 46 H 0.01 0.29 8.12 -2.39 -0.02 0.27 16 47 H 0.08 3.92 5.22 -2.39 -0.01 3.91 16 48 H 0.03 1.24 8.02 -2.39 -0.02 1.22 16 Total: -1.00 -61.03 373.87 4.79 -56.23 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.97 Total: 17.22 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.76 Total: 8.75 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -4.43 Total: -110.41 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.46 Total: -17.16 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -61.03 4.79 -56.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948824580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.050 kcal (2) G-P(sol) polarization free energy of solvation -61.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds