Wall clock time and date at job start Tue Mar 31 2020 17:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00075 * 2 1 4 4 O 1.21613 * 120.00402 * 183.35655 * 3 2 1 5 5 C 1.47428 * 119.99749 * 3.34948 * 3 2 1 6 6 C 1.36090 * 126.44370 * 173.58907 * 5 3 2 7 7 O 1.34259 * 106.94486 * 180.02562 * 6 5 3 8 8 C 1.34052 * 108.23027 * 359.97438 * 7 6 5 9 9 C 1.50698 * 125.38038 * 180.02562 * 8 7 6 10 10 C 1.52997 * 117.50069 * 8.71334 * 9 8 7 11 11 C 1.52998 * 117.50218 * 300.04914 * 9 8 7 12 12 N 1.29942 * 109.23874 * 0.02562 * 8 7 6 13 13 C 1.46501 * 120.00153 * 179.97438 * 2 1 3 14 14 H 1.09007 * 110.21259 * 181.92957 * 13 2 1 15 15 C 1.50123 * 110.25191 * 304.02190 * 13 2 1 16 16 C 1.54846 * 110.81633 * 216.65770 * 15 13 2 17 17 C 1.54909 * 110.13844 * 321.12921 * 16 15 13 18 18 N 1.43436 * 116.07913 * 318.64323 * 17 16 15 19 19 C 1.36934 * 120.53513 * 271.59059 * 18 17 16 20 20 H 1.08000 * 119.99849 * 326.33954 * 19 18 17 21 21 C 1.38814 * 120.00122 * 146.34228 * 19 18 17 22 22 N 1.31623 * 119.99711 * 3.28844 * 21 19 18 23 23 Si 1.86797 * 120.00037 * 183.28595 * 21 19 18 24 24 H 1.48500 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47050 * 120.00055 * 23 21 19 26 26 H 1.48498 * 109.47492 * 240.00000 * 23 21 19 27 27 C 1.50164 * 118.92529 * 91.57031 * 18 17 16 28 28 C 1.46244 * 107.53058 * 289.58323 * 27 18 17 29 29 H 1.08998 * 109.46905 * 84.04036 * 1 2 3 30 30 H 1.09000 * 109.46847 * 204.03106 * 1 2 3 31 31 H 1.08993 * 109.47355 * 324.03711 * 1 2 3 32 32 H 1.08000 * 126.53068 * 0.02562 * 6 5 3 33 33 H 1.09007 * 115.54742 * 154.37964 * 9 8 7 34 34 H 1.09000 * 117.49546 * 359.97438 * 10 9 8 35 35 H 1.08993 * 117.50268 * 145.01556 * 10 9 8 36 36 H 1.09000 * 117.50057 * 214.97759 * 11 9 8 37 37 H 1.09009 * 117.49543 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.20443 * 336.99347 * 15 13 2 39 39 H 1.08999 * 109.21225 * 96.30724 * 15 13 2 40 40 H 1.08996 * 109.35770 * 200.92719 * 16 15 13 41 41 H 1.08999 * 109.25094 * 81.26602 * 16 15 13 42 42 H 1.08999 * 108.15720 * 196.92489 * 17 16 15 43 43 H 1.08996 * 108.15516 * 80.35977 * 17 16 15 44 44 H 0.96997 * 119.99332 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.84644 * 170.07956 * 27 18 17 46 46 H 1.08999 * 109.84584 * 49.09093 * 27 18 17 47 47 H 1.08995 * 108.52681 * 297.17261 * 28 27 18 48 48 H 1.08999 * 108.51863 * 179.64964 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1681 -0.0617 5 6 1.4036 2.4428 0.0746 6 6 1.9479 3.6832 0.2058 7 8 0.9288 4.5568 0.2334 8 6 -0.2163 3.8690 0.1212 9 6 -1.5979 4.4708 0.1082 10 6 -1.7039 5.9949 0.0269 11 6 -2.0306 5.2733 1.3368 12 7 0.0532 2.6015 0.0255 13 6 2.1975 -1.2687 0.0006 14 1 3.2712 -1.0837 0.0349 15 6 1.7749 -2.1122 1.1683 16 6 2.9797 -2.8942 1.7469 17 6 3.8921 -3.3939 0.5991 18 7 3.2224 -3.9138 -0.5579 19 6 2.8797 -5.2378 -0.6271 20 1 3.5100 -5.9835 -0.1656 21 6 1.7222 -5.6214 -1.2904 22 7 0.9883 -4.7201 -1.9081 23 14 1.2062 -7.4166 -1.3064 24 1 2.1939 -8.2223 -0.5445 25 1 -0.1326 -7.5524 -0.6783 26 1 1.1467 -7.9021 -2.7085 27 6 2.9029 -2.9827 -1.6918 28 6 1.8418 -2.0842 -1.2384 29 1 -0.3633 0.1067 -1.0221 30 1 -0.3633 -0.9386 0.4185 31 1 -0.3634 0.8317 0.6035 32 1 2.9994 3.9198 0.2745 33 1 -2.3609 3.8851 -0.4048 34 1 -0.7743 6.5624 -0.0167 35 1 -2.5367 6.4120 -0.5391 36 1 -3.0783 5.2161 1.6320 37 1 -1.3157 5.3664 2.1544 38 1 1.3594 -1.4687 1.9437 39 1 1.0116 -2.8190 0.8426 40 1 2.6156 -3.7488 2.3171 41 1 3.5515 -2.2387 2.4037 42 1 4.5404 -4.1750 0.9961 43 1 4.5239 -2.5643 0.2818 44 1 0.1793 -4.9881 -2.3713 45 1 2.5604 -3.5541 -2.5546 46 1 3.7885 -2.4053 -1.9573 47 1 0.9550 -2.6786 -1.0188 48 1 1.6013 -1.3959 -2.0486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948836272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:15 Heat of formation + Delta-G solvation = 61.127281 kcal Electronic energy + Delta-G solvation = -29656.364970 eV Core-core repulsion = 25715.706486 eV Total energy + Delta-G solvation = -3940.658483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.62144 -39.74167 -37.71926 -37.49184 -35.34204 -34.80811 -32.65761 -31.14726 -30.55099 -30.23702 -26.60453 -26.20447 -24.77161 -24.52275 -23.13313 -23.01906 -22.82970 -21.32916 -19.83385 -19.42276 -18.50077 -17.61878 -17.08939 -16.80530 -16.60960 -15.98138 -15.79408 -15.05736 -15.01537 -14.71700 -13.98536 -13.77460 -13.69263 -13.57494 -13.12502 -12.86009 -12.75698 -12.62956 -12.26623 -12.08065 -11.92093 -11.78317 -11.65921 -11.25486 -11.09261 -11.08064 -11.05698 -10.82506 -10.71300 -10.47074 -10.19872 -10.06048 -9.90507 -9.87645 -9.62298 -9.35153 -9.26629 -9.07752 -8.41863 -8.05852 -6.51002 -5.75348 -3.27831 0.98388 1.83785 2.31348 3.17510 3.27580 3.37714 3.46002 3.46517 3.47678 3.59044 4.24094 4.38097 4.49015 4.51505 4.69806 4.80837 5.12736 5.21414 5.37480 5.40840 5.44841 5.50854 5.57098 5.57919 5.61043 5.66659 5.71460 5.84673 5.94342 6.05186 6.25886 6.36889 6.37493 6.42497 6.59519 6.64830 6.73057 6.95237 6.99100 7.01253 7.15542 7.19307 7.27112 7.40026 7.64892 7.79936 7.85187 8.02333 8.39645 8.55732 9.26208 9.88838 10.47385 11.30123 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.002777 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.898272 B =10079.428160 C =10728.436472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.582 5.582 3 C 0.591 3.409 4 O -0.544 6.544 5 C -0.057 4.057 6 C 0.004 3.996 7 O -0.198 6.198 8 C 0.219 3.781 9 C -0.071 4.071 10 C -0.163 4.163 11 C -0.158 4.158 12 N -0.447 5.447 13 C 0.139 3.861 14 H 0.097 0.903 15 C -0.111 4.111 16 C -0.138 4.138 17 C 0.156 3.844 18 N -0.590 5.590 19 C -0.245 4.245 20 H 0.064 0.936 21 C 0.008 3.992 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.166 3.834 28 C -0.128 4.128 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.231 0.769 33 H 0.148 0.852 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.032 0.968 43 H 0.028 0.972 44 H 0.252 0.748 45 H 0.101 0.899 46 H 0.002 0.998 47 H 0.102 0.898 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.248 20.957 5.242 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.311 5.311 3 C 0.378 3.622 4 O -0.423 6.423 5 C -0.177 4.177 6 C -0.069 4.069 7 O -0.084 6.084 8 C 0.011 3.989 9 C -0.090 4.090 10 C -0.201 4.201 11 C -0.196 4.196 12 N -0.177 5.177 13 C 0.038 3.962 14 H 0.115 0.885 15 C -0.149 4.149 16 C -0.180 4.180 17 C 0.027 3.973 18 N -0.312 5.312 19 C -0.375 4.375 20 H 0.082 0.918 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.043 3.957 28 C -0.167 4.167 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.247 0.753 33 H 0.166 0.834 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.020 0.980 47 H 0.120 0.880 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.205 20.393 5.020 21.899 hybrid contribution -0.056 -0.502 0.073 0.511 sum -6.261 19.891 5.094 21.466 Atomic orbital electron populations 1.22084 0.78793 1.03253 1.02475 1.47924 1.07731 1.05610 1.69843 1.16821 0.86041 0.81917 0.77471 1.90795 1.12658 1.86761 1.52077 1.21964 0.89475 0.95803 1.10456 1.25247 0.93312 0.86943 1.01404 1.84315 1.15439 1.39448 1.69222 1.25258 0.87841 0.85584 1.00231 1.20275 0.87864 0.94836 1.06064 1.23130 1.04449 0.91908 1.00582 1.23157 1.03304 1.01504 0.91624 1.71002 1.13461 1.15617 1.17606 1.20763 0.96906 0.80710 0.97866 0.88468 1.21744 0.99469 0.97701 0.96033 1.22809 0.97469 0.98381 0.99331 1.20439 0.93046 0.95953 0.87896 1.44104 1.69357 1.05922 1.11812 1.19221 1.02429 0.83123 1.32760 0.91812 1.25240 0.95915 0.97387 1.00414 1.69883 1.16168 1.31553 1.37182 0.86245 0.78287 0.85171 0.77238 1.20420 1.21691 1.21835 1.20185 0.92345 0.90318 0.92896 1.21341 1.04275 0.96962 0.94130 0.92866 0.91386 0.88899 0.75282 0.83401 0.87811 0.87160 0.87040 0.88134 0.94256 0.90549 0.92749 0.93768 0.94973 0.95360 0.93791 0.88135 0.97971 0.87980 0.95307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 8.88 59.85 0.53 1.76 16 2 N -0.58 -10.63 2.64 -177.14 -0.47 -11.10 16 3 C 0.59 10.73 7.67 -12.52 -0.10 10.63 16 4 O -0.54 -11.14 16.26 5.27 0.09 -11.05 16 5 C -0.06 -0.85 6.66 -83.02 -0.55 -1.40 16 6 C 0.00 0.05 11.95 29.96 0.36 0.41 16 7 O -0.20 -2.16 10.40 6.50 0.07 -2.10 16 8 C 0.22 2.42 7.80 -13.08 -0.10 2.32 16 9 C -0.07 -0.52 6.33 -91.78 -0.58 -1.11 16 10 C -0.16 -0.85 10.16 -26.69 -0.27 -1.12 16 11 C -0.16 -0.86 10.24 -26.69 -0.27 -1.13 16 12 N -0.45 -6.11 7.86 -7.65 -0.06 -6.18 16 13 C 0.14 2.82 2.30 -69.60 -0.16 2.66 16 14 H 0.10 2.15 5.12 -51.92 -0.27 1.88 16 15 C -0.11 -2.21 4.24 -27.19 -0.12 -2.33 16 16 C -0.14 -2.74 6.41 -24.75 -0.16 -2.90 16 17 C 0.16 3.42 5.17 -4.66 -0.02 3.39 16 18 N -0.59 -14.74 2.59 -175.08 -0.45 -15.20 16 19 C -0.25 -6.61 9.59 -15.06 -0.14 -6.75 16 20 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 21 C 0.01 0.22 5.33 -17.43 -0.09 0.13 16 22 N -0.90 -24.54 8.85 55.49 0.49 -24.04 16 23 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.17 4.05 5.23 -5.20 -0.03 4.02 16 28 C -0.13 -2.86 4.21 -30.18 -0.13 -2.98 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.09 7.15 -51.93 -0.37 0.72 16 31 H 0.09 1.38 5.31 -51.93 -0.28 1.10 16 32 H 0.23 2.05 8.06 -52.49 -0.42 1.62 16 33 H 0.15 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16 35 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.04 0.72 7.82 -51.93 -0.41 0.32 16 39 H 0.08 1.71 6.83 -51.93 -0.35 1.36 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.69 8.00 -51.93 -0.42 0.28 16 43 H 0.03 0.60 6.89 -51.93 -0.36 0.25 16 44 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 45 H 0.10 2.70 6.10 -51.93 -0.32 2.38 16 46 H 0.00 0.05 8.12 -51.93 -0.42 -0.37 16 47 H 0.10 2.53 5.21 -51.93 -0.27 2.25 16 48 H 0.03 0.64 8.02 -51.93 -0.42 0.22 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -30.65 375.34 -8.75 -39.41 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.21 Total: 2.65 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.84 Total: 5.60 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.49 Total: -56.52 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.15 Total: -13.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.65 -8.75 -39.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948836272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.536 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds