Wall clock time and date at job start Tue Mar 31 2020 17:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00075 * 2 1 4 4 O 1.21613 * 120.00402 * 183.35655 * 3 2 1 5 5 C 1.47428 * 119.99749 * 3.34948 * 3 2 1 6 6 C 1.36090 * 126.44370 * 173.58907 * 5 3 2 7 7 O 1.34259 * 106.94486 * 180.02562 * 6 5 3 8 8 C 1.34052 * 108.23027 * 359.97438 * 7 6 5 9 9 C 1.50698 * 125.38038 * 180.02562 * 8 7 6 10 10 C 1.52997 * 117.50069 * 8.71334 * 9 8 7 11 11 C 1.52998 * 117.50218 * 300.04914 * 9 8 7 12 12 N 1.29942 * 109.23874 * 0.02562 * 8 7 6 13 13 C 1.46501 * 120.00153 * 179.97438 * 2 1 3 14 14 H 1.09007 * 110.21259 * 181.92957 * 13 2 1 15 15 C 1.50123 * 110.25191 * 304.02190 * 13 2 1 16 16 C 1.54846 * 110.81633 * 216.65770 * 15 13 2 17 17 C 1.54909 * 110.13844 * 321.12921 * 16 15 13 18 18 N 1.43436 * 116.07913 * 318.64323 * 17 16 15 19 19 C 1.36934 * 120.53513 * 271.59059 * 18 17 16 20 20 H 1.08000 * 119.99849 * 326.33954 * 19 18 17 21 21 C 1.38814 * 120.00122 * 146.34228 * 19 18 17 22 22 N 1.31623 * 119.99711 * 3.28844 * 21 19 18 23 23 Si 1.86797 * 120.00037 * 183.28595 * 21 19 18 24 24 H 1.48500 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47050 * 120.00055 * 23 21 19 26 26 H 1.48498 * 109.47492 * 240.00000 * 23 21 19 27 27 C 1.50164 * 118.92529 * 91.57031 * 18 17 16 28 28 C 1.46244 * 107.53058 * 289.58323 * 27 18 17 29 29 H 1.08998 * 109.46905 * 84.04036 * 1 2 3 30 30 H 1.09000 * 109.46847 * 204.03106 * 1 2 3 31 31 H 1.08993 * 109.47355 * 324.03711 * 1 2 3 32 32 H 1.08000 * 126.53068 * 0.02562 * 6 5 3 33 33 H 1.09007 * 115.54742 * 154.37964 * 9 8 7 34 34 H 1.09000 * 117.49546 * 359.97438 * 10 9 8 35 35 H 1.08993 * 117.50268 * 145.01556 * 10 9 8 36 36 H 1.09000 * 117.50057 * 214.97759 * 11 9 8 37 37 H 1.09009 * 117.49543 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.20443 * 336.99347 * 15 13 2 39 39 H 1.08999 * 109.21225 * 96.30724 * 15 13 2 40 40 H 1.08996 * 109.35770 * 200.92719 * 16 15 13 41 41 H 1.08999 * 109.25094 * 81.26602 * 16 15 13 42 42 H 1.08999 * 108.15720 * 196.92489 * 17 16 15 43 43 H 1.08996 * 108.15516 * 80.35977 * 17 16 15 44 44 H 0.96997 * 119.99332 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.84644 * 170.07956 * 27 18 17 46 46 H 1.08999 * 109.84584 * 49.09093 * 27 18 17 47 47 H 1.08995 * 108.52681 * 297.17261 * 28 27 18 48 48 H 1.08999 * 108.51863 * 179.64964 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1681 -0.0617 5 6 1.4036 2.4428 0.0746 6 6 1.9479 3.6832 0.2058 7 8 0.9288 4.5568 0.2334 8 6 -0.2163 3.8690 0.1212 9 6 -1.5979 4.4708 0.1082 10 6 -1.7039 5.9949 0.0269 11 6 -2.0306 5.2733 1.3368 12 7 0.0532 2.6015 0.0255 13 6 2.1975 -1.2687 0.0006 14 1 3.2712 -1.0837 0.0349 15 6 1.7749 -2.1122 1.1683 16 6 2.9797 -2.8942 1.7469 17 6 3.8921 -3.3939 0.5991 18 7 3.2224 -3.9138 -0.5579 19 6 2.8797 -5.2378 -0.6271 20 1 3.5100 -5.9835 -0.1656 21 6 1.7222 -5.6214 -1.2904 22 7 0.9883 -4.7201 -1.9081 23 14 1.2062 -7.4166 -1.3064 24 1 2.1939 -8.2223 -0.5445 25 1 -0.1326 -7.5524 -0.6783 26 1 1.1467 -7.9021 -2.7085 27 6 2.9029 -2.9827 -1.6918 28 6 1.8418 -2.0842 -1.2384 29 1 -0.3633 0.1067 -1.0221 30 1 -0.3633 -0.9386 0.4185 31 1 -0.3634 0.8317 0.6035 32 1 2.9994 3.9198 0.2745 33 1 -2.3609 3.8851 -0.4048 34 1 -0.7743 6.5624 -0.0167 35 1 -2.5367 6.4120 -0.5391 36 1 -3.0783 5.2161 1.6320 37 1 -1.3157 5.3664 2.1544 38 1 1.3594 -1.4687 1.9437 39 1 1.0116 -2.8190 0.8426 40 1 2.6156 -3.7488 2.3171 41 1 3.5515 -2.2387 2.4037 42 1 4.5404 -4.1750 0.9961 43 1 4.5239 -2.5643 0.2818 44 1 0.1793 -4.9881 -2.3713 45 1 2.5604 -3.5541 -2.5546 46 1 3.7885 -2.4053 -1.9573 47 1 0.9550 -2.6786 -1.0188 48 1 1.6013 -1.3959 -2.0486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948836272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:14 Heat of formation + Delta-G solvation = 43.579358 kcal Electronic energy + Delta-G solvation = -29657.125905 eV Core-core repulsion = 25715.706486 eV Total energy + Delta-G solvation = -3941.419418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.55294 -41.24361 -39.28145 -38.09946 -36.82039 -35.99896 -34.43955 -32.87876 -32.41004 -31.29265 -28.16045 -27.85785 -26.28465 -25.24726 -24.94009 -24.44764 -23.28266 -22.32350 -21.55320 -20.71985 -20.04297 -18.73245 -18.61479 -18.08233 -17.78647 -17.20507 -16.91320 -16.68032 -16.26741 -15.85215 -15.53068 -15.46863 -15.32413 -14.81913 -14.73968 -14.41145 -14.09502 -13.58546 -13.52214 -13.46397 -13.36331 -13.14207 -12.96772 -12.71039 -12.64381 -12.56047 -12.42408 -12.02132 -11.86504 -11.80875 -11.79694 -11.66087 -11.54476 -11.50811 -11.23140 -11.06897 -11.03883 -10.42574 -10.02401 -9.56745 -8.50332 -7.80393 -5.35731 0.00445 0.84738 1.46460 1.47702 1.50772 1.59340 1.88565 2.12222 2.53558 2.63017 2.91822 3.33787 3.44738 3.61705 3.70639 3.81984 3.94315 3.98267 4.11651 4.15963 4.18551 4.37736 4.41294 4.53439 4.56083 4.60734 4.64739 4.69955 4.78237 4.81070 4.85046 4.92503 4.97531 5.04303 5.09035 5.18711 5.21404 5.22353 5.22558 5.33015 5.34314 5.48409 5.63191 5.69171 5.73109 6.08228 6.28914 6.46700 6.50838 6.98688 7.21232 7.88561 8.45406 9.23031 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.002777 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.898272 B =10079.428160 C =10728.436472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.588 5.588 3 C 0.589 3.411 4 O -0.574 6.574 5 C -0.093 4.093 6 C 0.029 3.971 7 O -0.191 6.191 8 C 0.229 3.771 9 C -0.095 4.095 10 C -0.149 4.149 11 C -0.148 4.148 12 N -0.473 5.473 13 C 0.153 3.847 14 H 0.082 0.918 15 C -0.100 4.100 16 C -0.131 4.131 17 C 0.152 3.848 18 N -0.602 5.602 19 C -0.261 4.261 20 H 0.060 0.940 21 C -0.034 4.034 22 N -0.917 5.917 23 Si 0.961 3.039 24 H -0.273 1.273 25 H -0.291 1.291 26 H -0.294 1.294 27 C 0.170 3.830 28 C -0.110 4.110 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.257 0.743 33 H 0.157 0.843 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.248 0.752 45 H 0.073 0.927 46 H 0.005 0.995 47 H 0.080 0.920 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 22.893 6.409 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.317 5.317 3 C 0.378 3.622 4 O -0.455 6.455 5 C -0.212 4.212 6 C -0.045 4.045 7 O -0.078 6.078 8 C 0.021 3.979 9 C -0.114 4.114 10 C -0.186 4.186 11 C -0.186 4.186 12 N -0.203 5.203 13 C 0.050 3.950 14 H 0.101 0.899 15 C -0.138 4.138 16 C -0.172 4.172 17 C 0.024 3.976 18 N -0.325 5.325 19 C -0.392 4.392 20 H 0.078 0.922 21 C -0.230 4.230 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.198 1.198 25 H -0.218 1.218 26 H -0.221 1.221 27 C 0.046 3.954 28 C -0.149 4.149 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.273 0.727 33 H 0.175 0.825 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.023 0.977 47 H 0.098 0.902 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.197 22.336 6.202 24.273 hybrid contribution 0.261 -0.995 -0.320 1.077 sum -6.936 21.341 5.883 23.198 Atomic orbital electron populations 1.22093 0.77464 1.03601 1.02494 1.47931 1.08476 1.05108 1.70194 1.17202 0.85896 0.82740 0.76354 1.90762 1.13962 1.87382 1.53431 1.21590 0.90356 0.95186 1.14023 1.25700 0.94379 0.85955 0.98434 1.84370 1.15375 1.39024 1.68987 1.25993 0.88941 0.85011 0.97958 1.20569 0.86055 0.96359 1.08432 1.23249 1.05039 0.89962 1.00394 1.23268 1.04275 0.99936 0.91076 1.70881 1.12894 1.17193 1.19334 1.20386 0.96275 0.81558 0.96762 0.89947 1.21580 0.98818 0.97193 0.96245 1.22718 0.97125 0.98750 0.98625 1.20529 0.93283 0.96099 0.87724 1.44189 1.69782 1.05595 1.12906 1.19389 1.02715 0.84009 1.33056 0.92199 1.25847 0.96006 1.00794 1.00327 1.70043 1.16070 1.32796 1.37303 0.85302 0.77640 0.81190 0.76819 1.19793 1.21824 1.22070 1.20029 0.92851 0.90259 0.92227 1.21071 1.02538 0.96373 0.94954 0.93296 0.91814 0.87391 0.72716 0.82516 0.88167 0.85003 0.85028 0.88694 0.92459 0.93264 0.92853 0.91219 0.94732 0.95055 0.94199 0.90930 0.97728 0.90151 0.95914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.74 8.88 127.77 1.13 3.87 16 2 N -0.59 -21.59 2.64 -832.58 -2.20 -23.79 16 3 C 0.59 21.34 7.67 86.66 0.66 22.01 16 4 O -0.57 -23.54 16.26 -4.07 -0.07 -23.61 16 5 C -0.09 -2.70 6.66 40.41 0.27 -2.43 16 6 C 0.03 0.64 11.95 67.32 0.80 1.45 16 7 O -0.19 -3.77 10.40 0.35 0.00 -3.77 16 8 C 0.23 4.68 7.80 88.39 0.69 5.37 16 9 C -0.10 -1.17 6.33 -11.54 -0.07 -1.25 16 10 C -0.15 -1.10 10.16 30.62 0.31 -0.78 16 11 C -0.15 -1.17 10.24 30.62 0.31 -0.85 16 12 N -0.47 -12.47 7.86 -293.03 -2.30 -14.78 16 13 C 0.15 6.27 2.30 43.91 0.10 6.37 16 14 H 0.08 3.68 5.12 -2.38 -0.01 3.66 16 15 C -0.10 -3.97 4.24 30.30 0.13 -3.84 16 16 C -0.13 -5.07 6.41 31.88 0.20 -4.87 16 17 C 0.15 6.65 5.17 87.60 0.45 7.10 16 18 N -0.60 -30.62 2.59 -707.82 -1.84 -32.45 16 19 C -0.26 -14.26 9.59 84.03 0.81 -13.46 16 20 H 0.06 3.26 7.83 -2.91 -0.02 3.24 16 21 C -0.03 -1.82 5.33 84.86 0.45 -1.37 16 22 N -0.92 -50.99 8.85 21.65 0.19 -50.80 16 23 Si 0.96 44.38 29.55 68.60 2.03 46.40 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 27 C 0.17 8.55 5.23 83.58 0.44 8.99 16 28 C -0.11 -5.07 4.21 28.36 0.12 -4.95 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 2.07 7.15 -2.39 -0.02 2.05 16 31 H 0.11 3.15 5.31 -2.39 -0.01 3.14 16 32 H 0.26 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.16 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.10 0.84 7.94 -2.39 -0.02 0.82 16 35 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.13 0.52 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 2.05 7.82 -2.39 -0.02 2.03 16 39 H 0.05 2.23 6.83 -2.39 -0.02 2.22 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.03 1.48 8.00 -2.39 -0.02 1.46 16 43 H 0.03 1.34 6.89 -2.39 -0.02 1.32 16 44 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 45 H 0.07 4.05 6.10 -2.39 -0.01 4.04 16 46 H 0.00 0.23 8.12 -2.39 -0.02 0.21 16 47 H 0.08 4.11 5.21 -2.39 -0.01 4.10 16 48 H 0.02 1.04 8.02 -2.39 -0.02 1.02 16 Total: -1.00 -66.88 375.34 3.61 -63.27 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.97 Total: 18.16 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 6.81 Total: 21.36 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -6.14 Total: -121.82 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.06 Total: -27.37 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -66.88 3.61 -63.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948836272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.849 kcal (2) G-P(sol) polarization free energy of solvation -66.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds