Wall clock time and date at job start Tue Mar 31 2020 17:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35688 * 117.00081 * 2 1 4 4 C 1.38899 * 119.62201 * 180.26132 * 3 2 1 5 5 C 1.39572 * 118.94291 * 180.31662 * 4 3 2 6 6 C 1.48166 * 120.88939 * 179.70943 * 5 4 3 7 7 O 1.21509 * 119.99687 * 359.72093 * 6 5 4 8 8 N 1.34775 * 119.99851 * 179.72504 * 6 5 4 9 9 C 1.46500 * 120.00001 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47237 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.44705 * 295.04625 * 10 9 8 12 12 C 1.54860 * 109.42991 * 175.11653 * 10 9 8 13 13 C 1.47086 * 110.32507 * 168.70164 * 12 10 9 14 14 C 1.52568 * 114.32658 * 62.80320 * 13 12 10 15 15 C 1.50887 * 109.35638 * 274.98947 * 14 13 12 16 16 C 1.54299 * 110.23638 * 91.79479 * 15 14 13 17 17 N 1.44570 * 109.45208 * 54.99474 * 10 9 8 18 18 C 1.36939 * 118.64587 * 30.72105 * 17 10 9 19 19 H 1.08000 * 119.99695 * 28.09306 * 18 17 10 20 20 C 1.38814 * 119.99996 * 208.10094 * 18 17 10 21 21 N 1.31621 * 119.99570 * 199.70300 * 20 18 17 22 22 Si 1.86796 * 120.00217 * 19.70124 * 20 18 17 23 23 H 1.48498 * 109.46892 * 270.00262 * 22 20 18 24 24 H 1.48499 * 109.47138 * 149.99955 * 22 20 18 25 25 H 1.48498 * 109.47251 * 30.00276 * 22 20 18 26 26 C 1.39965 * 118.21685 * 359.43925 * 5 4 3 27 27 C 1.37974 * 119.13845 * 0.27319 * 26 5 4 28 28 N 1.31912 * 120.97261 * 0.02562 * 27 26 5 29 29 H 1.08993 * 109.47677 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46643 * 299.99744 * 1 2 3 31 31 H 1.09001 * 109.47380 * 59.99599 * 1 2 3 32 32 H 1.08003 * 120.52623 * 0.05129 * 4 3 2 33 33 H 0.96998 * 120.00214 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47303 * 59.99464 * 9 8 6 35 35 H 1.08999 * 109.46749 * 299.99606 * 9 8 6 36 36 H 1.08999 * 109.32688 * 288.96638 * 12 10 9 37 37 H 1.09006 * 109.32836 * 48.61252 * 12 10 9 38 38 H 1.09001 * 108.51610 * 184.05647 * 13 12 10 39 39 H 1.09003 * 108.51726 * 301.70224 * 13 12 10 40 40 H 1.09001 * 109.49168 * 34.95021 * 14 13 12 41 41 H 1.08998 * 109.49679 * 155.02381 * 14 13 12 42 42 H 1.09005 * 109.36450 * 212.07408 * 15 14 13 43 43 H 1.09000 * 109.36849 * 331.69214 * 15 14 13 44 44 H 1.08999 * 109.14025 * 199.01345 * 16 15 14 45 45 H 1.09007 * 108.95807 * 80.26769 * 16 15 14 46 46 H 0.97006 * 120.00004 * 354.89630 * 21 20 18 47 47 H 1.08002 * 120.42743 * 180.29340 * 26 5 4 48 48 H 1.07995 * 119.51612 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0055 5 6 4.0514 2.5235 0.0013 6 6 5.5284 2.6414 0.0023 7 8 6.2177 1.6408 0.0022 8 7 6.1072 3.8586 0.0033 9 6 7.5675 3.9753 0.0037 10 6 7.9611 5.4538 0.0055 11 1 7.6340 5.9175 -0.9252 12 6 9.4997 5.5772 0.1303 13 6 9.9244 6.9602 -0.1345 14 6 9.3819 7.9851 0.8570 15 6 8.0056 8.4233 0.4205 16 6 6.9287 7.5390 1.0832 17 7 7.3290 6.1188 1.1228 18 6 7.0866 5.4001 2.2629 19 1 7.7180 4.5616 2.5172 20 6 6.0291 5.7491 3.0918 21 7 6.0124 5.3429 4.3436 22 14 4.6300 6.7953 2.4305 23 1 4.9438 8.2314 2.6404 24 1 3.3748 6.4530 3.1464 25 1 4.4591 6.5330 0.9789 26 6 3.2395 3.6635 0.0014 27 6 1.8681 3.5116 0.0005 28 7 1.3179 2.3127 0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.0231 0.3682 -0.0106 33 1 5.5569 4.6574 0.0031 34 1 7.9709 3.4926 -0.8865 35 1 7.9704 3.4914 0.8935 36 1 9.8039 5.2929 1.1376 37 1 9.9746 4.9122 -0.5911 38 1 11.0135 6.9985 -0.1106 39 1 9.5915 7.2392 -1.1343 40 1 9.3231 7.5361 1.8485 41 1 10.0459 8.8489 0.8873 42 1 7.8484 9.4624 0.7099 43 1 7.9250 8.3356 -0.6630 44 1 5.9980 7.6289 0.5230 45 1 6.7617 7.8882 2.1022 46 1 6.6996 4.7394 4.6669 47 1 3.6807 4.6493 0.0018 48 1 1.2358 4.3871 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968928648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:23 Heat of formation + Delta-G solvation = -14.320557 kcal Electronic energy + Delta-G solvation = -30009.694712 eV Core-core repulsion = 26065.764565 eV Total energy + Delta-G solvation = -3943.930147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.73174 -39.35041 -38.37000 -37.56560 -34.75282 -33.66152 -32.73162 -31.87931 -31.29083 -30.63494 -27.52694 -27.27968 -25.80752 -24.35940 -23.29003 -23.21963 -22.15651 -20.41124 -19.83686 -19.64391 -18.44056 -17.21742 -17.03138 -16.30182 -16.05986 -15.70978 -15.60335 -15.32913 -15.03488 -14.56261 -14.26088 -14.12937 -14.08121 -14.06049 -13.44688 -13.34574 -13.06612 -12.89461 -12.36053 -12.26501 -12.18957 -12.08933 -11.72515 -11.52757 -11.41034 -11.25903 -10.91609 -10.51847 -10.24238 -10.20129 -10.18595 -10.06177 -9.84364 -9.79793 -9.54565 -9.44627 -9.12994 -8.59681 -8.53877 -8.43134 -7.11594 -6.30485 -3.40360 0.82426 1.17137 2.94188 3.17207 3.24623 3.28717 3.52874 3.63322 3.96942 4.28963 4.46024 4.75144 4.80640 5.02471 5.09212 5.12744 5.17682 5.21704 5.23124 5.26693 5.34615 5.45399 5.51145 5.63597 5.68558 5.72094 5.80500 5.85469 5.89467 6.10436 6.13350 6.14737 6.28097 6.29776 6.33760 6.37921 6.43809 6.52998 6.58288 6.66648 6.74598 6.86502 6.93252 7.00405 7.17093 7.77675 7.97276 8.02927 8.39642 8.59315 9.00080 9.56183 10.07582 11.08755 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.003841 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.418419 B = 7287.227201 C = 8110.410384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.313 3.687 4 C -0.134 4.134 5 C -0.042 4.042 6 C 0.554 3.446 7 O -0.544 6.544 8 N -0.682 5.682 9 C 0.130 3.870 10 C 0.174 3.826 11 H 0.047 0.953 12 C -0.135 4.135 13 C -0.102 4.102 14 C -0.109 4.109 15 C -0.132 4.132 16 C 0.123 3.877 17 N -0.596 5.596 18 C -0.344 4.344 19 H 0.067 0.933 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 1.063 2.937 23 H -0.295 1.295 24 H -0.301 1.301 25 H -0.290 1.290 26 C -0.178 4.178 27 C 0.136 3.864 28 N -0.530 5.530 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.153 0.847 33 H 0.404 0.596 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.021 0.979 45 H 0.071 0.929 46 H 0.264 0.736 47 H 0.143 0.857 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -0.272 -11.733 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.134 3.866 4 C -0.155 4.155 5 C -0.052 4.052 6 C 0.339 3.661 7 O -0.423 6.423 8 N -0.331 5.331 9 C 0.006 3.994 10 C 0.065 3.935 11 H 0.065 0.935 12 C -0.175 4.175 13 C -0.139 4.139 14 C -0.147 4.147 15 C -0.171 4.171 16 C -0.002 4.002 17 N -0.320 5.320 18 C -0.473 4.473 19 H 0.085 0.915 20 C -0.213 4.213 21 N -0.558 5.558 22 Si 0.897 3.103 23 H -0.223 1.223 24 H -0.229 1.229 25 H -0.217 1.217 26 C -0.199 4.199 27 C -0.019 4.019 28 N -0.254 5.254 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.241 0.759 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.161 0.839 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.386 -0.546 -11.302 12.993 hybrid contribution 1.825 0.004 -0.230 1.839 sum -4.562 -0.542 -11.532 12.414 Atomic orbital electron populations 1.22844 0.77329 1.02803 1.02459 1.86246 1.22804 1.24316 1.88033 1.19639 0.88991 0.84762 0.93226 1.21088 0.91752 0.99103 1.03582 1.20245 0.94418 0.93080 0.97489 1.17946 0.86447 0.84061 0.77632 1.90729 1.64121 1.36584 1.50877 1.45595 1.08519 1.07410 1.71610 1.21545 0.79173 0.97500 1.01152 1.20541 0.91694 0.90379 0.90901 0.93489 1.21324 0.98123 0.96220 1.01850 1.20296 0.99150 0.95774 0.98710 1.20956 0.95388 0.97391 1.00932 1.21909 0.96421 0.98915 0.99834 1.21801 0.94382 0.84172 0.99862 1.44041 1.70579 1.04703 1.12663 1.20114 1.11632 1.15218 1.00309 0.91510 1.26037 0.98856 1.01691 0.94755 1.70845 1.39029 1.33129 1.12799 0.83877 0.76848 0.75544 0.74074 1.22298 1.22871 1.21741 1.22326 0.95048 0.99533 1.02993 1.22321 0.92540 0.93559 0.93469 1.67152 1.41198 0.98891 1.18163 0.88726 0.92234 0.92371 0.82930 0.75900 0.92512 0.90750 0.91561 0.93021 0.93736 0.93403 0.90455 0.93611 0.92606 0.92978 0.96100 0.91051 0.92517 0.83927 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -4.26 10.47 -18.77 -0.20 -4.46 16 3 C 0.31 4.81 7.49 -17.16 -0.13 4.68 16 4 C -0.13 -2.19 9.61 -38.84 -0.37 -2.56 16 5 C -0.04 -0.71 5.91 -104.68 -0.62 -1.33 16 6 C 0.55 10.71 7.80 -12.18 -0.09 10.62 16 7 O -0.54 -11.84 16.44 5.36 0.09 -11.76 16 8 N -0.68 -12.67 4.68 -61.15 -0.29 -12.96 16 9 C 0.13 2.38 4.53 -4.04 -0.02 2.36 16 10 C 0.17 3.01 2.19 -67.98 -0.15 2.86 16 11 H 0.05 0.76 8.06 -51.93 -0.42 0.34 16 12 C -0.13 -2.13 5.06 -28.59 -0.14 -2.28 16 13 C -0.10 -1.46 5.16 -29.79 -0.15 -1.62 16 14 C -0.11 -1.70 5.51 -28.01 -0.15 -1.85 16 15 C -0.13 -2.05 5.71 -27.11 -0.15 -2.21 16 16 C 0.12 2.34 4.02 -2.76 -0.01 2.33 16 17 N -0.60 -12.08 1.55 -164.25 -0.25 -12.33 16 18 C -0.34 -8.44 7.94 -15.06 -0.12 -8.56 16 19 H 0.07 1.85 6.91 -52.49 -0.36 1.48 16 20 C -0.01 -0.30 5.16 -17.43 -0.09 -0.39 16 21 N -0.92 -27.10 13.70 55.49 0.76 -26.34 16 22 Si 1.06 23.93 24.38 -169.99 -4.14 19.78 16 23 H -0.29 -6.43 6.61 56.52 0.37 -6.05 16 24 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -5.61 5.97 56.52 0.34 -5.27 16 26 C -0.18 -2.73 9.61 -39.03 -0.38 -3.10 16 27 C 0.14 1.87 11.17 -17.61 -0.20 1.68 16 28 N -0.53 -7.81 9.18 -13.38 -0.12 -7.93 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.15 2.45 7.74 -52.48 -0.41 2.05 16 33 H 0.40 7.34 6.15 -40.82 -0.25 7.09 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.57 6.83 -51.93 -0.35 1.21 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.64 7.35 -51.93 -0.38 0.26 16 40 H 0.08 1.45 7.49 -51.93 -0.39 1.06 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.74 7.31 -51.93 -0.38 0.36 16 44 H 0.02 0.39 5.91 -51.93 -0.31 0.09 16 45 H 0.07 1.54 5.24 -51.93 -0.27 1.27 16 46 H 0.26 7.90 8.73 -40.82 -0.36 7.54 16 47 H 0.14 2.10 6.00 -52.49 -0.32 1.78 16 48 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -30.02 372.29 -7.58 -37.61 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.30 Total: 10.69 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.73 Total: 2.08 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.10 Total: -59.56 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.11 Total: -16.21 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.14 Total: 19.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.02 -7.58 -37.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968928648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.285 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds