Wall clock time and date at job start Tue Mar 31 2020 17:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35688 * 117.00081 * 2 1 4 4 C 1.38899 * 119.62201 * 180.26132 * 3 2 1 5 5 C 1.39572 * 118.94291 * 180.31662 * 4 3 2 6 6 C 1.48166 * 120.88939 * 179.70943 * 5 4 3 7 7 O 1.21509 * 119.99687 * 359.72093 * 6 5 4 8 8 N 1.34775 * 119.99851 * 179.72504 * 6 5 4 9 9 C 1.46500 * 120.00001 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47237 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.44705 * 295.04625 * 10 9 8 12 12 C 1.54860 * 109.42991 * 175.11653 * 10 9 8 13 13 C 1.47086 * 110.32507 * 168.70164 * 12 10 9 14 14 C 1.52568 * 114.32658 * 62.80320 * 13 12 10 15 15 C 1.50887 * 109.35638 * 274.98947 * 14 13 12 16 16 C 1.54299 * 110.23638 * 91.79479 * 15 14 13 17 17 N 1.44570 * 109.45208 * 54.99474 * 10 9 8 18 18 C 1.36939 * 118.64587 * 30.72105 * 17 10 9 19 19 H 1.08000 * 119.99695 * 28.09306 * 18 17 10 20 20 C 1.38814 * 119.99996 * 208.10094 * 18 17 10 21 21 N 1.31621 * 119.99570 * 199.70300 * 20 18 17 22 22 Si 1.86796 * 120.00217 * 19.70124 * 20 18 17 23 23 H 1.48498 * 109.46892 * 270.00262 * 22 20 18 24 24 H 1.48499 * 109.47138 * 149.99955 * 22 20 18 25 25 H 1.48498 * 109.47251 * 30.00276 * 22 20 18 26 26 C 1.39965 * 118.21685 * 359.43925 * 5 4 3 27 27 C 1.37974 * 119.13845 * 0.27319 * 26 5 4 28 28 N 1.31912 * 120.97261 * 0.02562 * 27 26 5 29 29 H 1.08993 * 109.47677 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46643 * 299.99744 * 1 2 3 31 31 H 1.09001 * 109.47380 * 59.99599 * 1 2 3 32 32 H 1.08003 * 120.52623 * 0.05129 * 4 3 2 33 33 H 0.96998 * 120.00214 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47303 * 59.99464 * 9 8 6 35 35 H 1.08999 * 109.46749 * 299.99606 * 9 8 6 36 36 H 1.08999 * 109.32688 * 288.96638 * 12 10 9 37 37 H 1.09006 * 109.32836 * 48.61252 * 12 10 9 38 38 H 1.09001 * 108.51610 * 184.05647 * 13 12 10 39 39 H 1.09003 * 108.51726 * 301.70224 * 13 12 10 40 40 H 1.09001 * 109.49168 * 34.95021 * 14 13 12 41 41 H 1.08998 * 109.49679 * 155.02381 * 14 13 12 42 42 H 1.09005 * 109.36450 * 212.07408 * 15 14 13 43 43 H 1.09000 * 109.36849 * 331.69214 * 15 14 13 44 44 H 1.08999 * 109.14025 * 199.01345 * 16 15 14 45 45 H 1.09007 * 108.95807 * 80.26769 * 16 15 14 46 46 H 0.97006 * 120.00004 * 354.89630 * 21 20 18 47 47 H 1.08002 * 120.42743 * 180.29340 * 26 5 4 48 48 H 1.07995 * 119.51612 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0055 5 6 4.0514 2.5235 0.0013 6 6 5.5284 2.6414 0.0023 7 8 6.2177 1.6408 0.0022 8 7 6.1072 3.8586 0.0033 9 6 7.5675 3.9753 0.0037 10 6 7.9611 5.4538 0.0055 11 1 7.6340 5.9175 -0.9252 12 6 9.4997 5.5772 0.1303 13 6 9.9244 6.9602 -0.1345 14 6 9.3819 7.9851 0.8570 15 6 8.0056 8.4233 0.4205 16 6 6.9287 7.5390 1.0832 17 7 7.3290 6.1188 1.1228 18 6 7.0866 5.4001 2.2629 19 1 7.7180 4.5616 2.5172 20 6 6.0291 5.7491 3.0918 21 7 6.0124 5.3429 4.3436 22 14 4.6300 6.7953 2.4305 23 1 4.9438 8.2314 2.6404 24 1 3.3748 6.4530 3.1464 25 1 4.4591 6.5330 0.9789 26 6 3.2395 3.6635 0.0014 27 6 1.8681 3.5116 0.0005 28 7 1.3179 2.3127 0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.0231 0.3682 -0.0106 33 1 5.5569 4.6574 0.0031 34 1 7.9709 3.4926 -0.8865 35 1 7.9704 3.4914 0.8935 36 1 9.8039 5.2929 1.1376 37 1 9.9746 4.9122 -0.5911 38 1 11.0135 6.9985 -0.1106 39 1 9.5915 7.2392 -1.1343 40 1 9.3231 7.5361 1.8485 41 1 10.0459 8.8489 0.8873 42 1 7.8484 9.4624 0.7099 43 1 7.9250 8.3356 -0.6630 44 1 5.9980 7.6289 0.5230 45 1 6.7617 7.8882 2.1022 46 1 6.6996 4.7394 4.6669 47 1 3.6807 4.6493 0.0018 48 1 1.2358 4.3871 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968928648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:21 Heat of formation + Delta-G solvation = -35.698246 kcal Electronic energy + Delta-G solvation = -30010.621718 eV Core-core repulsion = 26065.764565 eV Total energy + Delta-G solvation = -3944.857153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.94487 -40.77682 -39.78087 -38.73576 -36.21641 -35.35496 -34.04418 -33.24095 -33.06440 -31.79591 -28.95788 -28.27036 -27.30974 -25.71637 -24.89343 -24.44887 -23.53354 -21.83273 -21.26051 -21.09246 -19.83185 -18.74463 -18.39871 -17.61388 -17.24241 -17.06939 -16.98944 -16.75118 -16.43702 -16.05145 -15.73275 -15.54439 -15.29428 -15.14272 -14.85584 -14.59520 -14.46715 -14.37447 -14.02138 -13.72620 -13.56992 -13.23170 -12.98780 -12.94594 -12.70775 -12.46615 -12.22563 -12.07801 -11.73737 -11.50681 -11.49325 -11.42838 -11.27980 -11.11729 -11.09745 -10.88397 -10.76575 -10.52461 -10.01534 -9.66783 -8.96489 -8.37068 -5.43403 -0.45675 0.01146 1.41893 1.53077 1.71997 1.74307 1.85328 2.28738 2.62561 2.70924 3.12901 3.23077 3.40333 3.51382 3.82634 3.88158 3.92395 3.95902 4.04673 4.18327 4.28601 4.32906 4.42579 4.44637 4.47782 4.48685 4.56309 4.65545 4.73937 4.75688 4.81261 4.89406 4.93316 4.96470 5.10237 5.12889 5.13369 5.18677 5.33727 5.38379 5.44656 5.50607 5.54119 5.68474 5.95148 6.10725 6.34425 6.47645 6.63424 7.03392 7.08739 7.73710 8.12517 8.98007 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.003841 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.418419 B = 7287.227201 C = 8110.410384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.318 6.318 3 C 0.312 3.688 4 C -0.150 4.150 5 C -0.058 4.058 6 C 0.549 3.451 7 O -0.579 6.579 8 N -0.679 5.679 9 C 0.132 3.868 10 C 0.173 3.827 11 H 0.082 0.918 12 C -0.128 4.128 13 C -0.101 4.101 14 C -0.109 4.109 15 C -0.125 4.125 16 C 0.114 3.886 17 N -0.602 5.602 18 C -0.301 4.301 19 H 0.019 0.981 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 1.094 2.906 23 H -0.282 1.282 24 H -0.319 1.319 25 H -0.235 1.235 26 C -0.182 4.182 27 C 0.146 3.854 28 N -0.528 5.528 29 H 0.124 0.876 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.408 0.592 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.240 0.760 47 H 0.153 0.847 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 2.127 -15.314 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C 0.133 3.867 4 C -0.171 4.171 5 C -0.069 4.069 6 C 0.336 3.664 7 O -0.460 6.460 8 N -0.328 5.328 9 C 0.008 3.992 10 C 0.066 3.934 11 H 0.100 0.900 12 C -0.169 4.169 13 C -0.139 4.139 14 C -0.147 4.147 15 C -0.163 4.163 16 C -0.010 4.010 17 N -0.326 5.326 18 C -0.432 4.432 19 H 0.037 0.963 20 C -0.265 4.265 21 N -0.611 5.611 22 Si 0.921 3.079 23 H -0.209 1.209 24 H -0.248 1.248 25 H -0.159 1.159 26 C -0.202 4.202 27 C -0.010 4.010 28 N -0.253 5.253 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.246 0.754 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.170 0.830 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.723 1.867 -14.953 16.933 hybrid contribution 2.331 -0.819 0.880 2.622 sum -5.393 1.049 -14.073 15.107 Atomic orbital electron populations 1.23147 0.75204 1.04945 1.02662 1.86241 1.24916 1.23690 1.87654 1.19685 0.88712 0.85563 0.92749 1.21077 0.92567 0.98720 1.04786 1.20146 0.93149 0.94345 0.99263 1.18371 0.87557 0.83735 0.76772 1.90698 1.65220 1.37626 1.52497 1.45589 1.08596 1.07385 1.71182 1.21543 0.79192 0.98309 1.00160 1.20748 0.92358 0.89371 0.90956 0.90030 1.21264 0.96963 0.98240 1.00399 1.20288 1.00125 0.93943 0.99497 1.20945 0.96473 0.98351 0.98891 1.21870 0.94527 0.98880 1.01058 1.21923 0.96683 0.83355 0.99033 1.44061 1.70824 1.05574 1.12150 1.19747 1.09250 1.13110 1.01066 0.96280 1.27273 1.01557 1.03446 0.94201 1.71016 1.39370 1.35624 1.15074 0.83584 0.73003 0.74821 0.76487 1.20936 1.24820 1.15938 1.22472 0.95671 0.99068 1.03016 1.22996 0.92362 0.94414 0.91201 1.67289 1.40934 0.99038 1.18020 0.85755 0.92384 0.91699 0.83807 0.75429 0.90404 0.94920 0.95338 0.90660 0.92315 0.90730 0.94865 0.91399 0.90780 0.90172 0.94071 0.94075 0.95079 0.82968 0.77634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.38 113.37 1.18 1.81 16 2 O -0.32 -8.54 10.47 -90.07 -0.94 -9.48 16 3 C 0.31 9.34 7.49 84.80 0.63 9.98 16 4 C -0.15 -4.98 9.61 22.75 0.22 -4.76 16 5 C -0.06 -2.00 5.91 -19.90 -0.12 -2.12 16 6 C 0.55 21.64 7.80 86.88 0.68 22.32 16 7 O -0.58 -26.29 16.44 -3.74 -0.06 -26.35 16 8 N -0.68 -24.94 4.68 -465.67 -2.18 -27.12 16 9 C 0.13 4.82 4.53 86.38 0.39 5.21 16 10 C 0.17 5.67 2.19 45.99 0.10 5.77 16 11 H 0.08 2.23 8.06 -2.38 -0.02 2.21 16 12 C -0.13 -3.86 5.06 29.39 0.15 -3.71 16 13 C -0.10 -2.55 5.16 28.61 0.15 -2.40 16 14 C -0.11 -3.09 5.51 29.76 0.16 -2.93 16 15 C -0.12 -3.35 5.71 30.35 0.17 -3.17 16 16 C 0.11 4.03 4.02 86.61 0.35 4.37 16 17 N -0.60 -23.81 1.55 -673.57 -1.04 -24.85 16 18 C -0.30 -15.39 7.94 84.03 0.67 -14.72 16 19 H 0.02 1.16 6.91 -2.91 -0.02 1.14 16 20 C -0.07 -3.90 5.16 84.86 0.44 -3.47 16 21 N -0.97 -60.49 13.70 21.65 0.30 -60.19 16 22 Si 1.09 47.21 24.38 68.60 1.67 48.88 16 23 H -0.28 -11.56 6.61 99.48 0.66 -10.91 16 24 H -0.32 -14.73 7.11 99.48 0.71 -14.02 16 25 H -0.24 -7.89 5.97 99.48 0.59 -7.30 16 26 C -0.18 -5.18 9.61 22.63 0.22 -4.96 16 27 C 0.15 3.56 11.17 84.62 0.94 4.50 16 28 N -0.53 -14.42 9.18 -309.14 -2.84 -17.26 16 29 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.08 8.10 -2.38 -0.02 1.06 16 31 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 32 H 0.14 4.89 7.74 -2.91 -0.02 4.87 16 33 H 0.41 14.02 6.15 -92.71 -0.57 13.45 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.03 1.46 6.83 -2.39 -0.02 1.44 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.92 8.11 -2.38 -0.02 1.90 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.55 7.35 -2.39 -0.02 1.54 16 40 H 0.03 1.23 7.49 -2.39 -0.02 1.21 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.08 1.76 7.31 -2.39 -0.02 1.75 16 44 H 0.04 1.32 5.91 -2.39 -0.01 1.31 16 45 H 0.04 1.71 5.24 -2.38 -0.01 1.70 16 46 H 0.24 15.58 8.73 -92.70 -0.81 14.77 16 47 H 0.15 3.96 6.00 -2.91 -0.02 3.95 16 48 H 0.21 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -72.05 372.29 1.44 -70.61 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.21 Total: 34.04 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.33 Total: 11.72 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -5.76 Total: -129.42 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.00 Total: -35.83 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.67 Total: 48.88 kcal Total: -72.05 1.44 -70.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968928648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.912 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds