Wall clock time and date at job start Tue Mar 31 2020 17:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35428 * 117.00108 * 2 1 4 4 N 1.32237 * 119.79717 * 359.97226 * 3 2 1 5 5 C 1.31881 * 121.80087 * 180.02562 * 4 3 2 6 6 C 1.38360 * 121.18085 * 359.97438 * 5 4 3 7 7 C 1.38332 * 119.46022 * 359.78469 * 6 5 4 8 8 C 1.39986 * 118.34944 * 0.47872 * 7 6 5 9 9 C 1.47522 * 120.59749 * 179.75442 * 8 7 6 10 10 O 1.21587 * 120.00144 * 179.72307 * 9 8 7 11 11 N 1.34774 * 120.00167 * 359.72371 * 9 8 7 12 12 C 1.46496 * 120.00211 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47324 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.42670 * 64.93340 * 13 12 11 15 15 C 1.54863 * 109.45076 * 184.86658 * 13 12 11 16 16 C 1.47098 * 110.32250 * 191.29262 * 15 13 12 17 17 C 1.52557 * 114.32816 * 297.19252 * 16 15 13 18 18 C 1.50882 * 109.35333 * 85.02756 * 17 16 15 19 19 C 1.53945 * 110.09380 * 268.11314 * 18 17 16 20 20 N 1.44575 * 109.45064 * 304.99749 * 13 12 11 21 21 C 1.36938 * 118.64427 * 329.27278 * 20 13 12 22 22 H 1.08003 * 119.99189 * 331.90710 * 21 20 13 23 23 C 1.38805 * 120.00311 * 151.91244 * 21 20 13 24 24 N 1.31621 * 120.00167 * 344.13809 * 23 21 20 25 25 Si 1.86808 * 119.99796 * 164.14264 * 23 21 20 26 26 H 1.48499 * 109.46880 * 94.37029 * 25 23 21 27 27 H 1.48502 * 109.46930 * 214.36506 * 25 23 21 28 28 H 1.48493 * 109.47061 * 334.36946 * 25 23 21 29 29 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47080 * 300.00474 * 1 2 3 31 31 H 1.09000 * 109.46735 * 60.00408 * 1 2 3 32 32 H 1.08001 * 119.41235 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.26776 * 180.02562 * 6 5 4 34 34 H 1.08005 * 120.82454 * 180.23376 * 7 6 5 35 35 H 0.97004 * 120.00156 * 0.02562 * 11 9 8 36 36 H 1.08994 * 109.47176 * 60.00051 * 12 11 9 37 37 H 1.09001 * 109.47566 * 300.00106 * 12 11 9 38 38 H 1.09001 * 109.33022 * 311.55166 * 15 13 12 39 39 H 1.09008 * 109.33261 * 71.03104 * 15 13 12 40 40 H 1.09004 * 108.51194 * 175.93656 * 16 15 13 41 41 H 1.09004 * 108.38703 * 58.36131 * 16 15 13 42 42 H 1.08999 * 109.49376 * 325.06169 * 17 16 15 43 43 H 1.09007 * 109.51173 * 205.00105 * 17 16 15 44 44 H 1.08997 * 109.37012 * 147.91677 * 18 17 16 45 45 H 1.09002 * 109.25917 * 28.23497 * 18 17 16 46 46 H 1.08994 * 108.94627 * 279.87530 * 19 18 17 47 47 H 1.08992 * 108.87634 * 161.19427 * 19 18 17 48 48 H 0.97000 * 119.99826 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3131 -0.0006 5 6 1.8771 3.5084 -0.0011 6 6 3.2526 3.6575 -0.0005 7 6 4.0588 2.5333 0.0051 8 6 3.4450 1.2752 -0.0002 9 6 4.2570 0.0436 0.0000 10 8 3.7126 -1.0436 0.0004 11 7 5.6024 0.1234 -0.0003 12 6 6.4088 -1.0997 0.0004 13 6 7.8938 -0.7315 0.0005 14 1 8.1407 -0.2211 0.9314 15 6 8.7445 -2.0197 -0.1226 16 6 10.1606 -1.7242 0.1440 17 6 10.7977 -0.7550 -0.8470 18 6 10.5172 0.6620 -0.4113 19 6 9.2277 1.1748 -1.0778 20 7 8.1731 0.1427 -1.1166 21 6 7.4282 0.0082 -2.2577 22 1 6.9986 -0.9495 -2.5122 23 6 7.2253 1.1024 -3.0872 24 7 7.4679 2.3179 -2.6444 25 14 6.6078 0.8500 -4.8321 26 1 5.1293 0.9869 -4.8586 27 1 7.2153 1.8696 -5.7246 28 1 6.9877 -0.5071 -5.3001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2485 4.3867 -0.0011 33 1 3.6934 4.6435 -0.0006 34 1 5.1350 2.6240 0.0094 35 1 6.0368 0.9907 -0.0003 36 1 6.1796 -1.6865 -0.8890 37 1 6.1800 -1.6853 0.8908 38 1 8.3883 -2.7574 0.5965 39 1 8.6437 -2.4238 -1.1300 40 1 10.7196 -2.6597 0.1213 41 1 10.2407 -1.2988 1.1444 42 1 10.3774 -0.9204 -1.8390 43 1 11.8749 -0.9199 -0.8763 44 1 11.3519 1.3009 -0.6997 45 1 10.3993 0.6884 0.6720 46 1 9.4559 1.4861 -2.0971 47 1 8.8602 2.0355 -0.5191 48 1 7.3264 3.0826 -3.2242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969011651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:37 Heat of formation + Delta-G solvation = -14.805097 kcal Electronic energy + Delta-G solvation = -30338.841488 eV Core-core repulsion = 26394.890330 eV Total energy + Delta-G solvation = -3943.951158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.60744 -38.84351 -37.84407 -37.63934 -34.43276 -33.47549 -32.66471 -31.44518 -30.71917 -30.57144 -27.35160 -26.83940 -25.70047 -24.17840 -23.47536 -22.75259 -21.96451 -20.11184 -19.59851 -19.19765 -18.30631 -17.27462 -16.83190 -16.02466 -15.88534 -15.54260 -14.94808 -14.89382 -14.58840 -14.28413 -14.03501 -13.95736 -13.75308 -13.57521 -13.25963 -13.10588 -12.68975 -12.63670 -12.35355 -12.06778 -11.93011 -11.61082 -11.46682 -11.23616 -11.10090 -11.07534 -10.83978 -10.60188 -10.21628 -10.03753 -9.99231 -9.82033 -9.72538 -9.70979 -9.58602 -9.54666 -9.09656 -8.43974 -8.40309 -8.07041 -6.71805 -5.85172 -3.28203 0.93778 1.43889 3.25046 3.35019 3.39560 3.43088 3.46586 3.85927 4.19073 4.41232 4.47216 4.98895 5.07863 5.19361 5.22541 5.33356 5.35124 5.39571 5.43083 5.44002 5.50219 5.64303 5.68725 5.69832 5.90525 5.99995 6.06714 6.09054 6.15060 6.26740 6.34345 6.37919 6.50694 6.56605 6.62586 6.65216 6.70056 6.76243 6.83340 6.99263 7.10463 7.29376 7.38099 7.40586 7.62752 7.81711 7.88058 8.36537 8.41037 8.98706 9.18812 9.83166 10.28191 11.21763 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.004285 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.234749 B = 6532.960900 C = 7251.157212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.270 6.270 3 C 0.363 3.637 4 N -0.552 5.552 5 C 0.154 3.846 6 C -0.219 4.219 7 C 0.003 3.997 8 C -0.197 4.197 9 C 0.558 3.442 10 O -0.541 6.541 11 N -0.687 5.687 12 C 0.131 3.869 13 C 0.173 3.827 14 H 0.044 0.956 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.107 4.107 18 C -0.143 4.143 19 C 0.181 3.819 20 N -0.584 5.584 21 C -0.247 4.247 22 H 0.063 0.937 23 C 0.013 3.987 24 N -0.903 5.903 25 Si 0.889 3.111 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.160 0.840 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.023 0.977 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 1.588 7.630 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.174 6.174 3 C 0.183 3.817 4 N -0.276 5.276 5 C -0.003 4.003 6 C -0.239 4.239 7 C -0.023 4.023 8 C -0.203 4.203 9 C 0.344 3.656 10 O -0.420 6.420 11 N -0.337 5.337 12 C 0.007 3.993 13 C 0.064 3.936 14 H 0.062 0.938 15 C -0.177 4.177 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.182 4.182 19 C 0.056 3.944 20 N -0.306 5.306 21 C -0.376 4.376 22 H 0.080 0.920 23 C -0.185 4.185 24 N -0.548 5.548 25 Si 0.719 3.281 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.042 0.958 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.151 0.598 7.557 9.165 hybrid contribution 0.602 0.692 -1.203 1.512 sum -4.549 1.290 6.354 7.920 Atomic orbital electron populations 1.22885 0.78265 1.02868 1.01938 1.86555 1.21689 1.23170 1.85996 1.19855 0.88265 0.84907 0.88660 1.67400 1.40435 0.98699 1.21103 1.22535 0.93065 0.93570 0.91116 1.21917 0.94572 1.00051 1.07386 1.21849 1.01449 0.90347 0.88615 1.20183 0.91429 0.95627 1.13039 1.17657 0.82476 0.87854 0.77627 1.90755 1.72059 1.28365 1.50845 1.45551 1.04700 1.10959 1.72520 1.21470 0.90833 0.86442 1.00585 1.20518 0.90738 0.90958 0.91376 0.93769 1.21369 0.95799 0.98982 1.01541 1.20288 0.96365 0.98366 0.98801 1.20946 0.97767 0.95065 1.00653 1.22069 1.00099 0.96348 0.99685 1.20983 0.84246 0.88992 1.00131 1.43732 1.36561 1.38937 1.11339 1.19026 1.26420 0.93766 0.98414 0.91964 1.24863 0.99657 0.95129 0.98854 1.70015 1.52973 0.96943 1.34825 0.86491 0.78523 0.77384 0.85711 1.21642 1.21707 1.20545 0.88712 0.92587 0.92539 0.82326 0.84096 0.82995 0.75486 0.91341 0.93135 0.93285 0.91810 0.94101 0.93545 0.90768 0.94230 0.93275 0.93805 0.90904 0.95842 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 101.05 1.05 1.52 16 2 O -0.27 -4.94 8.58 -39.75 -0.34 -5.28 16 3 C 0.36 6.56 7.51 -16.61 -0.12 6.44 16 4 N -0.55 -8.62 9.21 -12.98 -0.12 -8.74 16 5 C 0.15 1.97 11.17 -17.49 -0.20 1.78 16 6 C -0.22 -2.87 10.09 -39.50 -0.40 -3.27 16 7 C 0.00 0.05 9.64 -38.89 -0.37 -0.32 16 8 C -0.20 -3.66 5.90 -104.69 -0.62 -4.28 16 9 C 0.56 11.65 7.77 -12.48 -0.10 11.55 16 10 O -0.54 -12.68 15.19 -16.48 -0.25 -12.93 16 11 N -0.69 -13.57 4.67 -61.36 -0.29 -13.85 16 12 C 0.13 2.52 4.52 -4.04 -0.02 2.50 16 13 C 0.17 3.18 2.19 -67.98 -0.15 3.03 16 14 H 0.04 0.79 8.06 -51.93 -0.42 0.38 16 15 C -0.14 -2.26 5.06 -28.58 -0.14 -2.40 16 16 C -0.10 -1.55 5.16 -29.79 -0.15 -1.70 16 17 C -0.11 -1.77 5.51 -28.02 -0.15 -1.92 16 18 C -0.14 -2.46 5.71 -27.30 -0.16 -2.61 16 19 C 0.18 3.77 4.66 -2.94 -0.01 3.76 16 20 N -0.58 -12.30 1.77 -164.47 -0.29 -12.59 16 21 C -0.25 -5.95 7.63 -15.06 -0.11 -6.06 16 22 H 0.06 1.60 6.74 -52.48 -0.35 1.24 16 23 C 0.01 0.34 4.85 -17.43 -0.08 0.25 16 24 N -0.90 -22.83 11.14 55.49 0.62 -22.22 16 25 Si 0.89 21.20 29.58 -169.99 -5.03 16.17 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.15 2.43 6.52 -52.48 -0.34 2.09 16 35 H 0.41 8.06 6.18 -40.82 -0.25 7.81 16 36 H 0.07 1.47 6.84 -51.93 -0.35 1.11 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 39 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 42 H 0.07 1.42 7.48 -51.93 -0.39 1.03 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.71 7.31 -51.93 -0.38 0.34 16 46 H 0.07 1.74 6.46 -51.93 -0.34 1.40 16 47 H 0.02 0.52 8.02 -51.93 -0.42 0.11 16 48 H 0.25 6.39 8.31 -40.82 -0.34 6.05 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -28.81 377.76 -9.16 -37.96 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.40 Total: 7.51 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.75 Total: 8.27 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.08 Total: -57.39 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.59 Total: -18.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.81 -9.16 -37.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969011651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.159 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds