Wall clock time and date at job start Tue Mar 31 2020 17:32:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35428 * 117.00108 * 2 1
4 4 N 1.32237 * 119.79717 * 359.97226 * 3 2 1
5 5 C 1.31881 * 121.80087 * 180.02562 * 4 3 2
6 6 C 1.38360 * 121.18085 * 359.97438 * 5 4 3
7 7 C 1.38332 * 119.46022 * 359.78469 * 6 5 4
8 8 C 1.39986 * 118.34944 * 0.47872 * 7 6 5
9 9 C 1.47522 * 120.59749 * 179.75442 * 8 7 6
10 10 O 1.21587 * 120.00144 * 179.72307 * 9 8 7
11 11 N 1.34774 * 120.00167 * 359.72371 * 9 8 7
12 12 C 1.46496 * 120.00211 * 179.97438 * 11 9 8
13 13 C 1.53001 * 109.47324 * 180.02562 * 12 11 9
14 14 H 1.09002 * 109.42670 * 64.93340 * 13 12 11
15 15 C 1.54863 * 109.45076 * 184.86658 * 13 12 11
16 16 C 1.47098 * 110.32250 * 191.29262 * 15 13 12
17 17 C 1.52557 * 114.32816 * 297.19252 * 16 15 13
18 18 C 1.50882 * 109.35333 * 85.02756 * 17 16 15
19 19 C 1.53945 * 110.09380 * 268.11314 * 18 17 16
20 20 N 1.44575 * 109.45064 * 304.99749 * 13 12 11
21 21 C 1.36938 * 118.64427 * 329.27278 * 20 13 12
22 22 H 1.08003 * 119.99189 * 331.90710 * 21 20 13
23 23 C 1.38805 * 120.00311 * 151.91244 * 21 20 13
24 24 N 1.31621 * 120.00167 * 344.13809 * 23 21 20
25 25 Si 1.86808 * 119.99796 * 164.14264 * 23 21 20
26 26 H 1.48499 * 109.46880 * 94.37029 * 25 23 21
27 27 H 1.48502 * 109.46930 * 214.36506 * 25 23 21
28 28 H 1.48493 * 109.47061 * 334.36946 * 25 23 21
29 29 H 1.08996 * 109.47100 * 180.02562 * 1 2 3
30 30 H 1.09003 * 109.47080 * 300.00474 * 1 2 3
31 31 H 1.09000 * 109.46735 * 60.00408 * 1 2 3
32 32 H 1.08001 * 119.41235 * 180.02562 * 5 4 3
33 33 H 1.08006 * 120.26776 * 180.02562 * 6 5 4
34 34 H 1.08005 * 120.82454 * 180.23376 * 7 6 5
35 35 H 0.97004 * 120.00156 * 0.02562 * 11 9 8
36 36 H 1.08994 * 109.47176 * 60.00051 * 12 11 9
37 37 H 1.09001 * 109.47566 * 300.00106 * 12 11 9
38 38 H 1.09001 * 109.33022 * 311.55166 * 15 13 12
39 39 H 1.09008 * 109.33261 * 71.03104 * 15 13 12
40 40 H 1.09004 * 108.51194 * 175.93656 * 16 15 13
41 41 H 1.09004 * 108.38703 * 58.36131 * 16 15 13
42 42 H 1.08999 * 109.49376 * 325.06169 * 17 16 15
43 43 H 1.09007 * 109.51173 * 205.00105 * 17 16 15
44 44 H 1.08997 * 109.37012 * 147.91677 * 18 17 16
45 45 H 1.09002 * 109.25917 * 28.23497 * 18 17 16
46 46 H 1.08994 * 108.94627 * 279.87530 * 19 18 17
47 47 H 1.08992 * 108.87634 * 161.19427 * 19 18 17
48 48 H 0.97000 * 119.99826 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0439 1.2067 0.0000
4 7 1.3198 2.3131 -0.0006
5 6 1.8771 3.5084 -0.0011
6 6 3.2526 3.6575 -0.0005
7 6 4.0588 2.5333 0.0051
8 6 3.4450 1.2752 -0.0002
9 6 4.2570 0.0436 0.0000
10 8 3.7126 -1.0436 0.0004
11 7 5.6024 0.1234 -0.0003
12 6 6.4088 -1.0997 0.0004
13 6 7.8938 -0.7315 0.0005
14 1 8.1407 -0.2211 0.9314
15 6 8.7445 -2.0197 -0.1226
16 6 10.1606 -1.7242 0.1440
17 6 10.7977 -0.7550 -0.8470
18 6 10.5172 0.6620 -0.4113
19 6 9.2277 1.1748 -1.0778
20 7 8.1731 0.1427 -1.1166
21 6 7.4282 0.0082 -2.2577
22 1 6.9986 -0.9495 -2.5122
23 6 7.2253 1.1024 -3.0872
24 7 7.4679 2.3179 -2.6444
25 14 6.6078 0.8500 -4.8321
26 1 5.1293 0.9869 -4.8586
27 1 7.2153 1.8696 -5.7246
28 1 6.9877 -0.5071 -5.3001
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.2485 4.3867 -0.0011
33 1 3.6934 4.6435 -0.0006
34 1 5.1350 2.6240 0.0094
35 1 6.0368 0.9907 -0.0003
36 1 6.1796 -1.6865 -0.8890
37 1 6.1800 -1.6853 0.8908
38 1 8.3883 -2.7574 0.5965
39 1 8.6437 -2.4238 -1.1300
40 1 10.7196 -2.6597 0.1213
41 1 10.2407 -1.2988 1.1444
42 1 10.3774 -0.9204 -1.8390
43 1 11.8749 -0.9199 -0.8763
44 1 11.3519 1.3009 -0.6997
45 1 10.3993 0.6884 0.6720
46 1 9.4559 1.4861 -2.0971
47 1 8.8602 2.0355 -0.5191
48 1 7.3264 3.0826 -3.2242
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000969011651.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:32:37
Heat of formation + Delta-G solvation = -14.805097 kcal
Electronic energy + Delta-G solvation = -30338.841488 eV
Core-core repulsion = 26394.890330 eV
Total energy + Delta-G solvation = -3943.951158 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.60744 -38.84351 -37.84407 -37.63934 -34.43276 -33.47549 -32.66471 -31.44518
-30.71917 -30.57144 -27.35160 -26.83940 -25.70047 -24.17840 -23.47536 -22.75259
-21.96451 -20.11184 -19.59851 -19.19765 -18.30631 -17.27462 -16.83190 -16.02466
-15.88534 -15.54260 -14.94808 -14.89382 -14.58840 -14.28413 -14.03501 -13.95736
-13.75308 -13.57521 -13.25963 -13.10588 -12.68975 -12.63670 -12.35355 -12.06778
-11.93011 -11.61082 -11.46682 -11.23616 -11.10090 -11.07534 -10.83978 -10.60188
-10.21628 -10.03753 -9.99231 -9.82033 -9.72538 -9.70979 -9.58602 -9.54666
-9.09656 -8.43974 -8.40309 -8.07041 -6.71805 -5.85172 -3.28203 0.93778
1.43889 3.25046 3.35019 3.39560 3.43088 3.46586 3.85927 4.19073
4.41232 4.47216 4.98895 5.07863 5.19361 5.22541 5.33356 5.35124
5.39571 5.43083 5.44002 5.50219 5.64303 5.68725 5.69832 5.90525
5.99995 6.06714 6.09054 6.15060 6.26740 6.34345 6.37919 6.50694
6.56605 6.62586 6.65216 6.70056 6.76243 6.83340 6.99263 7.10463
7.29376 7.38099 7.40586 7.62752 7.81711 7.88058 8.36537 8.41037
8.98706 9.18812 9.83166 10.28191 11.21763
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.012518 B = 0.004285 C = 0.003861
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2236.234749 B = 6532.960900 C = 7251.157212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.270 6.270
3 C 0.363 3.637
4 N -0.552 5.552
5 C 0.154 3.846
6 C -0.219 4.219
7 C 0.003 3.997
8 C -0.197 4.197
9 C 0.558 3.442
10 O -0.541 6.541
11 N -0.687 5.687
12 C 0.131 3.869
13 C 0.173 3.827
14 H 0.044 0.956
15 C -0.136 4.136
16 C -0.101 4.101
17 C -0.107 4.107
18 C -0.143 4.143
19 C 0.181 3.819
20 N -0.584 5.584
21 C -0.247 4.247
22 H 0.063 0.937
23 C 0.013 3.987
24 N -0.903 5.903
25 Si 0.889 3.111
26 H -0.289 1.289
27 H -0.291 1.291
28 H -0.280 1.280
29 H 0.095 0.905
30 H 0.055 0.945
31 H 0.056 0.944
32 H 0.160 0.840
33 H 0.141 0.859
34 H 0.152 0.848
35 H 0.408 0.592
36 H 0.068 0.932
37 H 0.050 0.950
38 H 0.048 0.952
39 H 0.063 0.937
40 H 0.040 0.960
41 H 0.046 0.954
42 H 0.074 0.926
43 H 0.039 0.961
44 H 0.048 0.952
45 H 0.043 0.957
46 H 0.073 0.927
47 H 0.023 0.977
48 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.982 1.588 7.630 8.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.174 6.174
3 C 0.183 3.817
4 N -0.276 5.276
5 C -0.003 4.003
6 C -0.239 4.239
7 C -0.023 4.023
8 C -0.203 4.203
9 C 0.344 3.656
10 O -0.420 6.420
11 N -0.337 5.337
12 C 0.007 3.993
13 C 0.064 3.936
14 H 0.062 0.938
15 C -0.177 4.177
16 C -0.138 4.138
17 C -0.144 4.144
18 C -0.182 4.182
19 C 0.056 3.944
20 N -0.306 5.306
21 C -0.376 4.376
22 H 0.080 0.920
23 C -0.185 4.185
24 N -0.548 5.548
25 Si 0.719 3.281
26 H -0.216 1.216
27 H -0.217 1.217
28 H -0.205 1.205
29 H 0.113 0.887
30 H 0.074 0.926
31 H 0.075 0.925
32 H 0.177 0.823
33 H 0.159 0.841
34 H 0.170 0.830
35 H 0.245 0.755
36 H 0.087 0.913
37 H 0.069 0.931
38 H 0.067 0.933
39 H 0.082 0.918
40 H 0.059 0.941
41 H 0.065 0.935
42 H 0.092 0.908
43 H 0.058 0.942
44 H 0.067 0.933
45 H 0.062 0.938
46 H 0.091 0.909
47 H 0.042 0.958
48 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -5.151 0.598 7.557 9.165
hybrid contribution 0.602 0.692 -1.203 1.512
sum -4.549 1.290 6.354 7.920
Atomic orbital electron populations
1.22885 0.78265 1.02868 1.01938 1.86555 1.21689 1.23170 1.85996
1.19855 0.88265 0.84907 0.88660 1.67400 1.40435 0.98699 1.21103
1.22535 0.93065 0.93570 0.91116 1.21917 0.94572 1.00051 1.07386
1.21849 1.01449 0.90347 0.88615 1.20183 0.91429 0.95627 1.13039
1.17657 0.82476 0.87854 0.77627 1.90755 1.72059 1.28365 1.50845
1.45551 1.04700 1.10959 1.72520 1.21470 0.90833 0.86442 1.00585
1.20518 0.90738 0.90958 0.91376 0.93769 1.21369 0.95799 0.98982
1.01541 1.20288 0.96365 0.98366 0.98801 1.20946 0.97767 0.95065
1.00653 1.22069 1.00099 0.96348 0.99685 1.20983 0.84246 0.88992
1.00131 1.43732 1.36561 1.38937 1.11339 1.19026 1.26420 0.93766
0.98414 0.91964 1.24863 0.99657 0.95129 0.98854 1.70015 1.52973
0.96943 1.34825 0.86491 0.78523 0.77384 0.85711 1.21642 1.21707
1.20545 0.88712 0.92587 0.92539 0.82326 0.84096 0.82995 0.75486
0.91341 0.93135 0.93285 0.91810 0.94101 0.93545 0.90768 0.94230
0.93275 0.93805 0.90904 0.95842 0.93811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.47 10.38 101.05 1.05 1.52 16
2 O -0.27 -4.94 8.58 -39.75 -0.34 -5.28 16
3 C 0.36 6.56 7.51 -16.61 -0.12 6.44 16
4 N -0.55 -8.62 9.21 -12.98 -0.12 -8.74 16
5 C 0.15 1.97 11.17 -17.49 -0.20 1.78 16
6 C -0.22 -2.87 10.09 -39.50 -0.40 -3.27 16
7 C 0.00 0.05 9.64 -38.89 -0.37 -0.32 16
8 C -0.20 -3.66 5.90 -104.69 -0.62 -4.28 16
9 C 0.56 11.65 7.77 -12.48 -0.10 11.55 16
10 O -0.54 -12.68 15.19 -16.48 -0.25 -12.93 16
11 N -0.69 -13.57 4.67 -61.36 -0.29 -13.85 16
12 C 0.13 2.52 4.52 -4.04 -0.02 2.50 16
13 C 0.17 3.18 2.19 -67.98 -0.15 3.03 16
14 H 0.04 0.79 8.06 -51.93 -0.42 0.38 16
15 C -0.14 -2.26 5.06 -28.58 -0.14 -2.40 16
16 C -0.10 -1.55 5.16 -29.79 -0.15 -1.70 16
17 C -0.11 -1.77 5.51 -28.02 -0.15 -1.92 16
18 C -0.14 -2.46 5.71 -27.30 -0.16 -2.61 16
19 C 0.18 3.77 4.66 -2.94 -0.01 3.76 16
20 N -0.58 -12.30 1.77 -164.47 -0.29 -12.59 16
21 C -0.25 -5.95 7.63 -15.06 -0.11 -6.06 16
22 H 0.06 1.60 6.74 -52.48 -0.35 1.24 16
23 C 0.01 0.34 4.85 -17.43 -0.08 0.25 16
24 N -0.90 -22.83 11.14 55.49 0.62 -22.22 16
25 Si 0.89 21.20 29.58 -169.99 -5.03 16.17 16
26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
30 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16
31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16
32 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16
33 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16
34 H 0.15 2.43 6.52 -52.48 -0.34 2.09 16
35 H 0.41 8.06 6.18 -40.82 -0.25 7.81 16
36 H 0.07 1.47 6.84 -51.93 -0.35 1.11 16
37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16
39 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16
40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
41 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16
42 H 0.07 1.42 7.48 -51.93 -0.39 1.03 16
43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
45 H 0.04 0.71 7.31 -51.93 -0.38 0.34 16
46 H 0.07 1.74 6.46 -51.93 -0.34 1.40 16
47 H 0.02 0.52 8.02 -51.93 -0.42 0.11 16
48 H 0.25 6.39 8.31 -40.82 -0.34 6.05 16
LS Contribution 377.76 15.07 5.69 5.69
Total: -1.00 -28.81 377.76 -9.16 -37.96
By element:
Atomic # 1 Polarization: 14.92 SS G_CDS: -7.40 Total: 7.51 kcal
Atomic # 6 Polarization: 10.01 SS G_CDS: -1.75 Total: 8.27 kcal
Atomic # 7 Polarization: -57.31 SS G_CDS: -0.08 Total: -57.39 kcal
Atomic # 8 Polarization: -17.62 SS G_CDS: -0.59 Total: -18.21 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -28.81 -9.16 -37.96 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969011651.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.159 kcal
(2) G-P(sol) polarization free energy of solvation -28.806 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.647 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.805 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds