Wall clock time and date at job start Tue Mar 31 2020 17:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35428 * 117.00108 * 2 1 4 4 N 1.32237 * 119.79717 * 359.97226 * 3 2 1 5 5 C 1.31881 * 121.80087 * 180.02562 * 4 3 2 6 6 C 1.38360 * 121.18085 * 359.97438 * 5 4 3 7 7 C 1.38332 * 119.46022 * 359.78469 * 6 5 4 8 8 C 1.39986 * 118.34944 * 0.47872 * 7 6 5 9 9 C 1.47522 * 120.59749 * 179.75442 * 8 7 6 10 10 O 1.21587 * 120.00144 * 179.72307 * 9 8 7 11 11 N 1.34774 * 120.00167 * 359.72371 * 9 8 7 12 12 C 1.46496 * 120.00211 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47324 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.42670 * 64.93340 * 13 12 11 15 15 C 1.54863 * 109.45076 * 184.86658 * 13 12 11 16 16 C 1.47098 * 110.32250 * 191.29262 * 15 13 12 17 17 C 1.52557 * 114.32816 * 297.19252 * 16 15 13 18 18 C 1.50882 * 109.35333 * 85.02756 * 17 16 15 19 19 C 1.53945 * 110.09380 * 268.11314 * 18 17 16 20 20 N 1.44575 * 109.45064 * 304.99749 * 13 12 11 21 21 C 1.36938 * 118.64427 * 329.27278 * 20 13 12 22 22 H 1.08003 * 119.99189 * 331.90710 * 21 20 13 23 23 C 1.38805 * 120.00311 * 151.91244 * 21 20 13 24 24 N 1.31621 * 120.00167 * 344.13809 * 23 21 20 25 25 Si 1.86808 * 119.99796 * 164.14264 * 23 21 20 26 26 H 1.48499 * 109.46880 * 94.37029 * 25 23 21 27 27 H 1.48502 * 109.46930 * 214.36506 * 25 23 21 28 28 H 1.48493 * 109.47061 * 334.36946 * 25 23 21 29 29 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47080 * 300.00474 * 1 2 3 31 31 H 1.09000 * 109.46735 * 60.00408 * 1 2 3 32 32 H 1.08001 * 119.41235 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.26776 * 180.02562 * 6 5 4 34 34 H 1.08005 * 120.82454 * 180.23376 * 7 6 5 35 35 H 0.97004 * 120.00156 * 0.02562 * 11 9 8 36 36 H 1.08994 * 109.47176 * 60.00051 * 12 11 9 37 37 H 1.09001 * 109.47566 * 300.00106 * 12 11 9 38 38 H 1.09001 * 109.33022 * 311.55166 * 15 13 12 39 39 H 1.09008 * 109.33261 * 71.03104 * 15 13 12 40 40 H 1.09004 * 108.51194 * 175.93656 * 16 15 13 41 41 H 1.09004 * 108.38703 * 58.36131 * 16 15 13 42 42 H 1.08999 * 109.49376 * 325.06169 * 17 16 15 43 43 H 1.09007 * 109.51173 * 205.00105 * 17 16 15 44 44 H 1.08997 * 109.37012 * 147.91677 * 18 17 16 45 45 H 1.09002 * 109.25917 * 28.23497 * 18 17 16 46 46 H 1.08994 * 108.94627 * 279.87530 * 19 18 17 47 47 H 1.08992 * 108.87634 * 161.19427 * 19 18 17 48 48 H 0.97000 * 119.99826 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3131 -0.0006 5 6 1.8771 3.5084 -0.0011 6 6 3.2526 3.6575 -0.0005 7 6 4.0588 2.5333 0.0051 8 6 3.4450 1.2752 -0.0002 9 6 4.2570 0.0436 0.0000 10 8 3.7126 -1.0436 0.0004 11 7 5.6024 0.1234 -0.0003 12 6 6.4088 -1.0997 0.0004 13 6 7.8938 -0.7315 0.0005 14 1 8.1407 -0.2211 0.9314 15 6 8.7445 -2.0197 -0.1226 16 6 10.1606 -1.7242 0.1440 17 6 10.7977 -0.7550 -0.8470 18 6 10.5172 0.6620 -0.4113 19 6 9.2277 1.1748 -1.0778 20 7 8.1731 0.1427 -1.1166 21 6 7.4282 0.0082 -2.2577 22 1 6.9986 -0.9495 -2.5122 23 6 7.2253 1.1024 -3.0872 24 7 7.4679 2.3179 -2.6444 25 14 6.6078 0.8500 -4.8321 26 1 5.1293 0.9869 -4.8586 27 1 7.2153 1.8696 -5.7246 28 1 6.9877 -0.5071 -5.3001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2485 4.3867 -0.0011 33 1 3.6934 4.6435 -0.0006 34 1 5.1350 2.6240 0.0094 35 1 6.0368 0.9907 -0.0003 36 1 6.1796 -1.6865 -0.8890 37 1 6.1800 -1.6853 0.8908 38 1 8.3883 -2.7574 0.5965 39 1 8.6437 -2.4238 -1.1300 40 1 10.7196 -2.6597 0.1213 41 1 10.2407 -1.2988 1.1444 42 1 10.3774 -0.9204 -1.8390 43 1 11.8749 -0.9199 -0.8763 44 1 11.3519 1.3009 -0.6997 45 1 10.3993 0.6884 0.6720 46 1 9.4559 1.4861 -2.0971 47 1 8.8602 2.0355 -0.5191 48 1 7.3264 3.0826 -3.2242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969011651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:36 Heat of formation + Delta-G solvation = -31.748600 kcal Electronic energy + Delta-G solvation = -30339.576213 eV Core-core repulsion = 26394.890330 eV Total energy + Delta-G solvation = -3944.685884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87460 -40.37652 -39.36538 -38.87413 -35.97146 -35.20188 -34.00237 -32.86471 -32.42958 -31.79555 -28.76752 -28.12914 -27.28467 -25.48288 -25.17091 -24.00725 -23.37364 -21.63661 -21.04382 -20.77239 -19.57800 -18.74036 -18.08275 -17.71929 -17.24971 -17.06821 -16.48133 -16.24723 -16.02024 -15.83528 -15.62813 -15.25714 -15.19434 -15.03428 -14.67624 -14.43661 -14.14941 -13.98690 -13.66777 -13.51579 -13.35776 -13.13888 -12.90331 -12.82676 -12.71169 -12.67970 -12.37428 -12.19411 -12.00243 -11.53098 -11.38116 -11.29969 -11.18740 -11.16627 -10.98792 -10.96562 -10.56275 -10.33524 -9.85063 -9.47647 -8.52373 -7.78633 -5.19822 -0.29839 0.24045 1.38112 1.44752 1.49243 1.96506 2.08920 2.38579 2.53819 2.85612 3.30168 3.36353 3.61986 3.83638 3.84072 4.00523 4.06847 4.11717 4.27110 4.30257 4.39869 4.40415 4.43950 4.49958 4.53449 4.63652 4.69289 4.69469 4.84720 4.92140 5.03530 5.09644 5.14201 5.15806 5.27711 5.28833 5.40394 5.41477 5.45199 5.57685 5.67397 5.71727 5.78571 5.82678 5.93010 6.22623 6.49685 6.66990 6.80166 7.29449 7.39078 8.02778 8.40742 9.24703 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.004285 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.234749 B = 6532.960900 C = 7251.157212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.348 3.652 4 N -0.555 5.555 5 C 0.165 3.835 6 C -0.208 4.208 7 C -0.003 4.003 8 C -0.232 4.232 9 C 0.553 3.447 10 O -0.577 6.577 11 N -0.685 5.685 12 C 0.134 3.866 13 C 0.174 3.826 14 H 0.059 0.941 15 C -0.128 4.128 16 C -0.100 4.100 17 C -0.104 4.104 18 C -0.133 4.133 19 C 0.190 3.810 20 N -0.587 5.587 21 C -0.231 4.231 22 H 0.043 0.957 23 C -0.019 4.019 24 N -0.910 5.910 25 Si 0.921 3.079 26 H -0.304 1.304 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.208 0.792 33 H 0.177 0.823 34 H 0.146 0.854 35 H 0.408 0.592 36 H 0.039 0.961 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.038 0.962 47 H 0.007 0.993 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 2.695 9.150 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.207 6.207 3 C 0.168 3.832 4 N -0.279 5.279 5 C 0.008 3.992 6 C -0.228 4.228 7 C -0.028 4.028 8 C -0.238 4.238 9 C 0.340 3.660 10 O -0.459 6.459 11 N -0.334 5.334 12 C 0.009 3.991 13 C 0.066 3.934 14 H 0.077 0.923 15 C -0.169 4.169 16 C -0.137 4.137 17 C -0.142 4.142 18 C -0.172 4.172 19 C 0.065 3.935 20 N -0.309 5.309 21 C -0.362 4.362 22 H 0.061 0.939 23 C -0.216 4.216 24 N -0.557 5.557 25 Si 0.753 3.247 26 H -0.232 1.232 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.225 0.775 33 H 0.194 0.806 34 H 0.164 0.836 35 H 0.245 0.755 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.025 0.975 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.734 1.695 9.087 10.386 hybrid contribution 0.415 0.387 -1.659 1.754 sum -4.320 2.081 7.428 8.841 Atomic orbital electron populations 1.23126 0.76084 1.04426 1.02590 1.86501 1.24098 1.24013 1.86092 1.19995 0.88270 0.85605 0.89285 1.67521 1.40207 0.98947 1.21274 1.23409 0.93708 0.93955 0.88116 1.22321 0.94602 1.00512 1.05379 1.21905 1.01522 0.90505 0.88917 1.20131 0.91872 0.95484 1.16310 1.18114 0.82740 0.88430 0.76735 1.90709 1.72652 1.29872 1.52708 1.45572 1.04647 1.10991 1.72176 1.21470 0.91465 0.86280 0.99845 1.20669 0.90373 0.91500 0.90819 0.92282 1.21283 0.96598 0.98054 1.00929 1.20271 0.95237 0.99175 0.99053 1.20910 0.99175 0.94887 0.99187 1.21948 0.98105 0.96918 1.00191 1.20785 0.85786 0.88629 0.98262 1.43763 1.36544 1.39304 1.11312 1.18893 1.25466 0.92585 0.99280 0.93944 1.25124 1.00935 0.95441 1.00117 1.70069 1.54055 0.96773 1.34762 0.85990 0.77136 0.76873 0.84677 1.23250 1.21654 1.21020 0.86828 0.91458 0.92207 0.77498 0.80552 0.83639 0.75506 0.94227 0.91691 0.91010 0.94101 0.92058 0.91920 0.94001 0.91886 0.92020 0.92122 0.94334 0.97505 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.38 113.37 1.18 2.02 16 2 O -0.30 -11.32 8.58 -66.42 -0.57 -11.89 16 3 C 0.35 12.65 7.51 85.13 0.64 13.29 16 4 N -0.55 -16.46 9.21 -308.00 -2.84 -19.29 16 5 C 0.16 3.70 11.17 84.71 0.95 4.64 16 6 C -0.21 -4.93 10.09 22.32 0.23 -4.70 16 7 C 0.00 -0.08 9.64 22.72 0.22 0.14 16 8 C -0.23 -8.83 5.90 -19.91 -0.12 -8.95 16 9 C 0.55 24.01 7.77 86.69 0.67 24.69 16 10 O -0.58 -28.35 15.19 16.83 0.26 -28.10 16 11 N -0.68 -27.87 4.67 -466.30 -2.18 -30.05 16 12 C 0.13 5.25 4.52 86.38 0.39 5.64 16 13 C 0.17 6.30 2.19 45.99 0.10 6.40 16 14 H 0.06 2.01 8.06 -2.39 -0.02 1.99 16 15 C -0.13 -4.05 5.06 29.40 0.15 -3.90 16 16 C -0.10 -2.77 5.16 28.61 0.15 -2.62 16 17 C -0.10 -3.21 5.51 29.76 0.16 -3.05 16 18 C -0.13 -4.29 5.71 30.22 0.17 -4.11 16 19 C 0.19 7.90 4.66 86.49 0.40 8.30 16 20 N -0.59 -24.94 1.77 -674.26 -1.20 -26.14 16 21 C -0.23 -11.48 7.63 84.03 0.64 -10.84 16 22 H 0.04 2.28 6.74 -2.91 -0.02 2.26 16 23 C -0.02 -1.00 4.85 84.86 0.41 -0.58 16 24 N -0.91 -46.89 11.14 21.65 0.24 -46.65 16 25 Si 0.92 44.60 29.58 68.60 2.03 46.63 16 26 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 29 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.06 1.47 8.10 -2.39 -0.02 1.46 16 32 H 0.21 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.15 4.70 6.52 -2.91 -0.02 4.68 16 35 H 0.41 16.53 6.18 -92.71 -0.57 15.96 16 36 H 0.04 1.78 6.84 -2.39 -0.02 1.76 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 39 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.58 7.35 -2.39 -0.02 1.56 16 42 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 43 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.78 7.31 -2.39 -0.02 1.76 16 46 H 0.04 1.86 6.46 -2.39 -0.02 1.84 16 47 H 0.01 0.31 8.02 -2.39 -0.02 0.29 16 48 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16 Total: -1.00 -65.55 377.76 2.48 -63.07 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.39 Total: 26.06 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 6.34 Total: 26.37 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -5.97 Total: -122.13 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.31 Total: -39.99 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.55 2.48 -63.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969011651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.316 kcal (2) G-P(sol) polarization free energy of solvation -65.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds