Wall clock time and date at job start Tue Mar 31 2020 17:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35670 * 117.00330 * 2 1 4 4 C 1.39286 * 119.61954 * 179.97438 * 3 2 1 5 5 C 1.38322 * 119.30314 * 180.02562 * 4 3 2 6 6 C 1.38781 * 118.56142 * 0.02562 * 5 4 3 7 7 C 1.39122 * 119.18763 * 359.97438 * 6 5 4 8 8 C 1.48153 * 119.68629 * 179.97438 * 7 6 5 9 9 O 1.21521 * 120.00541 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99820 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00197 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47460 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.44845 * 64.99819 * 12 11 10 14 14 C 1.54861 * 109.42897 * 184.93800 * 12 11 10 15 15 C 1.47097 * 110.32072 * 191.27746 * 14 12 11 16 16 C 1.52563 * 114.33181 * 297.18960 * 15 14 12 17 17 C 1.50887 * 109.34609 * 85.02589 * 16 15 14 18 18 C 1.53948 * 110.09154 * 268.11225 * 17 16 15 19 19 N 1.44582 * 109.44561 * 305.05558 * 12 11 10 20 20 C 1.36939 * 118.64397 * 329.29108 * 19 12 11 21 21 H 1.07998 * 119.99568 * 331.41552 * 20 19 12 22 22 C 1.38803 * 119.99797 * 151.41783 * 20 19 12 23 23 N 1.31619 * 120.00411 * 344.92280 * 22 20 19 24 24 Si 1.86809 * 119.99944 * 164.92589 * 22 20 19 25 25 H 1.48502 * 109.47025 * 59.99739 * 24 22 20 26 26 H 1.48494 * 109.47254 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46720 * 300.00106 * 24 22 20 28 28 N 1.31897 * 119.61223 * 0.29633 * 3 2 1 29 29 H 1.09001 * 109.47037 * 59.99592 * 1 2 3 30 30 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46983 * 299.99592 * 1 2 3 32 32 H 1.08000 * 120.34357 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.71638 * 180.02562 * 5 4 3 34 34 H 1.08010 * 120.40301 * 180.02562 * 6 5 4 35 35 H 0.97009 * 119.99800 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47388 * 60.00564 * 11 10 8 37 37 H 1.09004 * 109.47462 * 300.00478 * 11 10 8 38 38 H 1.09004 * 109.33033 * 311.53858 * 14 12 11 39 39 H 1.08997 * 109.33592 * 71.01744 * 14 12 11 40 40 H 1.09005 * 108.51284 * 175.93279 * 15 14 12 41 41 H 1.08998 * 108.38689 * 58.35426 * 15 14 12 42 42 H 1.08994 * 109.49058 * 325.06635 * 16 15 14 43 43 H 1.08993 * 109.51464 * 204.99889 * 16 15 14 44 44 H 1.08998 * 109.36432 * 147.92774 * 17 16 15 45 45 H 1.08999 * 109.26721 * 28.24154 * 17 16 15 46 46 H 1.08998 * 108.94769 * 279.87735 * 18 17 16 47 47 H 1.08999 * 108.87443 * 161.20454 * 18 17 16 48 48 H 0.96999 * 120.00196 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4364 1.2724 0.0005 5 6 4.0576 2.5082 0.0011 6 6 3.2666 3.6485 0.0016 7 6 1.8819 3.5136 0.0010 8 6 1.0268 4.7235 0.0022 9 8 1.5355 5.8271 0.0031 10 7 -0.3153 4.6001 0.0011 11 6 -1.1609 5.7964 0.0028 12 6 -2.6332 5.3803 0.0017 13 1 -2.8646 4.8621 0.9323 14 6 -3.5246 6.6406 -0.1222 15 6 -4.9308 6.2998 0.1429 16 6 -5.5356 5.3108 -0.8488 17 6 -5.2102 3.9035 -0.4128 18 6 -3.9042 3.4324 -1.0781 19 7 -2.8832 4.4976 -1.1158 20 6 -2.1418 4.6562 -2.2561 21 1 -1.7497 5.6288 -2.5143 22 6 -1.8944 3.5669 -3.0801 23 7 -2.1046 2.3454 -2.6371 24 14 -1.2629 3.8345 -4.8177 25 1 0.0379 4.5489 -4.7671 26 1 -1.0801 2.5210 -5.4857 27 1 -2.2442 4.6465 -5.5813 28 7 1.3192 2.3101 0.0059 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0240 0.3662 0.0005 33 1 5.1350 2.5841 0.0011 34 1 3.7204 4.6286 0.0016 35 1 -0.7214 3.7191 0.0000 36 1 -0.9505 6.3913 -0.8860 37 1 -0.9515 6.3881 0.8939 38 1 -3.1930 7.3893 0.5973 39 1 -3.4358 7.0478 -1.1294 40 1 -5.5195 7.2170 0.1197 41 1 -4.9982 5.8719 1.1431 42 1 -5.1198 5.4897 -1.8403 43 1 -6.6173 5.4411 -0.8792 44 1 -6.0236 3.2382 -0.7022 45 1 -5.0926 3.8807 0.6706 46 1 -4.1213 3.1140 -2.0977 47 1 -3.5099 2.5838 -0.5191 48 1 -1.9313 1.5842 -3.2128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969100834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:44 Heat of formation + Delta-G solvation = -16.251641 kcal Electronic energy + Delta-G solvation = -30581.633270 eV Core-core repulsion = 26637.619384 eV Total energy + Delta-G solvation = -3944.013885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.54027 -39.01637 -38.08802 -37.23165 -34.49829 -33.47139 -32.59843 -31.52192 -30.69889 -30.52850 -27.31901 -26.81767 -25.73087 -24.12055 -23.43396 -22.68061 -21.98145 -20.21434 -19.69402 -19.17154 -18.18007 -17.32248 -16.30198 -15.86398 -15.78616 -15.59173 -15.42021 -15.03599 -14.64353 -14.43274 -14.05581 -13.88081 -13.63506 -13.54313 -13.26280 -13.04004 -12.80707 -12.61962 -12.08853 -12.02260 -11.93786 -11.47472 -11.44606 -11.23929 -11.07374 -10.82762 -10.80723 -10.61198 -10.21116 -10.04337 -10.01691 -9.95814 -9.81521 -9.67907 -9.56686 -9.53717 -9.15495 -8.41453 -8.39587 -8.12851 -6.66453 -5.80386 -3.24119 0.91042 1.43675 3.22020 3.30403 3.37841 3.42221 3.46210 3.74932 4.20772 4.42112 4.49420 5.01392 5.13905 5.19480 5.21475 5.36414 5.42414 5.45750 5.51365 5.64392 5.65431 5.67692 5.79311 5.89464 6.01804 6.06610 6.10162 6.15092 6.20444 6.23678 6.32301 6.38522 6.49756 6.57148 6.62326 6.65893 6.71108 6.76100 6.84907 6.99869 7.10890 7.23611 7.40980 7.41746 7.66467 7.83890 7.89116 8.38091 8.44749 8.89017 9.22570 9.86867 10.32472 11.26092 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.004721 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.105889 B = 5929.464379 C = 6385.041621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.313 6.313 3 C 0.322 3.678 4 C -0.179 4.179 5 C -0.052 4.052 6 C -0.159 4.159 7 C 0.134 3.866 8 C 0.561 3.439 9 O -0.557 6.557 10 N -0.664 5.664 11 C 0.126 3.874 12 C 0.174 3.826 13 H 0.044 0.956 14 C -0.136 4.136 15 C -0.100 4.100 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.182 3.818 19 N -0.581 5.581 20 C -0.252 4.252 21 H 0.061 0.939 22 C 0.018 3.982 23 N -0.895 5.895 24 Si 0.889 3.111 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.285 1.285 28 N -0.498 5.498 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.422 0.578 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.024 0.976 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 -1.669 7.459 8.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.219 6.219 3 C 0.141 3.859 4 C -0.200 4.200 5 C -0.078 4.078 6 C -0.181 4.181 7 C -0.004 4.004 8 C 0.345 3.655 9 O -0.437 6.437 10 N -0.312 5.312 11 C 0.001 3.999 12 C 0.065 3.935 13 H 0.062 0.938 14 C -0.177 4.177 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.182 4.182 18 C 0.058 3.942 19 N -0.303 5.303 20 C -0.382 4.382 21 H 0.078 0.922 22 C -0.181 4.181 23 N -0.539 5.539 24 Si 0.719 3.281 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.212 1.212 28 N -0.224 5.224 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.260 0.740 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.091 0.909 47 H 0.042 0.958 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.031 -1.415 7.396 8.117 hybrid contribution 0.707 -0.246 -1.172 1.390 sum 3.737 -1.660 6.224 7.447 Atomic orbital electron populations 1.22975 0.75958 1.02719 1.04162 1.86171 1.23895 1.24151 1.87727 1.19794 0.89217 0.84785 0.92140 1.21207 0.92112 0.99583 1.07119 1.21343 1.00484 0.90977 0.94986 1.21943 0.93288 1.00527 1.02333 1.20983 0.92105 0.90623 0.96682 1.17785 0.82881 0.86944 0.77923 1.90715 1.74389 1.25870 1.52697 1.45592 1.04478 1.11882 1.69263 1.21571 0.90592 0.87049 1.00652 1.20502 0.90561 0.90974 0.91505 0.93804 1.21372 0.95876 0.98921 1.01502 1.20285 0.96416 0.98285 0.98816 1.20942 0.97736 0.95072 1.00639 1.22077 1.00135 0.96336 0.99671 1.20972 0.84437 0.88747 1.00076 1.43671 1.38904 1.36551 1.11215 1.18926 1.27509 0.93009 0.98749 0.92163 1.24868 0.99331 0.95262 0.98684 1.70003 1.52227 0.96833 1.34787 0.86590 0.78988 0.76697 0.85833 1.21111 1.21840 1.21181 1.67305 1.40587 0.98034 1.16441 0.89915 0.89160 0.92506 0.84099 0.83820 0.83511 0.73955 0.91138 0.92990 0.93328 0.91810 0.94117 0.93561 0.90762 0.94267 0.93322 0.93853 0.90943 0.95808 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 101.05 1.05 1.61 16 2 O -0.31 -5.04 10.48 -18.71 -0.20 -5.23 16 3 C 0.32 5.36 7.49 -17.13 -0.13 5.23 16 4 C -0.18 -2.39 10.05 -39.16 -0.39 -2.79 16 5 C -0.05 -0.65 10.16 -39.35 -0.40 -1.05 16 6 C -0.16 -2.45 9.63 -39.05 -0.38 -2.82 16 7 C 0.13 2.49 6.75 -83.03 -0.56 1.93 16 8 C 0.56 11.57 7.81 -12.19 -0.10 11.48 16 9 O -0.56 -12.31 16.32 5.35 0.09 -12.23 16 10 N -0.66 -13.59 4.70 -61.15 -0.29 -13.88 16 11 C 0.13 2.44 4.52 -4.04 -0.02 2.42 16 12 C 0.17 3.25 2.19 -67.97 -0.15 3.10 16 13 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 14 C -0.14 -2.26 5.06 -28.58 -0.14 -2.40 16 15 C -0.10 -1.56 5.16 -29.79 -0.15 -1.71 16 16 C -0.11 -1.78 5.51 -28.02 -0.15 -1.93 16 17 C -0.14 -2.50 5.71 -27.30 -0.16 -2.66 16 18 C 0.18 3.87 4.66 -2.94 -0.01 3.85 16 19 N -0.58 -12.46 1.77 -164.47 -0.29 -12.75 16 20 C -0.25 -6.16 7.61 -15.06 -0.11 -6.27 16 21 H 0.06 1.55 6.75 -52.49 -0.35 1.19 16 22 C 0.02 0.45 4.87 -17.43 -0.08 0.37 16 23 N -0.89 -22.92 11.13 55.49 0.62 -22.30 16 24 Si 0.89 21.39 29.58 -169.99 -5.03 16.36 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 28 N -0.50 -9.27 8.39 -9.88 -0.08 -9.35 16 29 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.15 2.11 7.63 -52.48 -0.40 1.71 16 35 H 0.42 9.14 7.40 -40.82 -0.30 8.84 16 36 H 0.07 1.50 6.85 -51.93 -0.36 1.14 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 42 H 0.07 1.43 7.48 -51.93 -0.39 1.05 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.72 7.31 -51.93 -0.38 0.34 16 46 H 0.07 1.75 6.47 -51.93 -0.34 1.41 16 47 H 0.02 0.54 8.01 -51.93 -0.42 0.13 16 48 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -27.36 382.15 -8.83 -36.18 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.51 Total: 9.09 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.89 Total: 8.36 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.04 Total: -58.29 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.11 Total: -17.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.36 -8.83 -36.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969100834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.933 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds