Wall clock time and date at job start Tue Mar 31 2020 17:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35670 * 117.00330 * 2 1 4 4 C 1.39286 * 119.61954 * 179.97438 * 3 2 1 5 5 C 1.38322 * 119.30314 * 180.02562 * 4 3 2 6 6 C 1.38781 * 118.56142 * 0.02562 * 5 4 3 7 7 C 1.39122 * 119.18763 * 359.97438 * 6 5 4 8 8 C 1.48153 * 119.68629 * 179.97438 * 7 6 5 9 9 O 1.21521 * 120.00541 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99820 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00197 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47460 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.44845 * 64.99819 * 12 11 10 14 14 C 1.54861 * 109.42897 * 184.93800 * 12 11 10 15 15 C 1.47097 * 110.32072 * 191.27746 * 14 12 11 16 16 C 1.52563 * 114.33181 * 297.18960 * 15 14 12 17 17 C 1.50887 * 109.34609 * 85.02589 * 16 15 14 18 18 C 1.53948 * 110.09154 * 268.11225 * 17 16 15 19 19 N 1.44582 * 109.44561 * 305.05558 * 12 11 10 20 20 C 1.36939 * 118.64397 * 329.29108 * 19 12 11 21 21 H 1.07998 * 119.99568 * 331.41552 * 20 19 12 22 22 C 1.38803 * 119.99797 * 151.41783 * 20 19 12 23 23 N 1.31619 * 120.00411 * 344.92280 * 22 20 19 24 24 Si 1.86809 * 119.99944 * 164.92589 * 22 20 19 25 25 H 1.48502 * 109.47025 * 59.99739 * 24 22 20 26 26 H 1.48494 * 109.47254 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46720 * 300.00106 * 24 22 20 28 28 N 1.31897 * 119.61223 * 0.29633 * 3 2 1 29 29 H 1.09001 * 109.47037 * 59.99592 * 1 2 3 30 30 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46983 * 299.99592 * 1 2 3 32 32 H 1.08000 * 120.34357 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.71638 * 180.02562 * 5 4 3 34 34 H 1.08010 * 120.40301 * 180.02562 * 6 5 4 35 35 H 0.97009 * 119.99800 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47388 * 60.00564 * 11 10 8 37 37 H 1.09004 * 109.47462 * 300.00478 * 11 10 8 38 38 H 1.09004 * 109.33033 * 311.53858 * 14 12 11 39 39 H 1.08997 * 109.33592 * 71.01744 * 14 12 11 40 40 H 1.09005 * 108.51284 * 175.93279 * 15 14 12 41 41 H 1.08998 * 108.38689 * 58.35426 * 15 14 12 42 42 H 1.08994 * 109.49058 * 325.06635 * 16 15 14 43 43 H 1.08993 * 109.51464 * 204.99889 * 16 15 14 44 44 H 1.08998 * 109.36432 * 147.92774 * 17 16 15 45 45 H 1.08999 * 109.26721 * 28.24154 * 17 16 15 46 46 H 1.08998 * 108.94769 * 279.87735 * 18 17 16 47 47 H 1.08999 * 108.87443 * 161.20454 * 18 17 16 48 48 H 0.96999 * 120.00196 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4364 1.2724 0.0005 5 6 4.0576 2.5082 0.0011 6 6 3.2666 3.6485 0.0016 7 6 1.8819 3.5136 0.0010 8 6 1.0268 4.7235 0.0022 9 8 1.5355 5.8271 0.0031 10 7 -0.3153 4.6001 0.0011 11 6 -1.1609 5.7964 0.0028 12 6 -2.6332 5.3803 0.0017 13 1 -2.8646 4.8621 0.9323 14 6 -3.5246 6.6406 -0.1222 15 6 -4.9308 6.2998 0.1429 16 6 -5.5356 5.3108 -0.8488 17 6 -5.2102 3.9035 -0.4128 18 6 -3.9042 3.4324 -1.0781 19 7 -2.8832 4.4976 -1.1158 20 6 -2.1418 4.6562 -2.2561 21 1 -1.7497 5.6288 -2.5143 22 6 -1.8944 3.5669 -3.0801 23 7 -2.1046 2.3454 -2.6371 24 14 -1.2629 3.8345 -4.8177 25 1 0.0379 4.5489 -4.7671 26 1 -1.0801 2.5210 -5.4857 27 1 -2.2442 4.6465 -5.5813 28 7 1.3192 2.3101 0.0059 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0240 0.3662 0.0005 33 1 5.1350 2.5841 0.0011 34 1 3.7204 4.6286 0.0016 35 1 -0.7214 3.7191 0.0000 36 1 -0.9505 6.3913 -0.8860 37 1 -0.9515 6.3881 0.8939 38 1 -3.1930 7.3893 0.5973 39 1 -3.4358 7.0478 -1.1294 40 1 -5.5195 7.2170 0.1197 41 1 -4.9982 5.8719 1.1431 42 1 -5.1198 5.4897 -1.8403 43 1 -6.6173 5.4411 -0.8792 44 1 -6.0236 3.2382 -0.7022 45 1 -5.0926 3.8807 0.6706 46 1 -4.1213 3.1140 -2.0977 47 1 -3.5099 2.5838 -0.5191 48 1 -1.9313 1.5842 -3.2128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969100834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:43 Heat of formation + Delta-G solvation = -33.118045 kcal Electronic energy + Delta-G solvation = -30582.364652 eV Core-core repulsion = 26637.619384 eV Total energy + Delta-G solvation = -3944.745267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81698 -40.53131 -39.58711 -38.53847 -36.04097 -35.21624 -33.87102 -32.97491 -32.44064 -31.81269 -28.83753 -28.18555 -27.34549 -25.46546 -25.15525 -23.89255 -23.43660 -21.72550 -21.13023 -20.78068 -19.57241 -18.68616 -17.99058 -17.30625 -17.02587 -16.98837 -16.81677 -16.64232 -16.25723 -15.97248 -15.75514 -15.20374 -15.10470 -15.04367 -14.63693 -14.45350 -14.17448 -14.05212 -13.67607 -13.39215 -13.17709 -13.15540 -12.90505 -12.82158 -12.71441 -12.65644 -12.41810 -12.12953 -12.01845 -11.54665 -11.51792 -11.38326 -11.30884 -11.19677 -10.98362 -10.96074 -10.53671 -10.33182 -9.89256 -9.53579 -8.50185 -7.76844 -5.18931 -0.34145 0.29282 1.38389 1.42064 1.45095 1.77625 2.11468 2.30332 2.52777 2.87210 3.10678 3.38109 3.61682 3.91248 3.98883 4.05171 4.06098 4.09116 4.27241 4.28833 4.43060 4.46246 4.49684 4.52354 4.53620 4.61344 4.66812 4.79357 4.90335 4.97766 5.01882 5.07438 5.11569 5.14157 5.26250 5.27709 5.39137 5.39328 5.43456 5.56067 5.62343 5.69229 5.77049 5.81012 5.91702 6.16499 6.49183 6.54271 6.83391 7.26606 7.29890 8.03185 8.42170 9.25723 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.004721 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.105889 B = 5929.464379 C = 6385.041621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.313 6.313 3 C 0.295 3.705 4 C -0.162 4.162 5 C -0.035 4.035 6 C -0.155 4.155 7 C 0.095 3.905 8 C 0.555 3.445 9 O -0.581 6.581 10 N -0.669 5.669 11 C 0.128 3.872 12 C 0.173 3.827 13 H 0.053 0.947 14 C -0.127 4.127 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.132 4.132 18 C 0.192 3.808 19 N -0.585 5.585 20 C -0.237 4.237 21 H 0.045 0.955 22 C -0.019 4.019 23 N -0.903 5.903 24 Si 0.924 3.076 25 H -0.297 1.297 26 H -0.297 1.297 27 H -0.284 1.284 28 N -0.526 5.526 29 H 0.044 0.956 30 H 0.121 0.879 31 H 0.051 0.949 32 H 0.178 0.822 33 H 0.196 0.804 34 H 0.154 0.846 35 H 0.415 0.585 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.001 0.999 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -1.745 8.972 10.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.221 6.221 3 C 0.113 3.887 4 C -0.182 4.182 5 C -0.060 4.060 6 C -0.177 4.177 7 C -0.041 4.041 8 C 0.340 3.660 9 O -0.463 6.463 10 N -0.316 5.316 11 C 0.004 3.996 12 C 0.065 3.935 13 H 0.071 0.929 14 C -0.167 4.167 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.171 4.171 18 C 0.068 3.932 19 N -0.308 5.308 20 C -0.368 4.368 21 H 0.063 0.937 22 C -0.217 4.217 23 N -0.548 5.548 24 Si 0.756 3.244 25 H -0.225 1.225 26 H -0.223 1.223 27 H -0.211 1.211 28 N -0.252 5.252 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.213 0.787 34 H 0.172 0.828 35 H 0.252 0.748 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.019 0.981 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.733 -1.462 8.919 9.779 hybrid contribution 0.560 -0.225 -1.614 1.723 sum 4.294 -1.687 7.305 8.640 Atomic orbital electron populations 1.22867 0.76035 1.03991 1.01936 1.86171 1.23781 1.24123 1.87985 1.20304 0.90690 0.84336 0.93381 1.21711 0.90730 1.01540 1.04219 1.21891 1.02585 0.89132 0.92356 1.22193 0.92159 1.02231 1.01122 1.20824 0.93155 0.89860 1.00261 1.18240 0.83009 0.87687 0.77074 1.90673 1.74714 1.26922 1.53944 1.45676 1.04869 1.11659 1.69382 1.21597 0.90974 0.86778 1.00274 1.20675 0.90604 0.91520 0.90670 0.92902 1.21273 0.96399 0.97937 1.01099 1.20271 0.95485 0.99049 0.98933 1.20900 0.99189 0.94725 0.99238 1.21944 0.97951 0.97184 1.00036 1.20741 0.86147 0.88231 0.98110 1.43704 1.38860 1.36900 1.11287 1.18837 1.26510 0.91941 0.99492 0.93735 1.25202 1.00688 0.95550 1.00233 1.70093 1.53398 0.96676 1.34672 0.86039 0.77939 0.75955 0.84493 1.22479 1.22305 1.21080 1.67117 1.42012 0.98656 1.17417 0.93757 0.86091 0.93042 0.80463 0.78668 0.82815 0.74786 0.93593 0.91155 0.90817 0.93850 0.91864 0.92126 0.93911 0.91845 0.92084 0.92371 0.94341 0.98132 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.47 10.38 113.37 1.18 2.65 16 2 O -0.31 -9.97 10.48 -89.87 -0.94 -10.91 16 3 C 0.29 9.62 7.49 84.94 0.64 10.25 16 4 C -0.16 -3.82 10.05 22.54 0.23 -3.59 16 5 C -0.03 -0.73 10.16 22.42 0.23 -0.51 16 6 C -0.16 -4.56 9.63 22.61 0.22 -4.34 16 7 C 0.10 3.59 6.75 41.84 0.28 3.88 16 8 C 0.55 23.67 7.81 86.88 0.68 24.35 16 9 O -0.58 -26.35 16.32 -3.78 -0.06 -26.41 16 10 N -0.67 -28.47 4.70 -465.67 -2.19 -30.66 16 11 C 0.13 5.06 4.52 86.38 0.39 5.45 16 12 C 0.17 6.46 2.19 45.99 0.10 6.56 16 13 H 0.05 1.90 8.06 -2.39 -0.02 1.89 16 14 C -0.13 -4.02 5.06 29.39 0.15 -3.87 16 15 C -0.10 -2.81 5.16 28.61 0.15 -2.67 16 16 C -0.10 -3.25 5.51 29.76 0.16 -3.09 16 17 C -0.13 -4.45 5.71 30.23 0.17 -4.28 16 18 C 0.19 8.36 4.66 86.49 0.40 8.76 16 19 N -0.59 -25.72 1.77 -674.25 -1.20 -26.92 16 20 C -0.24 -12.02 7.61 84.03 0.64 -11.38 16 21 H 0.04 2.40 6.75 -2.91 -0.02 2.38 16 22 C -0.02 -1.02 4.87 84.86 0.41 -0.61 16 23 N -0.90 -48.43 11.13 21.65 0.24 -48.18 16 24 Si 0.92 45.45 29.58 68.60 2.03 47.48 16 25 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 26 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 27 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 28 N -0.53 -20.05 8.39 -298.21 -2.50 -22.55 16 29 H 0.04 1.74 8.11 -2.39 -0.02 1.72 16 30 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.20 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.15 4.23 7.63 -2.91 -0.02 4.21 16 35 H 0.42 18.88 7.40 -92.70 -0.69 18.19 16 36 H 0.05 2.03 6.85 -2.39 -0.02 2.01 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.07 1.99 8.11 -2.38 -0.02 1.97 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.06 1.57 7.35 -2.39 -0.02 1.56 16 42 H 0.04 1.63 7.48 -2.39 -0.02 1.61 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 45 H 0.06 1.80 7.31 -2.39 -0.02 1.79 16 46 H 0.04 1.92 6.47 -2.39 -0.02 1.90 16 47 H 0.00 0.03 8.01 -2.39 -0.02 0.01 16 48 H 0.24 13.13 8.31 -92.71 -0.77 12.36 16 Total: -1.00 -63.53 382.15 1.68 -61.84 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.28 Total: 28.74 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 6.03 Total: 27.56 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -5.65 Total: -128.30 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.00 Total: -37.32 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -63.53 1.68 -61.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969100834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.727 kcal (2) G-P(sol) polarization free energy of solvation -63.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds