Wall clock time and date at job start Tue Mar 31 2020 17:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35650 * 117.00180 * 2 1 4 4 C 1.39345 * 120.53809 * 0.27525 * 3 2 1 5 5 C 1.38301 * 118.43919 * 180.26142 * 4 3 2 6 6 C 1.38768 * 119.44426 * 359.72647 * 5 4 3 7 7 N 1.31373 * 121.06666 * 359.97438 * 6 5 4 8 8 C 1.32857 * 121.69798 * 0.02562 * 7 6 5 9 9 C 1.47828 * 119.78536 * 179.97438 * 8 7 6 10 10 O 1.21559 * 120.00167 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00036 * 359.97438 * 9 8 7 12 12 C 1.46497 * 120.00200 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47426 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.42111 * 295.06557 * 13 12 11 15 15 C 1.54868 * 109.44979 * 175.13422 * 13 12 11 16 16 C 1.47028 * 110.32388 * 168.68066 * 15 13 12 17 17 C 1.52567 * 114.31638 * 62.83962 * 16 15 13 18 18 C 1.50882 * 109.35186 * 274.95226 * 17 16 15 19 19 C 1.53948 * 110.09436 * 91.88456 * 18 17 16 20 20 N 1.44573 * 109.44766 * 54.99846 * 13 12 11 21 21 C 1.36942 * 118.64113 * 30.75912 * 20 13 12 22 22 H 1.07994 * 120.00042 * 27.74383 * 21 20 13 23 23 C 1.38815 * 119.99860 * 207.73863 * 21 20 13 24 24 N 1.31621 * 119.99921 * 14.57370 * 23 21 20 25 25 Si 1.86793 * 119.99979 * 194.56581 * 23 21 20 26 26 H 1.48498 * 109.47114 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47150 * 120.00568 * 25 23 21 28 28 H 1.48505 * 109.47595 * 240.00322 * 25 23 21 29 29 H 1.08997 * 109.47188 * 299.99461 * 1 2 3 30 30 H 1.09000 * 109.47067 * 60.00205 * 1 2 3 31 31 H 1.09003 * 109.47095 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.77900 * 359.96705 * 4 3 2 33 33 H 1.07998 * 120.28353 * 179.74948 * 5 4 3 34 34 H 1.08005 * 119.46706 * 180.02562 * 6 5 4 35 35 H 0.96999 * 119.99754 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.47053 * 59.99949 * 12 11 9 37 37 H 1.08998 * 109.47516 * 300.00011 * 12 11 9 38 38 H 1.09004 * 109.32854 * 288.96813 * 15 13 12 39 39 H 1.09001 * 109.32911 * 48.44676 * 15 13 12 40 40 H 1.08996 * 108.54114 * 301.57901 * 16 15 13 41 41 H 1.08999 * 108.38391 * 183.98745 * 16 15 13 42 42 H 1.09001 * 109.49458 * 154.98879 * 17 16 15 43 43 H 1.09001 * 109.51194 * 34.92646 * 17 16 15 44 44 H 1.09000 * 109.36497 * 331.69457 * 18 17 16 45 45 H 1.08998 * 109.26406 * 212.01662 * 18 17 16 46 46 H 1.08996 * 108.94222 * 198.75326 * 19 18 17 47 47 H 1.08995 * 108.87124 * 80.07884 * 19 18 17 48 48 H 0.96997 * 120.00225 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0058 5 6 1.9695 3.5928 0.0000 6 6 3.3572 3.6011 -0.0055 7 7 4.0419 2.4799 -0.0048 8 6 3.4410 1.2950 0.0006 9 6 4.2531 0.0598 0.0006 10 8 3.7074 -1.0264 0.0061 11 7 5.5986 0.1379 -0.0055 12 6 6.4034 -1.0861 -0.0049 13 6 7.8890 -0.7198 -0.0132 14 1 8.1322 -0.2135 -0.9473 15 6 8.7386 -2.0087 0.1113 16 6 10.1531 -1.7164 -0.1634 17 6 10.7964 -0.7443 0.8210 18 6 10.5160 0.6714 0.3811 19 6 9.2303 1.1888 1.0515 20 7 8.1743 0.1586 1.0991 21 6 7.4347 0.0291 2.2443 22 1 7.0008 -0.9257 2.5018 23 6 7.2427 1.1252 3.0741 24 7 7.5143 2.3368 2.6374 25 14 6.5988 0.8808 4.8104 26 1 6.3737 -0.5664 5.0557 27 1 7.5928 1.3988 5.7845 28 1 5.3184 1.6156 4.9717 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2174 2.3527 0.0098 33 1 1.4195 4.5222 0.0001 34 1 3.8828 4.5447 -0.0096 35 1 6.0340 1.0047 -0.0102 36 1 6.1699 -1.6749 -0.8919 37 1 6.1776 -1.6691 0.8879 38 1 8.6418 -2.4085 1.1207 39 1 8.3782 -2.7488 -0.6033 40 1 10.2318 -1.2961 -1.1660 41 1 10.7091 -2.6535 -0.1376 42 1 11.8733 -0.9110 0.8456 43 1 10.3807 -0.9052 1.8157 44 1 10.3940 0.6960 -0.7018 45 1 11.3534 1.3088 0.6650 46 1 8.8611 2.0486 0.4925 47 1 9.4648 1.5025 2.0687 48 1 7.3798 3.1028 3.2171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969126396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:09 Heat of formation + Delta-G solvation = -11.264034 kcal Electronic energy + Delta-G solvation = -30320.082342 eV Core-core repulsion = 26376.284736 eV Total energy + Delta-G solvation = -3943.797606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.64906 -38.73482 -38.02706 -37.66964 -34.32905 -33.35233 -32.37542 -31.40597 -30.64904 -30.51530 -27.52402 -26.91405 -25.65488 -24.16682 -23.35232 -22.72965 -21.92585 -20.05801 -19.58913 -19.07690 -18.14846 -17.33761 -16.93555 -16.00881 -15.87458 -15.46240 -15.05787 -14.78903 -14.49391 -14.32422 -14.21615 -13.97151 -13.65903 -13.48240 -13.35083 -13.13001 -12.74959 -12.56373 -12.38152 -11.96184 -11.84715 -11.47070 -11.44344 -11.36251 -11.13922 -10.98810 -10.78998 -10.48949 -10.11736 -9.94525 -9.90591 -9.74024 -9.69864 -9.59561 -9.48203 -9.43943 -9.05624 -8.35908 -8.31064 -7.94932 -6.57767 -5.70315 -3.13673 0.90457 1.36680 3.22912 3.31890 3.40928 3.49732 3.52537 3.86992 4.27358 4.55825 4.58063 4.66487 4.83250 5.02393 5.06301 5.14131 5.30363 5.30894 5.41159 5.45224 5.52610 5.58594 5.71060 5.73514 5.96032 6.01878 6.03134 6.11838 6.18828 6.24414 6.40453 6.45468 6.48749 6.65773 6.71097 6.73347 6.79810 6.84278 6.92729 7.08571 7.18989 7.29046 7.41747 7.51847 7.77895 7.93506 8.01464 8.53551 8.56625 9.09726 9.31989 9.96602 10.41700 11.36466 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.004308 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.376482 B = 6498.458198 C = 7216.918752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.271 6.271 3 C 0.127 3.873 4 C -0.181 4.181 5 C -0.118 4.118 6 C 0.060 3.940 7 N -0.400 5.400 8 C 0.059 3.941 9 C 0.563 3.437 10 O -0.543 6.543 11 N -0.670 5.670 12 C 0.128 3.872 13 C 0.174 3.826 14 H 0.044 0.956 15 C -0.136 4.136 16 C -0.100 4.100 17 C -0.106 4.106 18 C -0.143 4.143 19 C 0.182 3.818 20 N -0.582 5.582 21 C -0.249 4.249 22 H 0.062 0.938 23 C 0.015 3.985 24 N -0.895 5.895 25 Si 0.888 3.112 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.294 1.294 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.421 0.579 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.025 0.975 47 H 0.074 0.926 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 1.109 -7.665 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.076 3.924 4 C -0.208 4.208 5 C -0.138 4.138 6 C -0.100 4.100 7 N -0.111 5.111 8 C -0.080 4.080 9 C 0.347 3.653 10 O -0.421 6.421 11 N -0.319 5.319 12 C 0.004 3.996 13 C 0.065 3.935 14 H 0.062 0.938 15 C -0.177 4.177 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.182 4.182 19 C 0.057 3.943 20 N -0.304 5.304 21 C -0.378 4.378 22 H 0.080 0.920 23 C -0.184 4.184 24 N -0.539 5.539 25 Si 0.719 3.281 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.221 1.221 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.092 0.908 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.330 0.281 -7.593 10.558 hybrid contribution -1.379 0.686 1.187 1.945 sum -8.709 0.967 -6.406 10.854 Atomic orbital electron populations 1.23157 0.79256 1.04291 1.00870 1.86445 1.20279 1.24683 1.86702 1.20097 0.92508 0.85525 0.94250 1.21651 1.00648 0.91970 1.06490 1.22152 0.95885 0.98120 0.97625 1.22737 0.91081 0.96716 0.99497 1.67780 1.39421 0.97203 1.06726 1.20959 0.88391 0.93417 1.05266 1.17526 0.82783 0.86808 0.78180 1.90756 1.72161 1.27538 1.51682 1.45543 1.04523 1.11519 1.70354 1.21515 0.91098 0.86519 1.00496 1.20498 0.90600 0.90891 0.91556 0.93786 1.21363 0.95838 0.99026 1.01465 1.20272 0.96378 0.98280 0.98841 1.20947 0.97632 0.95116 1.00692 1.22078 1.00184 0.96285 0.99677 1.20991 0.84142 0.89025 1.00156 1.43694 1.36674 1.38820 1.11229 1.19023 1.26893 0.93790 0.98139 0.92001 1.24884 0.99693 0.95158 0.98697 1.70040 1.52350 0.96938 1.34538 0.86437 0.78082 0.77596 0.85989 1.20435 1.21799 1.22104 0.92782 0.92836 0.87933 0.84131 0.84407 0.82029 0.74084 0.93183 0.91350 0.91834 0.93363 0.93544 0.94196 0.94315 0.90766 0.93847 0.93359 0.95725 0.90804 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.83 101.05 0.99 1.20 16 2 O -0.27 -4.53 8.56 -40.60 -0.35 -4.87 16 3 C 0.13 2.13 6.71 -38.55 -0.26 1.87 16 4 C -0.18 -2.30 9.13 -39.15 -0.36 -2.65 16 5 C -0.12 -1.39 10.10 -39.36 -0.40 -1.79 16 6 C 0.06 0.88 11.17 -17.55 -0.20 0.68 16 7 N -0.40 -7.54 9.54 -9.71 -0.09 -7.63 16 8 C 0.06 1.17 6.76 -82.88 -0.56 0.61 16 9 C 0.56 12.44 7.80 -12.34 -0.10 12.34 16 10 O -0.54 -12.90 15.14 -16.64 -0.25 -13.15 16 11 N -0.67 -14.54 4.71 -61.26 -0.29 -14.82 16 12 C 0.13 2.62 4.52 -4.04 -0.02 2.61 16 13 C 0.17 3.42 2.19 -67.97 -0.15 3.27 16 14 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 15 C -0.14 -2.37 5.06 -28.61 -0.14 -2.51 16 16 C -0.10 -1.62 5.15 -29.82 -0.15 -1.77 16 17 C -0.11 -1.85 5.51 -28.02 -0.15 -2.00 16 18 C -0.14 -2.62 5.71 -27.30 -0.16 -2.78 16 19 C 0.18 4.05 4.66 -2.94 -0.01 4.04 16 20 N -0.58 -13.13 1.78 -164.47 -0.29 -13.42 16 21 C -0.25 -6.34 7.65 -15.06 -0.12 -6.45 16 22 H 0.06 1.66 6.71 -52.49 -0.35 1.30 16 23 C 0.01 0.39 4.89 -17.43 -0.09 0.30 16 24 N -0.89 -24.28 11.03 55.49 0.61 -23.67 16 25 Si 0.89 22.03 29.58 -169.99 -5.03 17.00 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H 0.05 0.48 7.69 -51.93 -0.40 0.08 16 30 H 0.05 0.44 7.71 -51.93 -0.40 0.04 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.14 1.28 6.46 -52.49 -0.34 0.94 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 35 H 0.42 9.65 7.41 -40.82 -0.30 9.35 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.53 6.83 -51.93 -0.35 1.18 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 40 H 0.05 0.72 7.36 -51.93 -0.38 0.34 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.48 7.48 -51.93 -0.39 1.09 16 44 H 0.04 0.76 7.32 -51.93 -0.38 0.38 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.02 0.60 8.02 -51.93 -0.42 0.18 16 47 H 0.07 1.86 6.40 -51.93 -0.33 1.53 16 48 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -30.83 377.32 -9.27 -40.10 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.40 Total: 7.82 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.86 Total: 6.97 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.06 Total: -59.55 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.60 Total: -18.03 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.83 -9.27 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969126396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.834 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds