Wall clock time and date at job start Tue Mar 31 2020 17:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35650 * 117.00180 * 2 1 4 4 C 1.39345 * 120.53809 * 0.27525 * 3 2 1 5 5 C 1.38301 * 118.43919 * 180.26142 * 4 3 2 6 6 C 1.38768 * 119.44426 * 359.72647 * 5 4 3 7 7 N 1.31373 * 121.06666 * 359.97438 * 6 5 4 8 8 C 1.32857 * 121.69798 * 0.02562 * 7 6 5 9 9 C 1.47828 * 119.78536 * 179.97438 * 8 7 6 10 10 O 1.21559 * 120.00167 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00036 * 359.97438 * 9 8 7 12 12 C 1.46497 * 120.00200 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47426 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.42111 * 295.06557 * 13 12 11 15 15 C 1.54868 * 109.44979 * 175.13422 * 13 12 11 16 16 C 1.47028 * 110.32388 * 168.68066 * 15 13 12 17 17 C 1.52567 * 114.31638 * 62.83962 * 16 15 13 18 18 C 1.50882 * 109.35186 * 274.95226 * 17 16 15 19 19 C 1.53948 * 110.09436 * 91.88456 * 18 17 16 20 20 N 1.44573 * 109.44766 * 54.99846 * 13 12 11 21 21 C 1.36942 * 118.64113 * 30.75912 * 20 13 12 22 22 H 1.07994 * 120.00042 * 27.74383 * 21 20 13 23 23 C 1.38815 * 119.99860 * 207.73863 * 21 20 13 24 24 N 1.31621 * 119.99921 * 14.57370 * 23 21 20 25 25 Si 1.86793 * 119.99979 * 194.56581 * 23 21 20 26 26 H 1.48498 * 109.47114 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47150 * 120.00568 * 25 23 21 28 28 H 1.48505 * 109.47595 * 240.00322 * 25 23 21 29 29 H 1.08997 * 109.47188 * 299.99461 * 1 2 3 30 30 H 1.09000 * 109.47067 * 60.00205 * 1 2 3 31 31 H 1.09003 * 109.47095 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.77900 * 359.96705 * 4 3 2 33 33 H 1.07998 * 120.28353 * 179.74948 * 5 4 3 34 34 H 1.08005 * 119.46706 * 180.02562 * 6 5 4 35 35 H 0.96999 * 119.99754 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.47053 * 59.99949 * 12 11 9 37 37 H 1.08998 * 109.47516 * 300.00011 * 12 11 9 38 38 H 1.09004 * 109.32854 * 288.96813 * 15 13 12 39 39 H 1.09001 * 109.32911 * 48.44676 * 15 13 12 40 40 H 1.08996 * 108.54114 * 301.57901 * 16 15 13 41 41 H 1.08999 * 108.38391 * 183.98745 * 16 15 13 42 42 H 1.09001 * 109.49458 * 154.98879 * 17 16 15 43 43 H 1.09001 * 109.51194 * 34.92646 * 17 16 15 44 44 H 1.09000 * 109.36497 * 331.69457 * 18 17 16 45 45 H 1.08998 * 109.26406 * 212.01662 * 18 17 16 46 46 H 1.08996 * 108.94222 * 198.75326 * 19 18 17 47 47 H 1.08995 * 108.87124 * 80.07884 * 19 18 17 48 48 H 0.96997 * 120.00225 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0058 5 6 1.9695 3.5928 0.0000 6 6 3.3572 3.6011 -0.0055 7 7 4.0419 2.4799 -0.0048 8 6 3.4410 1.2950 0.0006 9 6 4.2531 0.0598 0.0006 10 8 3.7074 -1.0264 0.0061 11 7 5.5986 0.1379 -0.0055 12 6 6.4034 -1.0861 -0.0049 13 6 7.8890 -0.7198 -0.0132 14 1 8.1322 -0.2135 -0.9473 15 6 8.7386 -2.0087 0.1113 16 6 10.1531 -1.7164 -0.1634 17 6 10.7964 -0.7443 0.8210 18 6 10.5160 0.6714 0.3811 19 6 9.2303 1.1888 1.0515 20 7 8.1743 0.1586 1.0991 21 6 7.4347 0.0291 2.2443 22 1 7.0008 -0.9257 2.5018 23 6 7.2427 1.1252 3.0741 24 7 7.5143 2.3368 2.6374 25 14 6.5988 0.8808 4.8104 26 1 6.3737 -0.5664 5.0557 27 1 7.5928 1.3988 5.7845 28 1 5.3184 1.6156 4.9717 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2174 2.3527 0.0098 33 1 1.4195 4.5222 0.0001 34 1 3.8828 4.5447 -0.0096 35 1 6.0340 1.0047 -0.0102 36 1 6.1699 -1.6749 -0.8919 37 1 6.1776 -1.6691 0.8879 38 1 8.6418 -2.4085 1.1207 39 1 8.3782 -2.7488 -0.6033 40 1 10.2318 -1.2961 -1.1660 41 1 10.7091 -2.6535 -0.1376 42 1 11.8733 -0.9110 0.8456 43 1 10.3807 -0.9052 1.8157 44 1 10.3940 0.6960 -0.7018 45 1 11.3534 1.3088 0.6650 46 1 8.8611 2.0486 0.4925 47 1 9.4648 1.5025 2.0687 48 1 7.3798 3.1028 3.2171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969126396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:08 Heat of formation + Delta-G solvation = -29.979872 kcal Electronic energy + Delta-G solvation = -30320.893921 eV Core-core repulsion = 26376.284736 eV Total energy + Delta-G solvation = -3944.609186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.86087 -40.32321 -39.35394 -39.09603 -35.94130 -35.17993 -33.64663 -32.86420 -32.41926 -31.76775 -28.77052 -28.25029 -27.33708 -25.50552 -25.15497 -23.85940 -23.41481 -21.62890 -21.08239 -20.76162 -19.39395 -18.69697 -18.19514 -17.73903 -17.25146 -16.92836 -16.53400 -16.28357 -16.07410 -15.83004 -15.64550 -15.27431 -15.19583 -14.90559 -14.67271 -14.51705 -14.28527 -14.07322 -13.65340 -13.41996 -13.36023 -13.12672 -12.88033 -12.83098 -12.71030 -12.41784 -12.38329 -12.35248 -11.98888 -11.52583 -11.38446 -11.30937 -11.19355 -11.17333 -10.93310 -10.79976 -10.45730 -10.32320 -9.81665 -9.40710 -8.50036 -7.75151 -5.17278 -0.28533 0.27538 1.36707 1.42076 1.48126 1.88376 2.21231 2.41144 2.54332 2.92481 3.37211 3.39760 3.62567 3.65329 3.79941 4.02677 4.06725 4.11188 4.25941 4.29598 4.31000 4.35859 4.44357 4.50632 4.54922 4.63073 4.68179 4.69314 4.80974 4.93871 5.00285 5.03080 5.09063 5.15543 5.28343 5.29146 5.40417 5.44833 5.45562 5.58232 5.68566 5.72816 5.79382 5.83200 5.94554 6.26014 6.50975 6.69319 6.98738 7.30958 7.41530 8.04798 8.43071 9.28589 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.004308 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.376482 B = 6498.458198 C = 7216.918752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.120 3.880 4 C -0.171 4.171 5 C -0.089 4.089 6 C 0.045 3.955 7 N -0.439 5.439 8 C 0.006 3.994 9 C 0.555 3.445 10 O -0.573 6.573 11 N -0.675 5.675 12 C 0.131 3.869 13 C 0.173 3.827 14 H 0.053 0.947 15 C -0.126 4.126 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.132 4.132 19 C 0.192 3.808 20 N -0.587 5.587 21 C -0.232 4.232 22 H 0.045 0.955 23 C -0.025 4.025 24 N -0.910 5.910 25 Si 0.927 3.073 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.305 1.305 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.183 0.817 35 H 0.413 0.587 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.061 0.939 46 H -0.001 1.001 47 H 0.040 0.960 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 1.803 -8.976 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.219 6.219 3 C 0.069 3.931 4 C -0.197 4.197 5 C -0.109 4.109 6 C -0.117 4.117 7 N -0.150 5.150 8 C -0.131 4.131 9 C 0.341 3.659 10 O -0.454 6.454 11 N -0.323 5.323 12 C 0.007 3.993 13 C 0.066 3.934 14 H 0.071 0.929 15 C -0.167 4.167 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.171 4.171 19 C 0.067 3.933 20 N -0.309 5.309 21 C -0.363 4.363 22 H 0.063 0.937 23 C -0.222 4.222 24 N -0.556 5.556 25 Si 0.759 3.241 26 H -0.207 1.207 27 H -0.215 1.215 28 H -0.233 1.233 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.202 0.798 33 H 0.208 0.792 34 H 0.200 0.800 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.017 0.983 47 H 0.058 0.942 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.299 0.931 -8.916 12.216 hybrid contribution -1.213 0.516 1.553 2.037 sum -9.512 1.447 -7.363 12.115 Atomic orbital electron populations 1.23524 0.76245 1.05838 1.02928 1.86385 1.23541 1.25390 1.86633 1.20254 0.91876 0.87048 0.93917 1.22151 1.02538 0.90484 1.04518 1.22692 0.94718 0.99913 0.93557 1.23315 0.92985 0.96199 0.99158 1.67628 1.41229 0.98046 1.08129 1.20620 0.89673 0.92713 1.10100 1.18094 0.82879 0.87822 0.77144 1.90697 1.72607 1.28926 1.53201 1.45614 1.04863 1.11225 1.70623 1.21525 0.91648 0.86287 0.99879 1.20675 0.90452 0.91587 0.90736 0.92885 1.21261 0.96573 0.97818 1.01042 1.20258 0.95239 0.99218 0.99001 1.20908 0.99239 0.94658 0.99251 1.21943 0.97978 0.97157 1.00025 1.20755 0.85855 0.88480 0.98199 1.43745 1.36691 1.39176 1.11295 1.18932 1.25809 0.92683 0.98879 0.93717 1.25254 1.01019 0.95342 1.00577 1.70138 1.53809 0.96952 1.34718 0.85821 0.77144 0.76919 0.84230 1.20749 1.21514 1.23275 0.90979 0.90257 0.86929 0.79818 0.79180 0.79967 0.74965 0.91597 0.94019 0.93889 0.90874 0.92062 0.91776 0.91676 0.93916 0.92338 0.91994 0.98336 0.94186 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.83 113.37 1.11 1.28 16 2 O -0.31 -10.29 8.56 -68.67 -0.59 -10.88 16 3 C 0.12 3.99 6.71 22.94 0.15 4.14 16 4 C -0.17 -3.77 9.13 22.55 0.21 -3.57 16 5 C -0.09 -1.77 10.10 22.41 0.23 -1.54 16 6 C 0.05 1.27 11.17 84.89 0.95 2.22 16 7 N -0.44 -16.97 9.54 -184.63 -1.76 -18.73 16 8 C 0.01 0.24 6.76 41.93 0.28 0.53 16 9 C 0.55 25.94 7.80 86.78 0.68 26.61 16 10 O -0.57 -28.79 15.14 17.09 0.26 -28.53 16 11 N -0.68 -30.94 4.71 -465.99 -2.19 -33.13 16 12 C 0.13 5.57 4.52 86.38 0.39 5.96 16 13 C 0.17 6.88 2.19 45.99 0.10 6.98 16 14 H 0.05 2.03 8.07 -2.39 -0.02 2.02 16 15 C -0.13 -4.26 5.06 29.38 0.15 -4.11 16 16 C -0.10 -2.95 5.15 28.60 0.15 -2.80 16 17 C -0.10 -3.39 5.51 29.76 0.16 -3.23 16 18 C -0.13 -4.67 5.71 30.23 0.17 -4.50 16 19 C 0.19 8.78 4.66 86.49 0.40 9.18 16 20 N -0.59 -27.27 1.78 -674.25 -1.20 -28.47 16 21 C -0.23 -12.35 7.65 84.03 0.64 -11.70 16 22 H 0.05 2.53 6.71 -2.91 -0.02 2.51 16 23 C -0.03 -1.39 4.89 84.86 0.41 -0.98 16 24 N -0.91 -51.45 11.03 21.65 0.24 -51.21 16 25 Si 0.93 46.85 29.58 68.60 2.03 48.88 16 26 H -0.28 -14.22 7.11 99.48 0.71 -13.52 16 27 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 29 H 0.07 1.07 7.69 -2.39 -0.02 1.05 16 30 H 0.08 1.05 7.71 -2.39 -0.02 1.03 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.18 2.37 6.46 -2.91 -0.02 2.35 16 33 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.18 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.41 20.09 7.41 -92.71 -0.69 19.40 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.04 1.97 6.83 -2.39 -0.02 1.96 16 38 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.07 2.12 8.11 -2.39 -0.02 2.10 16 40 H 0.06 1.67 7.36 -2.39 -0.02 1.66 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.68 7.48 -2.39 -0.02 1.67 16 44 H 0.06 1.91 7.32 -2.39 -0.02 1.89 16 45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.00 -0.07 8.02 -2.39 -0.02 -0.09 16 47 H 0.04 2.09 6.40 -2.39 -0.02 2.07 16 48 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -73.41 377.32 3.26 -70.15 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.28 Total: 27.46 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 6.19 Total: 24.48 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -4.91 Total: -131.55 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.33 Total: -39.42 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -73.41 3.26 -70.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969126396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.171 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds