Wall clock time and date at job start Tue Mar 31 2020 17:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36944 * 119.99822 * 2 1 4 4 H 1.08004 * 119.99368 * 203.89024 * 3 2 1 5 5 C 1.38806 * 119.99936 * 23.88677 * 3 2 1 6 6 N 1.31617 * 120.00566 * 10.40150 * 5 3 2 7 7 Si 1.86809 * 119.99647 * 190.40070 * 5 3 2 8 8 H 1.48495 * 109.46957 * 60.00120 * 7 5 3 9 9 H 1.48501 * 109.47088 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46921 * 300.00052 * 7 5 3 11 11 C 1.46501 * 120.00180 * 179.97438 * 2 1 3 12 12 H 1.08993 * 110.64269 * 178.31047 * 11 2 1 13 13 C 1.55445 * 110.70545 * 54.99841 * 11 2 1 14 14 C 1.54903 * 101.45216 * 206.14589 * 13 11 2 15 15 N 1.47425 * 104.92784 * 37.00502 * 14 13 11 16 16 C 1.34782 * 125.65031 * 155.84045 * 15 14 13 17 17 O 1.21608 * 119.99406 * 355.11991 * 16 15 14 18 18 C 1.47391 * 120.00192 * 175.12019 * 16 15 14 19 19 C 1.37360 * 128.56541 * 5.91136 * 18 16 15 20 20 O 1.33494 * 106.34452 * 179.85034 * 19 18 16 21 21 N 1.20660 * 113.15326 * 0.45659 * 20 19 18 22 22 C 1.30014 * 112.30158 * 359.71024 * 21 20 19 23 23 C 1.50706 * 127.33588 * 179.97438 * 22 21 20 24 24 C 1.54263 * 110.02880 * 57.95146 * 23 22 21 25 25 C 1.54972 * 104.15732 * 217.13488 * 24 23 22 26 26 C 1.54893 * 102.77505 * 37.89199 * 25 24 23 27 27 C 1.53875 * 110.02884 * 300.73539 * 23 22 21 28 28 C 1.47019 * 108.70414 * 335.81548 * 15 14 13 29 29 H 1.09005 * 109.46597 * 274.58843 * 1 2 3 30 30 H 1.08995 * 109.47274 * 34.58298 * 1 2 3 31 31 H 1.08996 * 109.47225 * 154.59089 * 1 2 3 32 32 H 0.96996 * 120.00193 * 179.97438 * 6 5 3 33 33 H 1.09000 * 111.11601 * 88.09374 * 13 11 2 34 34 H 1.09000 * 111.01440 * 324.15210 * 13 11 2 35 35 H 1.09009 * 110.36517 * 278.11431 * 14 13 11 36 36 H 1.08998 * 110.37021 * 155.90133 * 14 13 11 37 37 H 1.08003 * 126.82798 * 359.97438 * 19 18 16 38 38 H 1.09001 * 110.01627 * 179.34451 * 23 22 21 39 39 H 1.08996 * 110.48964 * 335.78217 * 24 23 22 40 40 H 1.09001 * 110.48962 * 98.43180 * 24 23 22 41 41 H 1.08995 * 110.72009 * 279.57636 * 25 24 23 42 42 H 1.08996 * 110.92066 * 156.29952 * 25 24 23 43 43 H 1.08994 * 110.48259 * 203.40302 * 26 25 24 44 44 H 1.08998 * 110.59760 * 80.81658 * 26 25 24 45 45 H 1.09001 * 110.02817 * 238.56459 * 27 23 22 46 46 H 1.08990 * 110.03399 * 359.95011 * 27 23 22 47 47 H 1.08997 * 109.88097 * 120.47344 * 28 15 14 48 48 H 1.09001 * 109.88757 * 241.64522 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1603 1.2260 -0.3788 5 6 1.5448 2.3366 0.4868 6 7 0.4008 2.2559 1.1327 7 14 2.3544 3.9996 0.2251 8 1 2.4966 4.2573 -1.2304 9 1 1.5144 5.0608 0.8364 10 1 3.6959 4.0027 0.8617 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.7501 -2.1622 -1.1901 14 6 2.0638 -3.5785 -0.6467 15 7 1.7324 -3.5166 0.7885 16 6 1.4054 -4.5684 1.5653 17 8 1.2791 -5.6726 1.0718 18 6 1.2009 -4.3802 3.0128 19 6 1.1885 -3.2092 3.7307 20 8 0.9637 -3.5502 5.0017 21 7 0.8482 -4.7407 5.1602 22 6 0.9660 -5.4005 4.0461 23 6 0.8808 -6.8929 3.8543 24 6 -0.4811 -7.4134 4.3582 25 6 -0.1484 -8.7830 5.0027 26 6 1.2170 -8.5181 5.6844 27 6 1.9601 -7.5950 4.6968 28 6 1.8183 -2.1176 1.2323 29 1 -0.3633 0.0822 1.0245 30 1 -0.3633 0.8460 -0.5833 31 1 -0.3633 -0.9282 -0.4409 32 1 -0.0216 3.0600 1.4732 33 1 2.3362 -1.9480 -2.0838 34 1 0.6842 -2.0465 -1.3867 35 1 3.1199 -3.8116 -0.7825 36 1 1.4444 -4.3227 -1.1473 37 1 1.3302 -2.2109 3.3436 38 1 1.0090 -7.1415 2.8008 39 1 -0.8982 -6.7337 5.1011 40 1 -1.1727 -7.5409 3.5254 41 1 -0.0558 -9.5559 4.2398 42 1 -0.9015 -9.0590 5.7407 43 1 1.7635 -9.4514 5.8191 44 1 1.0766 -8.0175 6.6424 45 1 2.6116 -8.1851 4.0522 46 1 2.5460 -6.8564 5.2436 47 1 0.8542 -1.7930 1.6235 48 1 2.5849 -2.0188 2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971666735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:45 Heat of formation + Delta-G solvation = 49.208029 kcal Electronic energy + Delta-G solvation = -29430.811918 eV Core-core repulsion = 25489.636577 eV Total energy + Delta-G solvation = -3941.175341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.86848 -39.81949 -38.41306 -37.44561 -34.85839 -33.72647 -32.42010 -31.48917 -29.85542 -28.86293 -28.76939 -28.01821 -26.16902 -25.15546 -23.32340 -22.51905 -22.10727 -20.83093 -20.03593 -19.71516 -19.24663 -17.61479 -17.35507 -17.13195 -16.73309 -15.99628 -15.87773 -15.60755 -15.01369 -14.89208 -14.17052 -13.83514 -13.64341 -13.51336 -13.43908 -13.16232 -12.86123 -12.66070 -12.29489 -12.01486 -11.93731 -11.82823 -11.52962 -11.32631 -11.26183 -11.17731 -10.99518 -10.90961 -10.81910 -10.72536 -10.68162 -10.57286 -10.40877 -10.06978 -9.96547 -9.85357 -9.81326 -9.68077 -8.68865 -8.47723 -6.94594 -5.88056 -3.37942 1.12607 1.79468 2.81228 3.26758 3.30025 3.31918 3.36775 3.37279 3.94476 4.21113 4.35031 4.48403 4.52355 4.70498 4.79336 4.95908 5.03092 5.15900 5.24259 5.26983 5.30831 5.36097 5.39553 5.45430 5.49715 5.50073 5.60724 5.65035 5.68781 5.73079 5.78787 5.83679 5.90423 5.99411 6.03540 6.04304 6.15278 6.20538 6.28132 6.39101 6.43107 6.65397 6.74095 7.23116 7.57384 7.61243 7.67015 8.17764 8.23146 8.25851 9.06742 9.67870 10.16512 11.15943 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002821 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.435922 B = 9922.923632 C =10742.903001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.585 5.585 3 C -0.265 4.265 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.175 3.825 12 H 0.082 0.918 13 C -0.154 4.154 14 C 0.112 3.888 15 N -0.605 5.605 16 C 0.609 3.391 17 O -0.543 6.543 18 C -0.252 4.252 19 C -0.005 4.005 20 O 0.093 5.907 21 N -0.358 5.358 22 C 0.078 3.922 23 C -0.021 4.021 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.114 4.114 28 C 0.063 3.937 29 H 0.031 0.969 30 H 0.046 0.954 31 H 0.002 0.998 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -16.231 4.409 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.306 5.306 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.064 3.936 12 H 0.100 0.900 13 C -0.194 4.194 14 C -0.011 4.011 15 N -0.338 5.338 16 C 0.398 3.602 17 O -0.423 6.423 18 C -0.259 4.259 19 C -0.086 4.086 20 O 0.035 5.965 21 N -0.065 5.065 22 C -0.085 4.085 23 C -0.040 4.040 24 C -0.153 4.153 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.062 4.062 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.251 0.749 38 H 0.131 0.869 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.892 -16.972 5.544 17.876 hybrid contribution 0.490 1.340 -0.856 1.664 sum 1.382 -15.631 4.688 16.378 Atomic orbital electron populations 1.20846 0.82372 0.95928 0.99529 1.43912 1.01884 0.99838 1.84922 1.19169 0.99070 0.85425 1.35743 0.91222 1.25079 0.97567 0.98758 0.97699 1.70027 1.18127 1.27840 1.38857 0.86297 0.78613 0.83441 0.77927 1.20952 1.21564 1.20806 1.21398 0.96674 0.85778 0.89710 0.89969 1.23430 1.02936 0.93114 0.99920 1.22226 1.00186 0.98820 0.79838 1.48314 1.67125 1.07479 1.10909 1.16434 0.76843 0.83474 0.83482 1.90728 1.52954 1.24149 1.74423 1.22265 1.14875 0.92842 0.95954 1.27312 0.96275 1.01651 0.83411 1.84598 1.65552 1.18807 1.27549 1.73593 1.19980 0.89646 1.23301 1.24701 0.99160 0.97975 0.86677 1.20453 0.96207 0.84439 1.02898 1.22448 0.95660 0.96767 1.00406 1.22495 0.97020 0.96935 0.99571 1.22350 0.95980 0.99075 0.98602 1.22188 0.97187 0.98418 0.97433 1.23353 1.01696 0.79844 1.01283 0.95031 0.93524 0.97942 0.93435 0.90139 0.90354 0.91530 0.90755 0.74904 0.86880 0.91195 0.91085 0.91252 0.91417 0.91601 0.91495 0.91125 0.91693 0.90450 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.48 7.74 59.85 0.46 3.95 16 2 N -0.59 -12.86 2.93 -171.21 -0.50 -13.37 16 3 C -0.26 -6.55 9.61 -15.06 -0.14 -6.69 16 4 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 5 C 0.01 0.21 5.15 -17.43 -0.09 0.12 16 6 N -0.90 -24.28 10.63 55.49 0.59 -23.69 16 7 Si 0.91 20.41 29.57 -169.99 -5.03 15.38 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 C 0.18 3.05 3.45 -65.94 -0.23 2.82 16 12 H 0.08 1.41 7.93 -51.93 -0.41 1.00 16 13 C -0.15 -2.30 6.61 -24.43 -0.16 -2.46 16 14 C 0.11 1.56 6.92 -2.53 -0.02 1.55 16 15 N -0.61 -9.29 3.33 -171.80 -0.57 -9.86 16 16 C 0.61 9.98 7.84 -12.53 -0.10 9.88 16 17 O -0.54 -9.93 15.53 5.27 0.08 -9.85 16 18 C -0.25 -3.80 6.40 -102.90 -0.66 -4.46 16 19 C 0.00 -0.06 10.84 30.41 0.33 0.27 16 20 O 0.09 1.32 11.06 18.65 0.21 1.53 16 21 N -0.36 -5.28 11.85 34.78 0.41 -4.86 16 22 C 0.08 1.13 5.78 -79.76 -0.46 0.67 16 23 C -0.02 -0.26 3.37 -90.65 -0.31 -0.57 16 24 C -0.11 -1.28 6.36 -25.03 -0.16 -1.44 16 25 C -0.12 -1.10 6.91 -24.69 -0.17 -1.27 16 26 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 27 C -0.11 -1.25 6.45 -25.61 -0.17 -1.41 16 28 C 0.06 0.99 4.68 -3.07 -0.01 0.98 16 29 H 0.03 0.75 7.27 -51.93 -0.38 0.37 16 30 H 0.05 1.14 7.29 -51.93 -0.38 0.76 16 31 H 0.00 0.04 6.12 -51.93 -0.32 -0.28 16 32 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.26 6.14 -51.93 -0.32 0.94 16 35 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 36 H 0.07 1.04 7.99 -51.93 -0.41 0.63 16 37 H 0.24 2.87 4.87 -52.48 -0.26 2.62 16 38 H 0.11 1.59 6.36 -51.93 -0.33 1.26 16 39 H 0.07 0.84 7.72 -51.93 -0.40 0.44 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 47 H 0.08 1.30 5.97 -51.93 -0.31 0.99 16 48 H 0.07 0.95 7.01 -51.93 -0.36 0.58 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -28.41 374.77 -8.42 -36.84 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.21 Total: 1.62 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.05 Total: 0.62 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.07 Total: -51.78 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.29 Total: -8.32 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.41 -8.42 -36.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971666735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.044 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds