Wall clock time and date at job start Tue Mar 31 2020 17:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36944 * 119.99822 * 2 1 4 4 H 1.08004 * 119.99368 * 203.89024 * 3 2 1 5 5 C 1.38806 * 119.99936 * 23.88677 * 3 2 1 6 6 N 1.31617 * 120.00566 * 10.40150 * 5 3 2 7 7 Si 1.86809 * 119.99647 * 190.40070 * 5 3 2 8 8 H 1.48495 * 109.46957 * 60.00120 * 7 5 3 9 9 H 1.48501 * 109.47088 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46921 * 300.00052 * 7 5 3 11 11 C 1.46501 * 120.00180 * 179.97438 * 2 1 3 12 12 H 1.08993 * 110.64269 * 178.31047 * 11 2 1 13 13 C 1.55445 * 110.70545 * 54.99841 * 11 2 1 14 14 C 1.54903 * 101.45216 * 206.14589 * 13 11 2 15 15 N 1.47425 * 104.92784 * 37.00502 * 14 13 11 16 16 C 1.34782 * 125.65031 * 155.84045 * 15 14 13 17 17 O 1.21608 * 119.99406 * 355.11991 * 16 15 14 18 18 C 1.47391 * 120.00192 * 175.12019 * 16 15 14 19 19 C 1.37360 * 128.56541 * 5.91136 * 18 16 15 20 20 O 1.33494 * 106.34452 * 179.85034 * 19 18 16 21 21 N 1.20660 * 113.15326 * 0.45659 * 20 19 18 22 22 C 1.30014 * 112.30158 * 359.71024 * 21 20 19 23 23 C 1.50706 * 127.33588 * 179.97438 * 22 21 20 24 24 C 1.54263 * 110.02880 * 57.95146 * 23 22 21 25 25 C 1.54972 * 104.15732 * 217.13488 * 24 23 22 26 26 C 1.54893 * 102.77505 * 37.89199 * 25 24 23 27 27 C 1.53875 * 110.02884 * 300.73539 * 23 22 21 28 28 C 1.47019 * 108.70414 * 335.81548 * 15 14 13 29 29 H 1.09005 * 109.46597 * 274.58843 * 1 2 3 30 30 H 1.08995 * 109.47274 * 34.58298 * 1 2 3 31 31 H 1.08996 * 109.47225 * 154.59089 * 1 2 3 32 32 H 0.96996 * 120.00193 * 179.97438 * 6 5 3 33 33 H 1.09000 * 111.11601 * 88.09374 * 13 11 2 34 34 H 1.09000 * 111.01440 * 324.15210 * 13 11 2 35 35 H 1.09009 * 110.36517 * 278.11431 * 14 13 11 36 36 H 1.08998 * 110.37021 * 155.90133 * 14 13 11 37 37 H 1.08003 * 126.82798 * 359.97438 * 19 18 16 38 38 H 1.09001 * 110.01627 * 179.34451 * 23 22 21 39 39 H 1.08996 * 110.48964 * 335.78217 * 24 23 22 40 40 H 1.09001 * 110.48962 * 98.43180 * 24 23 22 41 41 H 1.08995 * 110.72009 * 279.57636 * 25 24 23 42 42 H 1.08996 * 110.92066 * 156.29952 * 25 24 23 43 43 H 1.08994 * 110.48259 * 203.40302 * 26 25 24 44 44 H 1.08998 * 110.59760 * 80.81658 * 26 25 24 45 45 H 1.09001 * 110.02817 * 238.56459 * 27 23 22 46 46 H 1.08990 * 110.03399 * 359.95011 * 27 23 22 47 47 H 1.08997 * 109.88097 * 120.47344 * 28 15 14 48 48 H 1.09001 * 109.88757 * 241.64522 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1603 1.2260 -0.3788 5 6 1.5448 2.3366 0.4868 6 7 0.4008 2.2559 1.1327 7 14 2.3544 3.9996 0.2251 8 1 2.4966 4.2573 -1.2304 9 1 1.5144 5.0608 0.8364 10 1 3.6959 4.0027 0.8617 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.7501 -2.1622 -1.1901 14 6 2.0638 -3.5785 -0.6467 15 7 1.7324 -3.5166 0.7885 16 6 1.4054 -4.5684 1.5653 17 8 1.2791 -5.6726 1.0718 18 6 1.2009 -4.3802 3.0128 19 6 1.1885 -3.2092 3.7307 20 8 0.9637 -3.5502 5.0017 21 7 0.8482 -4.7407 5.1602 22 6 0.9660 -5.4005 4.0461 23 6 0.8808 -6.8929 3.8543 24 6 -0.4811 -7.4134 4.3582 25 6 -0.1484 -8.7830 5.0027 26 6 1.2170 -8.5181 5.6844 27 6 1.9601 -7.5950 4.6968 28 6 1.8183 -2.1176 1.2323 29 1 -0.3633 0.0822 1.0245 30 1 -0.3633 0.8460 -0.5833 31 1 -0.3633 -0.9282 -0.4409 32 1 -0.0216 3.0600 1.4732 33 1 2.3362 -1.9480 -2.0838 34 1 0.6842 -2.0465 -1.3867 35 1 3.1199 -3.8116 -0.7825 36 1 1.4444 -4.3227 -1.1473 37 1 1.3302 -2.2109 3.3436 38 1 1.0090 -7.1415 2.8008 39 1 -0.8982 -6.7337 5.1011 40 1 -1.1727 -7.5409 3.5254 41 1 -0.0558 -9.5559 4.2398 42 1 -0.9015 -9.0590 5.7407 43 1 1.7635 -9.4514 5.8191 44 1 1.0766 -8.0175 6.6424 45 1 2.6116 -8.1851 4.0522 46 1 2.5460 -6.8564 5.2436 47 1 0.8542 -1.7930 1.6235 48 1 2.5849 -2.0188 2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971666735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:44 Heat of formation + Delta-G solvation = 34.941879 kcal Electronic energy + Delta-G solvation = -29431.430545 eV Core-core repulsion = 25489.636577 eV Total energy + Delta-G solvation = -3941.793967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.01424 -41.11396 -39.34912 -38.79585 -36.49492 -34.83398 -33.70853 -33.06678 -31.22559 -29.70505 -29.69160 -29.41031 -28.01444 -26.42081 -24.89137 -23.58441 -23.39385 -21.59935 -21.27589 -20.96631 -20.45886 -18.93833 -18.73738 -18.49498 -17.92313 -17.39564 -17.00091 -16.73873 -16.47282 -15.98207 -15.67511 -15.18680 -14.98558 -14.57251 -14.47456 -14.38110 -14.33760 -14.12321 -13.70775 -13.32200 -13.08250 -12.95076 -12.88690 -12.68747 -12.48356 -12.36915 -12.22192 -12.20054 -12.07433 -12.06365 -11.99061 -11.81565 -11.72369 -11.54321 -11.44576 -11.13474 -10.95292 -10.82767 -10.58841 -9.73782 -8.76929 -7.79949 -5.30435 -0.03755 0.65699 1.52278 1.53564 1.59137 1.62581 2.01679 2.15601 2.53661 2.85664 3.13528 3.31411 3.39470 3.64988 3.65488 3.76697 3.82515 3.84557 3.92273 3.97206 4.29653 4.30729 4.35035 4.43672 4.44591 4.50326 4.52513 4.61153 4.64958 4.75698 4.81404 4.82724 4.84263 4.92109 5.00720 5.01280 5.13031 5.18832 5.20555 5.22822 5.32515 5.34157 5.42776 5.44767 5.69896 5.76114 6.31852 6.36577 6.93159 7.10035 7.17577 7.87026 8.31296 9.22025 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002821 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.435922 B = 9922.923632 C =10742.903001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.598 5.598 3 C -0.263 4.263 4 H 0.077 0.923 5 C -0.045 4.045 6 N -0.934 5.934 7 Si 0.964 3.036 8 H -0.281 1.281 9 H -0.300 1.300 10 H -0.275 1.275 11 C 0.168 3.832 12 H 0.089 0.911 13 C -0.141 4.141 14 C 0.114 3.886 15 N -0.604 5.604 16 C 0.609 3.391 17 O -0.565 6.565 18 C -0.273 4.273 19 C 0.013 3.987 20 O 0.091 5.909 21 N -0.368 5.368 22 C 0.076 3.924 23 C -0.024 4.024 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.112 4.112 28 C 0.074 3.926 29 H 0.009 0.991 30 H 0.016 0.984 31 H 0.027 0.973 32 H 0.248 0.752 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.247 0.753 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 -17.571 4.256 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.393 4.393 4 H 0.094 0.906 5 C -0.241 4.241 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.207 1.207 9 H -0.227 1.227 10 H -0.200 1.200 11 C 0.059 3.941 12 H 0.107 0.893 13 C -0.181 4.181 14 C -0.008 4.008 15 N -0.336 5.336 16 C 0.398 3.602 17 O -0.446 6.446 18 C -0.280 4.280 19 C -0.069 4.069 20 O 0.034 5.966 21 N -0.076 5.076 22 C -0.087 4.087 23 C -0.044 4.044 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.150 4.150 28 C -0.051 4.051 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.262 0.738 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.048 -18.330 5.377 19.212 hybrid contribution 0.164 1.709 -0.858 1.920 sum 2.212 -16.621 4.519 17.366 Atomic orbital electron populations 1.20530 0.82890 0.95760 0.97779 1.44020 1.01813 1.00836 1.85250 1.19506 0.99182 0.86483 1.34158 0.90570 1.25730 0.98316 1.01611 0.98401 1.70180 1.19482 1.27811 1.40514 0.85402 0.77785 0.79944 0.77612 1.20747 1.22660 1.20049 1.21573 0.96625 0.84498 0.91399 0.89281 1.23298 1.02384 0.92880 0.99500 1.22314 1.01451 0.98111 0.78880 1.48311 1.66791 1.07024 1.11467 1.16533 0.76480 0.83256 0.83887 1.90715 1.54080 1.24903 1.74918 1.22286 1.16393 0.93646 0.95709 1.27449 0.94769 1.01657 0.83022 1.84590 1.65535 1.18754 1.27720 1.73592 1.20703 0.89789 1.23487 1.25043 0.98391 0.98865 0.86410 1.20545 0.97769 0.83624 1.02441 1.22447 0.94741 0.97893 1.00198 1.22497 0.97180 0.95713 0.99986 1.22347 0.96052 0.99427 0.97781 1.22191 0.96822 0.98404 0.97628 1.23100 1.01562 0.79738 1.00671 0.97258 0.96552 0.95478 0.94310 0.88441 0.91513 0.89532 0.90521 0.73782 0.88322 0.92335 0.91135 0.90157 0.90076 0.89641 0.91925 0.90239 0.92922 0.91575 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 7.78 7.74 127.77 0.99 8.77 16 2 N -0.60 -25.81 2.93 -695.59 -2.04 -27.85 16 3 C -0.26 -12.82 9.61 84.03 0.81 -12.01 16 4 H 0.08 3.55 7.83 -2.91 -0.02 3.53 16 5 C -0.04 -2.30 5.15 84.86 0.44 -1.86 16 6 N -0.93 -50.97 10.63 21.65 0.23 -50.74 16 7 Si 0.96 41.93 29.57 68.60 2.03 43.96 16 8 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 9 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 C 0.17 5.53 3.45 46.28 0.16 5.69 16 12 H 0.09 2.84 7.93 -2.39 -0.02 2.82 16 13 C -0.14 -3.89 6.61 32.09 0.21 -3.67 16 14 C 0.11 2.92 6.92 86.85 0.60 3.52 16 15 N -0.60 -17.51 3.33 -815.71 -2.71 -20.23 16 16 C 0.61 19.37 7.84 86.65 0.68 20.04 16 17 O -0.56 -20.25 15.53 -4.05 -0.06 -20.31 16 18 C -0.27 -8.08 6.40 -18.75 -0.12 -8.20 16 19 C 0.01 0.34 10.84 67.61 0.73 1.07 16 20 O 0.09 2.53 11.06 76.97 0.85 3.38 16 21 N -0.37 -10.70 11.85 -44.77 -0.53 -11.23 16 22 C 0.08 2.19 5.78 45.16 0.26 2.45 16 23 C -0.02 -0.61 3.37 -10.81 -0.04 -0.64 16 24 C -0.11 -2.47 6.36 31.70 0.20 -2.27 16 25 C -0.12 -1.86 6.91 31.92 0.22 -1.64 16 26 C -0.12 -1.96 6.83 31.67 0.22 -1.74 16 27 C -0.11 -2.34 6.45 31.32 0.20 -2.13 16 28 C 0.07 2.20 4.68 86.73 0.41 2.61 16 29 H 0.01 0.45 7.27 -2.38 -0.02 0.43 16 30 H 0.02 0.79 7.29 -2.39 -0.02 0.77 16 31 H 0.03 1.04 6.12 -2.39 -0.01 1.03 16 32 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.02 6.14 -2.39 -0.01 2.01 16 35 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.08 1.98 7.99 -2.39 -0.02 1.96 16 37 H 0.25 5.77 4.87 -2.91 -0.01 5.76 16 38 H 0.10 2.76 6.36 -2.39 -0.02 2.74 16 39 H 0.06 1.39 7.72 -2.39 -0.02 1.37 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 1.22 7.66 -2.39 -0.02 1.20 16 47 H 0.07 2.16 5.97 -2.39 -0.01 2.14 16 48 H 0.08 2.17 7.01 -2.39 -0.02 2.15 16 Total: -1.00 -60.50 374.77 4.71 -55.80 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.97 Total: 17.24 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.97 Total: 9.99 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -5.05 Total: -110.05 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.79 Total: -16.93 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -60.50 4.71 -55.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971666735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.737 kcal (2) G-P(sol) polarization free energy of solvation -60.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds