Wall clock time and date at job start Tue Mar 31 2020 17:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35674 * 116.99919 * 2 1 4 4 C 1.38915 * 119.68626 * 179.97438 * 3 2 1 5 5 C 1.38379 * 119.11748 * 180.02562 * 4 3 2 6 6 C 1.38827 * 118.48422 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.35517 * 180.27136 * 6 5 4 8 8 C 1.52998 * 109.47182 * 269.71743 * 7 6 5 9 9 C 1.50704 * 109.47058 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00001 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99599 * 180.02562 * 9 8 7 12 12 C 1.47416 * 125.65135 * 0.02562 * 11 9 8 13 13 C 1.54906 * 104.83188 * 204.09119 * 12 11 9 14 14 C 1.55150 * 101.58487 * 322.99045 * 13 12 11 15 15 H 1.08996 * 110.72370 * 277.13908 * 14 13 12 16 16 N 1.46500 * 110.72031 * 154.03983 * 14 13 12 17 17 C 1.46501 * 120.00035 * 301.45522 * 16 14 13 18 18 C 1.36938 * 119.99907 * 121.45731 * 16 14 13 19 19 H 1.08004 * 119.99844 * 23.49052 * 18 16 14 20 20 C 1.38811 * 119.99950 * 203.48269 * 18 16 14 21 21 N 1.31620 * 119.99817 * 15.10769 * 20 18 16 22 22 Si 1.86801 * 120.00027 * 195.09860 * 20 18 16 23 23 H 1.48504 * 109.46724 * 90.00729 * 22 20 18 24 24 H 1.48505 * 109.47045 * 210.00325 * 22 20 18 25 25 H 1.48494 * 109.47151 * 330.00585 * 22 20 18 26 26 C 1.47024 * 125.64148 * 179.71430 * 11 9 8 27 27 C 1.38052 * 119.28800 * 359.97438 * 6 5 4 28 28 N 1.31969 * 120.83223 * 359.97438 * 27 6 5 29 29 H 1.08999 * 109.47328 * 59.99376 * 1 2 3 30 30 H 1.08991 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46518 * 299.99793 * 1 2 3 32 32 H 1.08009 * 120.44027 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.75590 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46980 * 29.72177 * 7 6 5 35 35 H 1.09007 * 109.46634 * 149.71854 * 7 6 5 36 36 H 1.08999 * 109.47517 * 300.00105 * 8 7 6 37 37 H 1.08999 * 109.46819 * 60.00035 * 8 7 6 38 38 H 1.08999 * 110.36754 * 322.93225 * 12 11 9 39 39 H 1.09005 * 110.36982 * 85.25603 * 12 11 9 40 40 H 1.09005 * 111.00447 * 81.06980 * 13 12 11 41 41 H 1.09001 * 111.00591 * 204.91285 * 13 12 11 42 42 H 1.08996 * 109.47273 * 95.21558 * 17 16 14 43 43 H 1.09000 * 109.47249 * 215.21042 * 17 16 14 44 44 H 1.08998 * 109.47513 * 335.21061 * 17 16 14 45 45 H 0.97000 * 119.99745 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.88429 * 298.39558 * 26 11 9 47 47 H 1.09003 * 109.88189 * 59.56217 * 26 11 9 48 48 H 1.08000 * 119.58301 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6492 0.0016 7 6 3.8769 5.0198 -0.0040 8 6 4.0880 5.4899 1.4366 9 6 4.7138 6.8608 1.4310 10 8 4.9665 7.4078 0.3785 11 7 4.9936 7.4786 2.5958 12 6 4.7416 6.9309 3.9410 13 6 4.6345 8.1726 4.8610 14 6 5.7064 9.1100 4.2452 15 1 6.6989 8.8598 4.6200 16 7 5.3885 10.5131 4.5219 17 6 4.1143 11.0782 4.0711 18 6 6.2825 11.2964 5.2019 19 1 7.3316 11.0394 5.2062 20 6 5.8406 12.4208 5.8854 21 7 4.5578 12.5771 6.1352 22 14 7.0664 13.7120 6.4509 23 1 7.2372 14.7324 5.3856 24 1 6.5629 14.3652 7.6859 25 1 8.3733 13.0649 6.7306 26 6 5.6066 8.8077 2.7350 27 6 1.8771 3.5097 0.0010 28 7 1.3187 2.3140 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 4.0229 0.3695 0.0005 33 1 5.1254 2.5946 0.0011 34 1 4.8377 4.9781 -0.5171 35 1 3.2187 5.7179 -0.5212 36 1 3.1273 5.5316 1.9498 37 1 4.7462 4.7917 1.9538 38 1 3.8081 6.3683 3.9528 39 1 5.5714 6.2972 4.2542 40 1 3.6424 8.6199 4.7996 41 1 4.8834 7.9181 5.8913 42 1 3.3874 11.0278 4.8818 43 1 4.2610 12.1180 3.7789 44 1 3.7463 10.5093 3.2173 45 1 4.2490 13.3627 6.6132 46 1 6.6009 8.8059 2.2887 47 1 4.9813 9.5570 2.2494 48 1 1.2518 4.3903 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971923140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:57 Heat of formation + Delta-G solvation = -32.908118 kcal Electronic energy + Delta-G solvation = -27813.752829 eV Core-core repulsion = 23869.016665 eV Total energy + Delta-G solvation = -3944.736164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.65029 -41.03340 -39.18174 -38.77932 -36.51941 -35.15204 -33.48270 -33.13070 -31.45090 -30.71883 -29.30961 -28.17262 -28.05385 -26.09927 -24.74507 -24.31646 -23.69816 -22.41593 -20.86841 -20.06480 -19.35384 -18.93836 -18.18522 -18.11116 -17.50912 -16.96910 -16.61567 -16.46466 -16.05115 -15.70851 -15.43428 -15.28326 -15.03881 -14.86081 -14.56348 -14.48645 -14.30119 -14.02744 -13.86902 -13.61371 -13.16896 -13.12785 -12.97023 -12.86744 -12.84776 -12.56775 -12.50865 -12.36407 -12.23493 -12.06977 -12.03135 -11.98479 -11.81738 -11.45204 -10.94095 -10.77866 -10.64412 -10.57770 -9.60200 -9.34913 -8.80730 -7.84513 -5.33463 0.16494 0.30463 1.47273 1.49662 1.57409 1.67753 2.02638 2.18412 2.51470 2.77659 3.27893 3.36713 3.50223 3.59373 3.85809 3.94241 3.96130 4.02044 4.10224 4.22784 4.29388 4.35064 4.35628 4.40232 4.43628 4.47799 4.49663 4.62918 4.71797 4.74366 4.77178 4.81308 4.94315 4.95548 5.01518 5.05033 5.16005 5.21094 5.29094 5.35278 5.40929 5.41876 5.52681 5.64472 5.67009 6.25295 6.31200 6.62769 6.86218 7.12045 7.19815 7.83318 8.28480 9.18819 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.001837 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.493407 B =15239.621152 C =15505.121085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.292 3.708 4 C -0.190 4.190 5 C -0.033 4.033 6 C -0.164 4.164 7 C -0.048 4.048 8 C -0.118 4.118 9 C 0.519 3.481 10 O -0.592 6.592 11 N -0.615 5.615 12 C 0.109 3.891 13 C -0.144 4.144 14 C 0.164 3.836 15 H 0.081 0.919 16 N -0.602 5.602 17 C 0.179 3.821 18 C -0.267 4.267 19 H 0.074 0.926 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.290 1.290 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.098 3.902 27 C 0.133 3.867 28 N -0.558 5.558 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.054 0.946 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.012 0.988 43 H 0.009 0.991 44 H 0.024 0.976 45 H 0.248 0.752 46 H 0.054 0.946 47 H 0.044 0.956 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 -26.212 -9.791 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.058 4.058 6 C -0.167 4.167 7 C -0.086 4.086 8 C -0.158 4.158 9 C 0.310 3.690 10 O -0.473 6.473 11 N -0.349 5.349 12 C -0.013 4.013 13 C -0.184 4.184 14 C 0.056 3.944 15 H 0.100 0.900 16 N -0.323 5.323 17 C 0.034 3.966 18 C -0.397 4.397 19 H 0.092 0.908 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.218 1.218 24 H -0.222 1.222 25 H -0.190 1.190 26 C -0.027 4.027 27 C -0.022 4.022 28 N -0.281 5.281 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.073 0.927 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.030 0.970 43 H 0.028 0.972 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.266 -26.187 -10.314 28.634 hybrid contribution 0.862 1.620 0.383 1.875 sum -4.405 -24.567 -9.932 26.862 Atomic orbital electron populations 1.23003 0.76133 1.04466 1.02053 1.86212 1.24128 1.24724 1.87994 1.20214 0.90342 0.84807 0.93305 1.21333 0.91514 1.00623 1.07587 1.21666 1.01848 0.90015 0.92248 1.20694 0.94508 0.96324 1.05163 1.20074 1.01693 0.91451 0.95385 1.21662 1.03300 0.91285 0.99510 1.21144 0.77830 0.88602 0.81425 1.90680 1.55906 1.68744 1.31951 1.48649 1.60860 1.18233 1.07126 1.22498 1.03274 0.95862 0.79697 1.23220 0.99844 0.95590 0.99758 1.21487 0.98099 0.83875 0.90954 0.90050 1.44015 1.18222 1.06354 1.63754 1.20445 0.87236 0.94600 0.94342 1.19555 0.89687 1.05996 1.24448 0.90806 1.25760 0.97565 1.02212 0.98967 1.70222 1.14576 1.28881 1.44375 0.85263 0.79008 0.79327 0.76814 1.21760 1.22169 1.19006 1.22329 0.96926 0.84359 0.99116 1.22620 0.92993 0.93626 0.92960 1.67320 1.41629 0.99314 1.19857 0.92782 0.86134 0.92695 0.82450 0.81542 0.90262 0.90849 0.87114 0.86313 0.88006 0.88709 0.92552 0.89607 0.96996 0.97213 0.95791 0.94241 0.92745 0.93762 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 113.37 1.18 1.67 16 2 O -0.32 -5.86 10.48 -89.91 -0.94 -6.81 16 3 C 0.29 5.52 7.49 84.79 0.63 6.16 16 4 C -0.19 -2.77 10.04 22.47 0.23 -2.54 16 5 C -0.03 -0.41 9.85 22.44 0.22 -0.19 16 6 C -0.16 -2.40 5.15 -19.77 -0.10 -2.50 16 7 C -0.05 -0.76 4.66 29.85 0.14 -0.62 16 8 C -0.12 -1.88 4.69 29.85 0.14 -1.74 16 9 C 0.52 13.95 7.85 87.66 0.69 14.64 16 10 O -0.59 -21.11 16.31 -3.01 -0.05 -21.16 16 11 N -0.62 -17.15 3.33 -811.78 -2.70 -19.85 16 12 C 0.11 2.31 6.69 86.86 0.58 2.89 16 13 C -0.14 -4.37 6.65 31.98 0.21 -4.16 16 14 C 0.16 6.18 3.42 46.18 0.16 6.34 16 15 H 0.08 2.99 7.93 -2.39 -0.02 2.97 16 16 N -0.60 -29.21 2.93 -696.13 -2.04 -31.26 16 17 C 0.18 8.83 7.70 127.77 0.98 9.81 16 18 C -0.27 -14.25 9.59 84.03 0.81 -13.45 16 19 H 0.07 3.80 7.85 -2.91 -0.02 3.77 16 20 C -0.05 -2.72 5.06 84.86 0.43 -2.29 16 21 N -0.93 -54.49 10.86 21.65 0.24 -54.25 16 22 Si 0.97 44.42 29.58 68.60 2.03 46.45 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 C 0.10 3.48 6.41 86.73 0.56 4.04 16 27 C 0.13 2.21 10.85 84.63 0.92 3.13 16 28 N -0.56 -11.04 9.22 -308.95 -2.85 -13.89 16 29 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.08 1.34 8.05 -2.39 -0.02 1.33 16 35 H 0.07 1.34 8.05 -2.38 -0.02 1.32 16 36 H 0.11 1.44 7.85 -2.39 -0.02 1.42 16 37 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.58 7.48 -2.39 -0.02 1.56 16 39 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.06 1.94 7.28 -2.38 -0.02 1.93 16 41 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.01 0.63 7.32 -2.39 -0.02 0.61 16 43 H 0.01 0.50 7.43 -2.39 -0.02 0.48 16 44 H 0.02 1.05 6.30 -2.39 -0.02 1.04 16 45 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 1.82 6.15 -2.39 -0.01 1.80 16 48 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -72.18 391.60 2.40 -69.78 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.94 Total: 9.80 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 7.77 Total: 21.18 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -7.35 Total: -119.24 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.99 Total: -27.97 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.18 2.40 -69.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971923140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.873 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds