Wall clock time and date at job start Tue Mar 31 2020 17:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36941 * 120.00082 * 2 1 4 4 H 1.07999 * 120.00185 * 203.24511 * 3 2 1 5 5 C 1.38814 * 119.99808 * 23.25214 * 3 2 1 6 6 N 1.31627 * 119.99946 * 13.75671 * 5 3 2 7 7 Si 1.86793 * 120.00246 * 193.75794 * 5 3 2 8 8 H 1.48499 * 109.47290 * 59.99706 * 7 5 3 9 9 H 1.48501 * 109.47204 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47124 * 299.99866 * 7 5 3 11 11 C 1.46502 * 120.00109 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.88480 * 183.87748 * 11 2 1 13 13 C 1.55153 * 111.00562 * 59.99788 * 11 2 1 14 14 C 1.54321 * 102.94305 * 206.42441 * 13 11 2 15 15 N 1.47022 * 107.26921 * 22.19208 * 14 13 11 16 16 C 1.34783 * 125.64531 * 181.02148 * 15 14 13 17 17 O 1.21501 * 119.99719 * 180.02562 * 16 15 14 18 18 C 1.48330 * 120.00410 * 0.02766 * 16 15 14 19 19 N 1.31344 * 127.12674 * 0.02562 * 18 16 15 20 20 O 1.21245 * 111.48313 * 179.97438 * 19 18 16 21 21 C 1.33635 * 111.64215 * 359.63563 * 20 19 18 22 22 C 1.34990 * 106.59821 * 0.64215 * 21 20 19 23 23 C 1.50077 * 126.59986 * 178.48418 * 22 21 20 24 24 C 1.53331 * 108.96949 * 27.97754 * 23 22 21 25 25 C 1.52461 * 109.50058 * 271.48904 * 24 23 22 26 26 C 1.52624 * 111.02279 * 61.39714 * 25 24 23 27 27 C 1.50607 * 128.02718 * 180.75741 * 21 20 19 28 28 C 1.47415 * 108.70471 * 1.28819 * 15 14 13 29 29 H 1.09006 * 109.47361 * 275.15182 * 1 2 3 30 30 H 1.08997 * 109.47467 * 35.15270 * 1 2 3 31 31 H 1.09008 * 109.47380 * 155.15488 * 1 2 3 32 32 H 0.96995 * 120.00274 * 180.02562 * 6 5 3 33 33 H 1.08997 * 110.72063 * 88.05962 * 13 11 2 34 34 H 1.08998 * 110.87101 * 324.85780 * 13 11 2 35 35 H 1.09000 * 109.88507 * 262.77344 * 14 13 11 36 36 H 1.08997 * 110.01421 * 141.68361 * 14 13 11 37 37 H 1.09002 * 109.55736 * 147.82429 * 23 22 21 38 38 H 1.09002 * 109.55366 * 268.13118 * 23 22 21 39 39 H 1.08995 * 109.46472 * 31.46548 * 24 23 22 40 40 H 1.08995 * 109.46895 * 151.45426 * 24 23 22 41 41 H 1.08993 * 109.10508 * 301.01284 * 25 24 23 42 42 H 1.09002 * 109.15809 * 181.81385 * 25 24 23 43 43 H 1.08996 * 109.39920 * 273.56162 * 26 25 24 44 44 H 1.09004 * 109.39851 * 153.73545 * 26 25 24 45 45 H 1.09009 * 109.53294 * 106.96612 * 27 21 20 46 46 H 1.09000 * 109.60775 * 346.77151 * 27 21 20 47 47 H 1.09001 * 110.37341 * 94.48378 * 28 15 14 48 48 H 1.09000 * 110.36958 * 216.80692 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1639 1.2239 -0.3691 5 6 1.5401 2.3393 0.4746 6 7 0.4239 2.2564 1.1672 7 14 2.3039 4.0088 0.1304 8 1 2.3844 4.2233 -1.3369 9 1 1.4655 5.0720 0.7403 10 1 3.6688 4.0584 0.7135 11 6 2.1974 -1.2687 -0.0006 12 1 3.2717 -1.0972 0.0684 13 6 1.8483 -2.1120 -1.2553 14 6 2.1063 -3.5582 -0.7826 15 7 2.0265 -3.5583 0.6854 16 6 2.2132 -4.6293 1.4821 17 8 2.1220 -4.5126 2.6881 18 6 2.5300 -5.9504 0.8867 19 7 2.6614 -6.2341 -0.3890 20 8 2.9231 -7.4057 -0.5587 21 6 3.0092 -8.0645 0.6009 22 6 2.7525 -7.1658 1.5749 23 6 2.7005 -7.4356 3.0503 24 6 3.6181 -8.6210 3.3728 25 6 2.8346 -9.9221 3.2396 26 6 2.3239 -10.1101 1.8136 27 6 3.3294 -9.5197 0.8196 28 6 1.7020 -2.1945 1.1414 29 1 -0.3634 0.0923 1.0236 30 1 -0.3634 0.8402 -0.5917 31 1 -0.3634 -0.9326 -0.4318 32 1 -0.0023 3.0623 1.4985 33 1 2.5042 -1.8553 -2.0871 34 1 0.8032 -1.9782 -1.5346 35 1 3.0980 -3.8806 -1.0999 36 1 1.3501 -4.2260 -1.1951 37 1 3.0386 -6.5539 3.5946 38 1 1.6779 -7.6761 3.3414 39 1 4.4575 -8.6302 2.6776 40 1 3.9917 -8.5243 4.3921 41 1 1.9865 -9.8995 3.9238 42 1 3.4828 -10.7584 3.5012 43 1 1.3651 -9.6038 1.7027 44 1 2.1971 -11.1738 1.6118 45 1 4.3381 -9.6145 1.2219 46 1 3.2629 -10.0553 -0.1274 47 1 0.6263 -2.0867 1.2805 48 1 2.2297 -1.9687 2.0680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972452558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:26 Heat of formation + Delta-G solvation = 50.534940 kcal Electronic energy + Delta-G solvation = -29258.030352 eV Core-core repulsion = 25316.912551 eV Total energy + Delta-G solvation = -3941.117802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.20626 -39.72365 -38.51626 -37.42504 -34.85971 -34.17752 -32.20813 -31.90402 -31.23684 -29.76435 -28.02972 -26.57523 -26.07981 -25.15711 -24.88444 -22.82429 -22.26465 -21.09739 -20.07587 -19.37588 -19.15643 -17.97342 -17.26822 -17.04417 -16.76660 -15.84133 -15.73788 -15.24146 -15.16439 -14.69951 -14.14902 -13.98656 -13.73457 -13.63479 -13.35452 -13.29001 -12.79904 -12.71535 -12.45538 -12.39886 -12.28319 -12.14098 -11.91370 -11.54114 -11.39662 -11.26511 -10.94831 -10.90467 -10.79449 -10.75377 -10.51497 -10.49984 -10.35957 -10.27225 -10.03658 -9.87914 -9.81552 -9.27349 -8.60960 -8.38039 -6.82120 -5.77673 -3.25781 1.05670 1.55778 2.72479 2.99652 3.25050 3.37364 3.42758 3.43690 3.88961 4.22976 4.37161 4.45310 4.46172 4.57221 4.64727 4.73736 4.94295 4.99645 5.02713 5.13712 5.27153 5.34552 5.37153 5.38186 5.43759 5.54939 5.58238 5.58950 5.62550 5.69832 5.81875 5.82793 5.86437 5.92751 5.96307 6.05007 6.15697 6.29323 6.38166 6.49900 6.59243 6.74988 6.86089 7.30892 7.64144 7.68396 7.76382 7.88293 8.21450 8.33924 9.16832 9.79000 10.28111 11.26608 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.002412 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.026531 B =11605.656228 C =12065.517460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.583 5.583 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.109 3.891 15 N -0.597 5.597 16 C 0.604 3.396 17 O -0.528 6.528 18 C -0.012 4.012 19 N -0.329 5.329 20 O 0.120 5.880 21 C -0.041 4.041 22 C -0.146 4.146 23 C -0.048 4.048 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.037 4.037 28 C 0.088 3.912 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.002 0.998 32 H 0.255 0.745 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -26.662 -0.634 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.014 4.014 15 N -0.330 5.330 16 C 0.390 3.610 17 O -0.404 6.404 18 C -0.170 4.170 19 N -0.032 5.032 20 O 0.046 5.954 21 C -0.104 4.104 22 C -0.151 4.151 23 C -0.085 4.085 24 C -0.162 4.162 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.075 4.075 28 C -0.035 4.035 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.548 -25.657 -0.957 26.075 hybrid contribution 0.248 0.751 0.450 0.911 sum 4.796 -24.906 -0.507 25.368 Atomic orbital electron populations 1.20825 0.82433 0.95667 0.99722 1.43852 1.01886 0.99812 1.84812 1.19167 0.98798 0.85175 1.36051 0.91240 1.25072 0.97945 0.98711 0.97640 1.70063 1.19911 1.27602 1.37139 0.86290 0.78458 0.83521 0.77972 1.20984 1.21597 1.20836 1.21511 0.96429 0.85673 0.90085 0.90250 1.23250 1.02886 0.92639 1.00596 1.22095 1.01463 0.98689 0.79191 1.48386 1.67213 1.09364 1.08038 1.16478 0.78163 0.80879 0.85497 1.90773 1.52490 1.83977 1.13113 1.23214 1.06893 0.97156 0.89763 1.74545 1.15369 0.94692 1.18548 1.84767 1.63848 1.15194 1.31549 1.24066 1.04802 0.97480 0.84102 1.20657 1.05390 0.90432 0.98606 1.20014 1.00836 0.99517 0.88153 1.21715 0.98445 0.93779 1.02298 1.21525 1.00360 0.97671 0.96486 1.21592 0.98642 1.01118 0.94136 1.20247 1.01081 0.84948 1.01187 1.23240 1.01245 0.78518 1.00543 0.94804 0.93853 0.97925 0.93524 0.90465 0.90513 0.91473 0.91739 0.88912 0.90022 0.91261 0.90982 0.91445 0.91682 0.91250 0.90445 0.88238 0.89324 0.90940 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.56 59.84 0.45 4.27 16 2 N -0.58 -14.36 2.96 -170.90 -0.51 -14.87 16 3 C -0.26 -7.10 9.60 -15.06 -0.14 -7.25 16 4 H 0.07 1.83 7.87 -52.49 -0.41 1.41 16 5 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 6 N -0.90 -26.13 10.77 55.49 0.60 -25.53 16 7 Si 0.91 21.68 29.58 -169.99 -5.03 16.65 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.17 3.56 3.55 -65.66 -0.23 3.32 16 12 H 0.08 1.64 7.96 -51.93 -0.41 1.23 16 13 C -0.15 -2.60 6.49 -24.90 -0.16 -2.77 16 14 C 0.11 1.72 5.56 -3.07 -0.02 1.70 16 15 N -0.60 -10.72 3.32 -171.32 -0.57 -11.29 16 16 C 0.60 10.92 7.88 -12.10 -0.10 10.83 16 17 O -0.53 -10.65 15.76 5.36 0.08 -10.57 16 18 C -0.01 -0.18 7.02 -82.71 -0.58 -0.76 16 19 N -0.33 -4.69 9.78 33.31 0.33 -4.37 16 20 O 0.12 1.43 11.18 18.14 0.20 1.63 16 21 C -0.04 -0.41 6.64 -35.51 -0.24 -0.64 16 22 C -0.15 -1.79 5.72 -104.86 -0.60 -2.39 16 23 C -0.05 -0.51 5.37 -28.01 -0.15 -0.66 16 24 C -0.13 -0.90 5.55 -26.84 -0.15 -1.05 16 25 C -0.12 -0.66 5.62 -27.20 -0.15 -0.82 16 26 C -0.12 -0.62 5.64 -26.81 -0.15 -0.77 16 27 C -0.04 -0.21 5.55 -27.82 -0.15 -0.37 16 28 C 0.09 1.77 6.46 -2.42 -0.02 1.75 16 29 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 30 H 0.04 1.12 7.38 -51.93 -0.38 0.74 16 31 H 0.00 0.05 6.37 -51.92 -0.33 -0.28 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.34 6.47 -51.93 -0.34 1.00 16 35 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 36 H 0.06 0.98 7.79 -51.93 -0.40 0.57 16 37 H 0.09 1.18 7.08 -51.93 -0.37 0.81 16 38 H 0.08 0.84 7.82 -51.93 -0.41 0.43 16 39 H 0.07 0.49 5.68 -51.93 -0.30 0.19 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.10 0.47 6.37 -51.92 -0.33 0.14 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 1.53 6.96 -51.93 -0.36 1.17 16 48 H 0.08 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -31.23 369.66 -9.11 -40.34 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.31 Total: -2.04 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -2.48 Total: 4.46 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.15 Total: -56.05 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.29 Total: -8.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.23 -9.11 -40.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972452558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.877 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds