Wall clock time and date at job start Tue Mar 31 2020 17:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36941 * 120.00082 * 2 1 4 4 H 1.07999 * 120.00185 * 203.24511 * 3 2 1 5 5 C 1.38814 * 119.99808 * 23.25214 * 3 2 1 6 6 N 1.31627 * 119.99946 * 13.75671 * 5 3 2 7 7 Si 1.86793 * 120.00246 * 193.75794 * 5 3 2 8 8 H 1.48499 * 109.47290 * 59.99706 * 7 5 3 9 9 H 1.48501 * 109.47204 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47124 * 299.99866 * 7 5 3 11 11 C 1.46502 * 120.00109 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.88480 * 183.87748 * 11 2 1 13 13 C 1.55153 * 111.00562 * 59.99788 * 11 2 1 14 14 C 1.54321 * 102.94305 * 206.42441 * 13 11 2 15 15 N 1.47022 * 107.26921 * 22.19208 * 14 13 11 16 16 C 1.34783 * 125.64531 * 181.02148 * 15 14 13 17 17 O 1.21501 * 119.99719 * 180.02562 * 16 15 14 18 18 C 1.48330 * 120.00410 * 0.02766 * 16 15 14 19 19 N 1.31344 * 127.12674 * 0.02562 * 18 16 15 20 20 O 1.21245 * 111.48313 * 179.97438 * 19 18 16 21 21 C 1.33635 * 111.64215 * 359.63563 * 20 19 18 22 22 C 1.34990 * 106.59821 * 0.64215 * 21 20 19 23 23 C 1.50077 * 126.59986 * 178.48418 * 22 21 20 24 24 C 1.53331 * 108.96949 * 27.97754 * 23 22 21 25 25 C 1.52461 * 109.50058 * 271.48904 * 24 23 22 26 26 C 1.52624 * 111.02279 * 61.39714 * 25 24 23 27 27 C 1.50607 * 128.02718 * 180.75741 * 21 20 19 28 28 C 1.47415 * 108.70471 * 1.28819 * 15 14 13 29 29 H 1.09006 * 109.47361 * 275.15182 * 1 2 3 30 30 H 1.08997 * 109.47467 * 35.15270 * 1 2 3 31 31 H 1.09008 * 109.47380 * 155.15488 * 1 2 3 32 32 H 0.96995 * 120.00274 * 180.02562 * 6 5 3 33 33 H 1.08997 * 110.72063 * 88.05962 * 13 11 2 34 34 H 1.08998 * 110.87101 * 324.85780 * 13 11 2 35 35 H 1.09000 * 109.88507 * 262.77344 * 14 13 11 36 36 H 1.08997 * 110.01421 * 141.68361 * 14 13 11 37 37 H 1.09002 * 109.55736 * 147.82429 * 23 22 21 38 38 H 1.09002 * 109.55366 * 268.13118 * 23 22 21 39 39 H 1.08995 * 109.46472 * 31.46548 * 24 23 22 40 40 H 1.08995 * 109.46895 * 151.45426 * 24 23 22 41 41 H 1.08993 * 109.10508 * 301.01284 * 25 24 23 42 42 H 1.09002 * 109.15809 * 181.81385 * 25 24 23 43 43 H 1.08996 * 109.39920 * 273.56162 * 26 25 24 44 44 H 1.09004 * 109.39851 * 153.73545 * 26 25 24 45 45 H 1.09009 * 109.53294 * 106.96612 * 27 21 20 46 46 H 1.09000 * 109.60775 * 346.77151 * 27 21 20 47 47 H 1.09001 * 110.37341 * 94.48378 * 28 15 14 48 48 H 1.09000 * 110.36958 * 216.80692 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1639 1.2239 -0.3691 5 6 1.5401 2.3393 0.4746 6 7 0.4239 2.2564 1.1672 7 14 2.3039 4.0088 0.1304 8 1 2.3844 4.2233 -1.3369 9 1 1.4655 5.0720 0.7403 10 1 3.6688 4.0584 0.7135 11 6 2.1974 -1.2687 -0.0006 12 1 3.2717 -1.0972 0.0684 13 6 1.8483 -2.1120 -1.2553 14 6 2.1063 -3.5582 -0.7826 15 7 2.0265 -3.5583 0.6854 16 6 2.2132 -4.6293 1.4821 17 8 2.1220 -4.5126 2.6881 18 6 2.5300 -5.9504 0.8867 19 7 2.6614 -6.2341 -0.3890 20 8 2.9231 -7.4057 -0.5587 21 6 3.0092 -8.0645 0.6009 22 6 2.7525 -7.1658 1.5749 23 6 2.7005 -7.4356 3.0503 24 6 3.6181 -8.6210 3.3728 25 6 2.8346 -9.9221 3.2396 26 6 2.3239 -10.1101 1.8136 27 6 3.3294 -9.5197 0.8196 28 6 1.7020 -2.1945 1.1414 29 1 -0.3634 0.0923 1.0236 30 1 -0.3634 0.8402 -0.5917 31 1 -0.3634 -0.9326 -0.4318 32 1 -0.0023 3.0623 1.4985 33 1 2.5042 -1.8553 -2.0871 34 1 0.8032 -1.9782 -1.5346 35 1 3.0980 -3.8806 -1.0999 36 1 1.3501 -4.2260 -1.1951 37 1 3.0386 -6.5539 3.5946 38 1 1.6779 -7.6761 3.3414 39 1 4.4575 -8.6302 2.6776 40 1 3.9917 -8.5243 4.3921 41 1 1.9865 -9.8995 3.9238 42 1 3.4828 -10.7584 3.5012 43 1 1.3651 -9.6038 1.7027 44 1 2.1971 -11.1738 1.6118 45 1 4.3381 -9.6145 1.2219 46 1 3.2629 -10.0553 -0.1274 47 1 0.6263 -2.0867 1.2805 48 1 2.2297 -1.9687 2.0680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972452558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:25 Heat of formation + Delta-G solvation = 32.969687 kcal Electronic energy + Delta-G solvation = -29258.792039 eV Core-core repulsion = 25316.912551 eV Total energy + Delta-G solvation = -3941.879488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.22559 -41.20399 -39.28685 -38.87010 -36.67390 -35.19452 -33.57374 -32.92453 -32.25841 -31.35609 -29.63575 -28.11153 -27.36067 -26.26329 -25.79242 -24.49175 -23.66122 -22.04470 -21.08549 -20.63907 -20.34503 -19.04564 -18.94070 -18.31536 -17.97454 -17.55217 -16.75869 -16.55993 -16.26733 -15.79795 -15.70052 -15.16280 -14.94127 -14.71613 -14.47895 -14.37662 -14.30688 -14.21790 -13.95731 -13.60158 -13.40529 -13.25170 -12.91881 -12.84638 -12.76685 -12.51306 -12.44390 -12.27544 -12.15179 -12.12880 -11.87136 -11.80046 -11.62347 -11.55489 -11.41532 -11.35603 -11.18004 -10.66567 -10.12025 -9.89179 -8.84808 -7.86883 -5.37928 -0.02962 0.59651 1.46389 1.48131 1.53935 1.57254 1.90981 1.96806 2.48290 2.72546 3.23649 3.35436 3.43937 3.62835 3.80917 3.82168 3.90651 3.94334 4.06507 4.10277 4.14446 4.20718 4.25221 4.33934 4.38201 4.43646 4.57373 4.72330 4.74337 4.76786 4.81398 4.88299 4.89236 4.94796 5.02804 5.07292 5.11162 5.17976 5.21003 5.28338 5.34119 5.35353 5.43492 5.53256 5.60789 5.66008 6.21737 6.27584 6.68920 6.98984 7.09107 7.78298 8.23417 9.15775 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.002412 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.026531 B =11605.656228 C =12065.517460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.598 5.598 3 C -0.271 4.271 4 H 0.075 0.925 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.973 3.027 8 H -0.275 1.275 9 H -0.295 1.295 10 H -0.276 1.276 11 C 0.169 3.831 12 H 0.076 0.924 13 C -0.138 4.138 14 C 0.119 3.881 15 N -0.601 5.601 16 C 0.600 3.400 17 O -0.559 6.559 18 C -0.041 4.041 19 N -0.340 5.340 20 O 0.134 5.866 21 C -0.016 4.016 22 C -0.164 4.164 23 C -0.046 4.046 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.037 4.037 28 C 0.100 3.900 29 H 0.003 0.997 30 H 0.020 0.980 31 H 0.033 0.967 32 H 0.250 0.750 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.104 0.896 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.058 0.942 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -29.847 -2.283 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.400 4.400 4 H 0.093 0.907 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.801 3.199 8 H -0.201 1.201 9 H -0.222 1.222 10 H -0.202 1.202 11 C 0.060 3.940 12 H 0.094 0.906 13 C -0.177 4.177 14 C -0.004 4.004 15 N -0.333 5.333 16 C 0.388 3.612 17 O -0.438 6.438 18 C -0.197 4.197 19 N -0.040 5.040 20 O 0.057 5.943 21 C -0.080 4.080 22 C -0.169 4.169 23 C -0.084 4.084 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.074 4.074 28 C -0.025 4.025 29 H 0.022 0.978 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.138 0.862 46 H 0.133 0.867 47 H 0.077 0.923 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.069 -28.860 -2.633 29.609 hybrid contribution -0.185 1.593 0.974 1.877 sum 5.883 -27.267 -1.659 27.944 Atomic orbital electron populations 1.20528 0.82579 0.96141 0.97676 1.44018 1.02068 1.00703 1.85143 1.19536 0.99084 0.86258 1.35157 0.90693 1.25871 0.98660 1.02154 0.97912 1.70237 1.21405 1.27976 1.38589 0.85258 0.77583 0.79093 0.77981 1.20084 1.22175 1.20154 1.21618 0.95828 0.84621 0.91940 0.90567 1.23102 1.03207 0.92259 0.99159 1.22123 1.02617 0.98028 0.77604 1.48410 1.67372 1.08492 1.09056 1.16898 0.77283 0.81823 0.85212 1.90745 1.53732 1.84724 1.14551 1.22942 1.09347 0.96548 0.90880 1.74505 1.15740 0.95858 1.17916 1.84737 1.62777 1.14477 1.32279 1.24795 1.01980 0.98773 0.82403 1.20894 1.06363 0.89915 0.99741 1.20009 1.01459 0.99862 0.87063 1.21709 0.98037 0.93210 1.02710 1.21523 1.00414 0.97067 0.96768 1.21618 0.97494 1.02478 0.93713 1.20584 1.02122 0.81839 1.02885 1.22853 0.99925 0.80176 0.99535 0.97834 0.96101 0.94893 0.94122 0.88507 0.90640 0.90188 0.90499 0.92019 0.90379 0.90623 0.90538 0.91776 0.89423 0.93013 0.87730 0.86224 0.86690 0.92342 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.72 7.56 127.77 0.97 9.68 16 2 N -0.60 -29.93 2.96 -694.60 -2.05 -31.98 16 3 C -0.27 -14.78 9.60 84.03 0.81 -13.98 16 4 H 0.08 3.93 7.87 -2.91 -0.02 3.91 16 5 C -0.05 -2.83 5.08 84.86 0.43 -2.39 16 6 N -0.94 -55.87 10.77 21.65 0.23 -55.64 16 7 Si 0.97 45.09 29.58 68.60 2.03 47.12 16 8 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 9 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 C 0.17 6.97 3.55 46.46 0.16 7.13 16 12 H 0.08 3.17 7.96 -2.39 -0.02 3.15 16 13 C -0.14 -4.47 6.49 31.78 0.21 -4.27 16 14 C 0.12 3.58 5.56 86.73 0.48 4.07 16 15 N -0.60 -21.87 3.32 -814.22 -2.71 -24.58 16 16 C 0.60 22.37 7.88 86.93 0.68 23.06 16 17 O -0.56 -23.88 15.76 -3.72 -0.06 -23.94 16 18 C -0.04 -1.23 7.02 42.69 0.30 -0.93 16 19 N -0.34 -9.21 9.78 -49.02 -0.48 -9.69 16 20 O 0.13 2.86 11.18 74.97 0.84 3.70 16 21 C -0.02 -0.27 6.64 24.91 0.17 -0.11 16 22 C -0.16 -3.91 5.72 -20.02 -0.11 -4.02 16 23 C -0.05 -0.99 5.37 29.76 0.16 -0.83 16 24 C -0.12 -1.50 5.55 30.53 0.17 -1.33 16 25 C -0.12 -0.93 5.62 30.29 0.17 -0.76 16 26 C -0.12 -0.79 5.64 30.54 0.17 -0.62 16 27 C -0.04 -0.27 5.55 29.89 0.17 -0.10 16 28 C 0.10 4.14 6.46 86.93 0.56 4.70 16 29 H 0.00 0.19 7.33 -2.38 -0.02 0.17 16 30 H 0.02 1.09 7.38 -2.39 -0.02 1.07 16 31 H 0.03 1.40 6.37 -2.38 -0.02 1.38 16 32 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.07 2.50 6.47 -2.39 -0.02 2.49 16 35 H 0.08 2.25 7.69 -2.39 -0.02 2.24 16 36 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 37 H 0.06 1.68 7.08 -2.39 -0.02 1.66 16 38 H 0.08 1.65 7.82 -2.39 -0.02 1.63 16 39 H 0.08 0.86 5.68 -2.39 -0.01 0.84 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.56 8.08 -2.39 -0.02 0.54 16 42 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.05 0.57 7.79 -2.39 -0.02 0.55 16 44 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 45 H 0.12 0.53 6.37 -2.38 -0.02 0.52 16 46 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.06 2.58 6.96 -2.39 -0.02 2.56 16 48 H 0.05 2.43 8.03 -2.39 -0.02 2.41 16 Total: -1.00 -70.76 369.66 4.26 -66.49 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.97 Total: 9.20 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 5.49 Total: 19.30 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -5.01 Total: -121.89 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.78 Total: -20.23 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -70.76 4.26 -66.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972452558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.464 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds