Wall clock time and date at job start Tue Mar 31 2020 17:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99853 * 2 1 4 4 H 1.08001 * 119.99786 * 203.31127 * 3 2 1 5 5 C 1.38808 * 119.99852 * 23.31403 * 3 2 1 6 6 N 1.31619 * 120.00285 * 14.00550 * 5 3 2 7 7 Si 1.86801 * 119.99781 * 194.00990 * 5 3 2 8 8 H 1.48503 * 109.47274 * 89.99623 * 7 5 3 9 9 H 1.48500 * 109.47360 * 210.00014 * 7 5 3 10 10 H 1.48503 * 109.47150 * 330.00159 * 7 5 3 11 11 C 1.46494 * 120.00107 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.91819 * 182.44769 * 11 2 1 13 13 C 1.55161 * 111.00220 * 306.34897 * 11 2 1 14 14 C 1.54334 * 103.01979 * 153.38037 * 13 11 2 15 15 N 1.47020 * 107.26645 * 338.13803 * 14 13 11 16 16 C 1.34777 * 125.64654 * 178.84596 * 15 14 13 17 17 O 1.21616 * 119.99876 * 179.68973 * 16 15 14 18 18 C 1.47419 * 120.00310 * 359.69973 * 16 15 14 19 19 C 1.36096 * 126.45221 * 180.02562 * 18 16 15 20 20 O 1.34252 * 106.95070 * 179.73933 * 19 18 16 21 21 C 1.34050 * 108.22694 * 0.38074 * 20 19 18 22 22 C 1.50700 * 125.37793 * 179.87446 * 21 20 19 23 23 C 1.54889 * 110.48274 * 302.93194 * 22 21 20 24 24 C 1.55245 * 102.58600 * 156.67839 * 23 22 21 25 25 C 1.54269 * 104.22981 * 322.08487 * 24 23 22 26 26 C 1.53874 * 106.59734 * 23.61218 * 25 24 23 27 27 N 1.29939 * 109.24262 * 359.60804 * 21 20 19 28 28 C 1.47418 * 108.70299 * 358.58892 * 15 14 13 29 29 H 1.09000 * 109.47247 * 275.16836 * 1 2 3 30 30 H 1.09001 * 109.47653 * 35.16487 * 1 2 3 31 31 H 1.09002 * 109.47245 * 155.16819 * 1 2 3 32 32 H 0.96996 * 119.99702 * 179.97438 * 6 5 3 33 33 H 1.08996 * 110.71792 * 271.93590 * 13 11 2 34 34 H 1.08994 * 110.72320 * 35.03806 * 13 11 2 35 35 H 1.08999 * 109.99435 * 218.66270 * 14 13 11 36 36 H 1.08999 * 109.78275 * 97.49523 * 14 13 11 37 37 H 1.07997 * 126.52034 * 359.97438 * 19 18 16 38 38 H 1.09006 * 110.43368 * 180.39343 * 22 21 20 39 39 H 1.09000 * 110.75927 * 275.06806 * 23 22 21 40 40 H 1.08997 * 110.75662 * 38.44666 * 23 22 21 41 41 H 1.08997 * 110.46720 * 203.39524 * 24 23 22 42 42 H 1.09005 * 110.58131 * 80.83153 * 24 23 22 43 43 H 1.08998 * 110.02964 * 264.32558 * 25 24 23 44 44 H 1.09000 * 110.02689 * 142.89643 * 25 24 23 45 45 H 1.09004 * 110.03153 * 240.71270 * 26 25 24 46 46 H 1.09003 * 110.07334 * 119.31017 * 26 25 24 47 47 H 1.09001 * 110.37164 * 143.19684 * 28 15 14 48 48 H 1.09002 * 110.36552 * 265.51612 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1636 1.2241 -0.3701 5 6 1.5406 2.3390 0.4758 6 7 0.4277 2.2555 1.1735 7 14 2.3003 4.0092 0.1256 8 1 1.7546 4.5442 -1.1477 9 1 1.9762 4.9427 1.2341 10 1 3.7743 3.8685 0.0119 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0971 0.0430 13 6 1.7320 -2.1801 1.1657 14 6 2.0326 -3.5993 0.6391 15 7 2.0990 -3.5158 -0.8272 16 6 2.3641 -4.5408 -1.6611 17 8 2.3881 -4.3563 -2.8630 18 6 2.6247 -5.8857 -1.1166 19 6 2.9049 -7.0081 -1.8335 20 8 3.0781 -8.0039 -0.9499 21 6 2.8999 -7.5068 0.2822 22 6 3.0019 -8.2935 1.5636 23 6 2.0177 -9.4893 1.5453 24 6 2.6579 -10.4700 2.5644 25 6 4.1752 -10.3308 2.3228 26 6 4.3939 -8.9470 1.6866 27 7 2.6308 -6.2384 0.1976 28 6 1.8216 -2.1264 -1.2345 29 1 -0.3634 0.0926 1.0235 30 1 -0.3634 0.8401 -0.5918 31 1 -0.3634 -0.9327 -0.4316 32 1 0.0023 3.0612 1.5063 33 1 2.3046 -1.9723 2.0696 34 1 0.6649 -2.0561 1.3498 35 1 1.2373 -4.2831 0.9358 36 1 2.9878 -3.9448 1.0344 37 1 2.9782 -7.0825 -2.9084 38 1 2.8052 -7.6505 2.4216 39 1 1.0262 -9.1787 1.8747 40 1 1.9733 -9.9379 0.5529 41 1 2.3322 -11.4912 2.3668 42 1 2.4058 -10.1808 3.5847 43 1 4.5184 -11.1121 1.6447 44 1 4.7113 -10.3955 3.2696 45 1 4.8434 -9.0566 0.6996 46 1 5.0366 -8.3396 2.3238 47 1 2.4386 -1.8514 -2.0899 48 1 0.7650 -2.0049 -1.4733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972637617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:42 Heat of formation + Delta-G solvation = 9.052924 kcal Electronic energy + Delta-G solvation = -28711.048647 eV Core-core repulsion = 24768.132051 eV Total energy + Delta-G solvation = -3942.916597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.61854 -39.61726 -38.46478 -37.37202 -35.09951 -34.65565 -31.76359 -31.42227 -29.71580 -29.18945 -28.48991 -27.87082 -26.04248 -24.73653 -22.85992 -22.74753 -22.06752 -21.03262 -20.69615 -19.26159 -19.13036 -17.60152 -17.05711 -16.93169 -16.77489 -16.10073 -15.87237 -15.70808 -15.10480 -14.62416 -14.20134 -14.00984 -13.88577 -13.73894 -13.27482 -13.26182 -12.66572 -12.46097 -12.39408 -12.17794 -12.13028 -11.86658 -11.68111 -11.58640 -11.37286 -11.31828 -11.22525 -10.94996 -10.90644 -10.87385 -10.64884 -10.47612 -10.43576 -10.19698 -10.01191 -9.86103 -9.76800 -9.16443 -8.58211 -8.28184 -6.78740 -5.75100 -3.22581 0.98784 1.89765 2.35609 3.10754 3.37056 3.38686 3.45248 3.46239 3.59749 4.09116 4.11968 4.39816 4.48300 4.63792 4.70499 4.94658 4.98201 4.99406 5.03445 5.15337 5.17684 5.31403 5.36367 5.38169 5.47049 5.48326 5.51456 5.58684 5.65552 5.69852 5.72933 5.79245 5.84227 5.87515 5.89246 6.03534 6.19540 6.35774 6.48069 6.59893 6.68508 6.79614 6.93131 7.34243 7.35051 7.70497 7.76494 7.79558 8.26936 8.37125 9.20007 9.82403 10.31420 11.29425 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.002329 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.742451 B =12021.809461 C =12666.638721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.153 4.153 14 C 0.117 3.883 15 N -0.593 5.593 16 C 0.607 3.393 17 O -0.547 6.547 18 C -0.059 4.059 19 C 0.004 3.996 20 O -0.196 6.196 21 C 0.201 3.799 22 C 0.003 3.997 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.120 4.120 27 N -0.451 5.451 28 C 0.085 3.915 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.002 0.998 32 H 0.253 0.747 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.230 0.770 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.849 -26.880 2.449 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.006 4.006 15 N -0.325 5.325 16 C 0.394 3.606 17 O -0.426 6.426 18 C -0.179 4.179 19 C -0.069 4.069 20 O -0.082 6.082 21 C -0.008 4.008 22 C -0.017 4.017 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.159 4.159 27 N -0.180 5.180 28 C -0.039 4.039 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.650 -26.241 2.376 26.755 hybrid contribution 0.378 0.605 -0.764 1.045 sum 5.028 -25.636 1.612 26.174 Atomic orbital electron populations 1.20815 0.82490 0.95607 0.99687 1.43814 1.01849 0.99865 1.84981 1.19225 0.98716 0.85290 1.35672 0.91234 1.25028 0.97995 0.98593 0.97809 1.70071 1.20235 1.27354 1.37189 0.86227 0.78756 0.83945 0.77430 1.21433 1.21754 1.20431 1.21405 0.96406 0.85810 0.90078 0.90348 1.23266 1.02719 0.92995 1.00369 1.22066 1.01720 0.98125 0.78737 1.48236 1.66909 1.09222 1.08091 1.16361 0.77625 0.81529 0.85050 1.90811 1.54243 1.83592 1.13915 1.21819 1.10315 0.96500 0.89244 1.25245 1.00691 0.84716 0.96295 1.84334 1.67815 1.39088 1.16937 1.26182 0.99527 0.89093 0.86022 1.20678 0.97504 0.95200 0.88293 1.22693 0.98270 0.94220 1.00597 1.22418 0.94928 0.99477 0.99301 1.22132 0.96511 0.96511 1.00953 1.22255 0.95176 0.96364 1.02073 1.70963 1.17185 1.11175 1.18723 1.23087 1.01381 0.78834 1.00612 0.94736 0.94012 0.97945 0.93679 0.90545 0.90692 0.91614 0.91288 0.75391 0.86210 0.90408 0.90654 0.91106 0.90998 0.91457 0.91273 0.91095 0.90553 0.90770 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.61 59.85 0.46 4.30 16 2 N -0.58 -14.46 2.96 -171.03 -0.51 -14.97 16 3 C -0.26 -7.06 9.60 -15.06 -0.14 -7.21 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.44 16 5 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 6 N -0.90 -26.04 10.79 55.49 0.60 -25.45 16 7 Si 0.91 21.78 29.58 -169.99 -5.03 16.76 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.57 3.54 -65.78 -0.23 3.34 16 12 H 0.08 1.63 7.96 -51.93 -0.41 1.22 16 13 C -0.15 -2.73 6.51 -24.89 -0.16 -2.90 16 14 C 0.12 1.85 5.53 -3.06 -0.02 1.84 16 15 N -0.59 -10.49 3.33 -171.78 -0.57 -11.06 16 16 C 0.61 10.66 7.85 -12.52 -0.10 10.57 16 17 O -0.55 -10.82 17.15 5.26 0.09 -10.73 16 18 C -0.06 -0.85 6.83 -83.02 -0.57 -1.42 16 19 C 0.00 0.05 11.95 29.96 0.36 0.41 16 20 O -0.20 -2.09 10.52 6.52 0.07 -2.02 16 21 C 0.20 2.16 6.78 -13.08 -0.09 2.08 16 22 C 0.00 0.02 3.38 -90.12 -0.30 -0.29 16 23 C -0.12 -0.73 6.34 -24.55 -0.16 -0.88 16 24 C -0.12 -0.58 6.84 -24.88 -0.17 -0.75 16 25 C -0.12 -0.59 6.80 -25.61 -0.17 -0.77 16 26 C -0.12 -0.75 6.36 -25.62 -0.16 -0.91 16 27 N -0.45 -6.07 8.84 -7.65 -0.07 -6.14 16 28 C 0.08 1.64 6.46 -2.53 -0.02 1.63 16 29 H 0.03 0.90 7.33 -51.93 -0.38 0.52 16 30 H 0.04 1.09 7.39 -51.93 -0.38 0.71 16 31 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.41 7.08 -51.93 -0.37 1.04 16 35 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 36 H 0.07 1.06 7.62 -51.93 -0.40 0.66 16 37 H 0.23 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.49 7.99 -51.93 -0.42 0.08 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.49 7.72 -51.93 -0.40 0.09 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 48 H 0.07 1.42 6.33 -51.93 -0.33 1.09 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -31.90 382.84 -8.80 -40.70 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.59 Total: -1.94 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -1.57 Total: 9.07 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.55 Total: -57.61 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.16 Total: -12.75 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.90 -8.80 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972637617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.756 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds