Wall clock time and date at job start Tue Mar 31 2020 17:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99853 * 2 1 4 4 H 1.08001 * 119.99786 * 203.31127 * 3 2 1 5 5 C 1.38808 * 119.99852 * 23.31403 * 3 2 1 6 6 N 1.31619 * 120.00285 * 14.00550 * 5 3 2 7 7 Si 1.86801 * 119.99781 * 194.00990 * 5 3 2 8 8 H 1.48503 * 109.47274 * 89.99623 * 7 5 3 9 9 H 1.48500 * 109.47360 * 210.00014 * 7 5 3 10 10 H 1.48503 * 109.47150 * 330.00159 * 7 5 3 11 11 C 1.46494 * 120.00107 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.91819 * 182.44769 * 11 2 1 13 13 C 1.55161 * 111.00220 * 306.34897 * 11 2 1 14 14 C 1.54334 * 103.01979 * 153.38037 * 13 11 2 15 15 N 1.47020 * 107.26645 * 338.13803 * 14 13 11 16 16 C 1.34777 * 125.64654 * 178.84596 * 15 14 13 17 17 O 1.21616 * 119.99876 * 179.68973 * 16 15 14 18 18 C 1.47419 * 120.00310 * 359.69973 * 16 15 14 19 19 C 1.36096 * 126.45221 * 180.02562 * 18 16 15 20 20 O 1.34252 * 106.95070 * 179.73933 * 19 18 16 21 21 C 1.34050 * 108.22694 * 0.38074 * 20 19 18 22 22 C 1.50700 * 125.37793 * 179.87446 * 21 20 19 23 23 C 1.54889 * 110.48274 * 302.93194 * 22 21 20 24 24 C 1.55245 * 102.58600 * 156.67839 * 23 22 21 25 25 C 1.54269 * 104.22981 * 322.08487 * 24 23 22 26 26 C 1.53874 * 106.59734 * 23.61218 * 25 24 23 27 27 N 1.29939 * 109.24262 * 359.60804 * 21 20 19 28 28 C 1.47418 * 108.70299 * 358.58892 * 15 14 13 29 29 H 1.09000 * 109.47247 * 275.16836 * 1 2 3 30 30 H 1.09001 * 109.47653 * 35.16487 * 1 2 3 31 31 H 1.09002 * 109.47245 * 155.16819 * 1 2 3 32 32 H 0.96996 * 119.99702 * 179.97438 * 6 5 3 33 33 H 1.08996 * 110.71792 * 271.93590 * 13 11 2 34 34 H 1.08994 * 110.72320 * 35.03806 * 13 11 2 35 35 H 1.08999 * 109.99435 * 218.66270 * 14 13 11 36 36 H 1.08999 * 109.78275 * 97.49523 * 14 13 11 37 37 H 1.07997 * 126.52034 * 359.97438 * 19 18 16 38 38 H 1.09006 * 110.43368 * 180.39343 * 22 21 20 39 39 H 1.09000 * 110.75927 * 275.06806 * 23 22 21 40 40 H 1.08997 * 110.75662 * 38.44666 * 23 22 21 41 41 H 1.08997 * 110.46720 * 203.39524 * 24 23 22 42 42 H 1.09005 * 110.58131 * 80.83153 * 24 23 22 43 43 H 1.08998 * 110.02964 * 264.32558 * 25 24 23 44 44 H 1.09000 * 110.02689 * 142.89643 * 25 24 23 45 45 H 1.09004 * 110.03153 * 240.71270 * 26 25 24 46 46 H 1.09003 * 110.07334 * 119.31017 * 26 25 24 47 47 H 1.09001 * 110.37164 * 143.19684 * 28 15 14 48 48 H 1.09002 * 110.36552 * 265.51612 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1636 1.2241 -0.3701 5 6 1.5406 2.3390 0.4758 6 7 0.4277 2.2555 1.1735 7 14 2.3003 4.0092 0.1256 8 1 1.7546 4.5442 -1.1477 9 1 1.9762 4.9427 1.2341 10 1 3.7743 3.8685 0.0119 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0971 0.0430 13 6 1.7320 -2.1801 1.1657 14 6 2.0326 -3.5993 0.6391 15 7 2.0990 -3.5158 -0.8272 16 6 2.3641 -4.5408 -1.6611 17 8 2.3881 -4.3563 -2.8630 18 6 2.6247 -5.8857 -1.1166 19 6 2.9049 -7.0081 -1.8335 20 8 3.0781 -8.0039 -0.9499 21 6 2.8999 -7.5068 0.2822 22 6 3.0019 -8.2935 1.5636 23 6 2.0177 -9.4893 1.5453 24 6 2.6579 -10.4700 2.5644 25 6 4.1752 -10.3308 2.3228 26 6 4.3939 -8.9470 1.6866 27 7 2.6308 -6.2384 0.1976 28 6 1.8216 -2.1264 -1.2345 29 1 -0.3634 0.0926 1.0235 30 1 -0.3634 0.8401 -0.5918 31 1 -0.3634 -0.9327 -0.4316 32 1 0.0023 3.0612 1.5063 33 1 2.3046 -1.9723 2.0696 34 1 0.6649 -2.0561 1.3498 35 1 1.2373 -4.2831 0.9358 36 1 2.9878 -3.9448 1.0344 37 1 2.9782 -7.0825 -2.9084 38 1 2.8052 -7.6505 2.4216 39 1 1.0262 -9.1787 1.8747 40 1 1.9733 -9.9379 0.5529 41 1 2.3322 -11.4912 2.3668 42 1 2.4058 -10.1808 3.5847 43 1 4.5184 -11.1121 1.6447 44 1 4.7113 -10.3955 3.2696 45 1 4.8434 -9.0566 0.6996 46 1 5.0366 -8.3396 2.3238 47 1 2.4386 -1.8514 -2.0899 48 1 0.7650 -2.0049 -1.4733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972637617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:41 Heat of formation + Delta-G solvation = -10.538113 kcal Electronic energy + Delta-G solvation = -28711.898179 eV Core-core repulsion = 24768.132051 eV Total energy + Delta-G solvation = -3943.766128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.53823 -41.04697 -39.04398 -38.84919 -36.63249 -35.91941 -33.47496 -32.37694 -31.33559 -29.64369 -29.62346 -29.01261 -28.07358 -26.15861 -24.42603 -23.59527 -23.40447 -21.77787 -21.26586 -20.95680 -20.13457 -18.96624 -18.73652 -17.91658 -17.84304 -17.43095 -16.73655 -16.70398 -16.39144 -16.13126 -15.67849 -15.20383 -14.90275 -14.75522 -14.44669 -14.41910 -14.32915 -14.22941 -13.85313 -13.50111 -12.99300 -12.84308 -12.78034 -12.74689 -12.57404 -12.41129 -12.22476 -12.17923 -12.09856 -12.06231 -11.98547 -11.92845 -11.72654 -11.70207 -11.46383 -11.35316 -11.27161 -10.66034 -10.14073 -9.70335 -8.80962 -7.84648 -5.34494 0.00894 0.90133 1.47022 1.48768 1.49828 1.57274 1.80840 2.12833 2.50179 2.69965 3.26292 3.42447 3.51056 3.59724 3.64431 3.82000 3.90803 3.95613 4.06968 4.18542 4.31704 4.40570 4.44373 4.45553 4.50083 4.53642 4.56594 4.63043 4.69245 4.79044 4.80325 4.88273 4.94754 4.97271 4.98238 5.11679 5.15181 5.19250 5.24759 5.26469 5.30533 5.35955 5.39675 5.51485 5.63603 5.69103 6.30076 6.32905 6.46138 6.91252 7.12219 7.81485 8.26421 9.18241 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.002329 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.742451 B =12021.809461 C =12666.638721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.600 5.600 3 C -0.269 4.269 4 H 0.071 0.929 5 C -0.047 4.047 6 N -0.933 5.933 7 Si 0.969 3.031 8 H -0.288 1.288 9 H -0.293 1.293 10 H -0.269 1.269 11 C 0.169 3.831 12 H 0.075 0.925 13 C -0.142 4.142 14 C 0.133 3.867 15 N -0.598 5.598 16 C 0.607 3.393 17 O -0.576 6.576 18 C -0.094 4.094 19 C 0.031 3.969 20 O -0.189 6.189 21 C 0.211 3.789 22 C 0.000 4.000 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.118 4.118 27 N -0.475 5.475 28 C 0.098 3.902 29 H 0.013 0.987 30 H 0.014 0.986 31 H 0.028 0.972 32 H 0.250 0.750 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.847 -29.183 2.960 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.321 5.321 3 C -0.399 4.399 4 H 0.088 0.912 5 C -0.243 4.243 6 N -0.579 5.579 7 Si 0.797 3.203 8 H -0.215 1.215 9 H -0.220 1.220 10 H -0.193 1.193 11 C 0.060 3.940 12 H 0.093 0.907 13 C -0.181 4.181 14 C 0.011 3.989 15 N -0.330 5.330 16 C 0.396 3.604 17 O -0.457 6.457 18 C -0.213 4.213 19 C -0.044 4.044 20 O -0.075 6.075 21 C 0.002 3.998 22 C -0.019 4.019 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.157 4.157 27 N -0.204 5.204 28 C -0.027 4.027 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.272 0.728 38 H 0.143 0.857 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.669 -28.580 2.896 29.280 hybrid contribution 0.103 1.190 -0.947 1.524 sum 5.771 -27.390 1.950 28.059 Atomic orbital electron populations 1.20525 0.82596 0.95697 0.98028 1.43963 1.02043 1.00754 1.85342 1.19524 0.98874 0.86503 1.34972 0.91157 1.25765 0.98703 1.01777 0.98076 1.70217 1.21509 1.27794 1.38355 0.85240 0.78433 0.79786 0.76797 1.21493 1.21970 1.19331 1.21492 0.95853 0.84881 0.91799 0.90725 1.23111 1.02112 0.93430 0.99496 1.21970 1.02619 0.96747 0.77598 1.48268 1.67303 1.08566 1.08820 1.16737 0.76592 0.82420 0.84655 1.90782 1.55515 1.84316 1.15112 1.21485 1.13665 0.95720 0.90411 1.25720 0.97658 0.83734 0.97265 1.84390 1.67522 1.38652 1.16959 1.26835 0.97584 0.88590 0.86799 1.20936 0.98806 0.95470 0.86738 1.22696 0.98101 0.93879 1.00908 1.22415 0.94568 0.99526 0.99174 1.22131 0.96762 0.95555 1.01374 1.22257 0.94293 0.97221 1.01889 1.70888 1.18685 1.12537 1.18281 1.22733 1.00488 0.79993 0.99482 0.96832 0.96689 0.95369 0.94123 0.89848 0.91552 0.90579 0.90221 0.72779 0.85721 0.90291 0.91101 0.90229 0.90303 0.91110 0.90330 0.91895 0.90215 0.91903 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 7.61 127.77 0.97 9.70 16 2 N -0.60 -30.04 2.96 -695.02 -2.05 -32.09 16 3 C -0.27 -14.75 9.60 84.03 0.81 -13.95 16 4 H 0.07 3.77 7.86 -2.91 -0.02 3.74 16 5 C -0.05 -2.65 5.08 84.86 0.43 -2.22 16 6 N -0.93 -54.73 10.79 21.65 0.23 -54.50 16 7 Si 0.97 45.15 29.58 68.60 2.03 47.18 16 8 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 C 0.17 6.96 3.54 46.39 0.16 7.12 16 12 H 0.07 3.11 7.96 -2.39 -0.02 3.10 16 13 C -0.14 -4.95 6.51 31.79 0.21 -4.75 16 14 C 0.13 4.07 5.53 86.73 0.48 4.55 16 15 N -0.60 -20.84 3.33 -815.65 -2.71 -23.55 16 16 C 0.61 20.97 7.85 86.66 0.68 21.65 16 17 O -0.58 -22.71 17.15 -4.08 -0.07 -22.78 16 18 C -0.09 -2.61 6.83 40.41 0.28 -2.33 16 19 C 0.03 0.64 11.95 67.32 0.80 1.44 16 20 O -0.19 -3.61 10.52 0.43 0.00 -3.61 16 21 C 0.21 4.15 6.78 88.39 0.60 4.75 16 22 C 0.00 0.00 3.38 -10.47 -0.04 -0.04 16 23 C -0.12 -1.17 6.34 32.01 0.20 -0.96 16 24 C -0.12 -0.79 6.84 31.79 0.22 -0.57 16 25 C -0.12 -0.84 6.80 31.32 0.21 -0.63 16 26 C -0.12 -1.21 6.36 31.32 0.20 -1.01 16 27 N -0.47 -12.02 8.84 -293.03 -2.59 -14.61 16 28 C 0.10 3.80 6.46 86.86 0.56 4.36 16 29 H 0.01 0.72 7.33 -2.39 -0.02 0.70 16 30 H 0.01 0.78 7.39 -2.39 -0.02 0.77 16 31 H 0.03 1.22 6.34 -2.39 -0.02 1.20 16 32 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.07 2.46 7.08 -2.39 -0.02 2.44 16 35 H 0.08 2.21 7.76 -2.39 -0.02 2.20 16 36 H 0.08 2.31 7.62 -2.39 -0.02 2.29 16 37 H 0.26 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.78 7.99 -2.39 -0.02 0.76 16 41 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.06 0.75 7.72 -2.39 -0.02 0.74 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 48 H 0.06 2.50 6.33 -2.39 -0.02 2.49 16 Total: -1.00 -68.76 382.84 2.57 -66.19 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.95 Total: 10.68 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 6.78 Total: 27.10 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -7.12 Total: -124.76 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.07 Total: -26.38 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.76 2.57 -66.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972637617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.648 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds