Wall clock time and date at job start Tue Mar 31 2020 17:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00157 * 2 1 4 4 H 1.07999 * 120.00389 * 203.44418 * 3 2 1 5 5 C 1.38820 * 119.99717 * 23.43570 * 3 2 1 6 6 N 1.31620 * 119.99861 * 14.54106 * 5 3 2 7 7 Si 1.86797 * 119.99629 * 194.53942 * 5 3 2 8 8 H 1.48494 * 109.47759 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47094 * 120.00217 * 7 5 3 10 10 H 1.48504 * 109.46722 * 239.99832 * 7 5 3 11 11 C 1.46501 * 120.00483 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64530 * 178.31324 * 11 2 1 13 13 C 1.55451 * 110.70262 * 55.00289 * 11 2 1 14 14 C 1.54909 * 101.45155 * 206.14464 * 13 11 2 15 15 N 1.47419 * 104.92582 * 37.00813 * 14 13 11 16 16 C 1.34780 * 125.64549 * 155.84107 * 15 14 13 17 17 O 1.21589 * 119.99689 * 179.97438 * 16 15 14 18 18 C 1.47506 * 120.00086 * 359.97081 * 16 15 14 19 19 C 1.36826 * 126.94471 * 179.71749 * 18 16 15 20 20 C 1.41258 * 103.84955 * 179.90695 * 19 18 16 21 21 C 1.50696 * 126.70793 * 180.12582 * 20 19 18 22 22 C 1.54266 * 110.03337 * 33.20562 * 21 20 19 23 23 C 1.54968 * 104.16152 * 217.13801 * 22 21 20 24 24 C 1.54894 * 102.77558 * 37.88677 * 23 22 21 25 25 C 1.53878 * 110.03019 * 275.98967 * 21 20 19 26 26 N 1.30136 * 106.58899 * 0.35337 * 20 19 18 27 27 O 1.20881 * 111.98189 * 359.77071 * 26 20 19 28 28 C 1.47022 * 108.70794 * 335.81104 * 15 14 13 29 29 H 1.08995 * 109.47571 * 275.18944 * 1 2 3 30 30 H 1.09001 * 109.47219 * 35.19748 * 1 2 3 31 31 H 1.09000 * 109.46628 * 155.19390 * 1 2 3 32 32 H 0.96999 * 119.99291 * 179.97438 * 6 5 3 33 33 H 1.09003 * 111.11162 * 88.09664 * 13 11 2 34 34 H 1.08999 * 111.01502 * 324.15487 * 13 11 2 35 35 H 1.08999 * 110.36789 * 278.10956 * 14 13 11 36 36 H 1.08997 * 110.36538 * 155.90474 * 14 13 11 37 37 H 1.08007 * 128.07529 * 0.02562 * 19 18 16 38 38 H 1.09000 * 110.01889 * 154.59946 * 21 20 19 39 39 H 1.09000 * 110.48372 * 335.78752 * 22 21 20 40 40 H 1.08998 * 110.48720 * 98.42940 * 22 21 20 41 41 H 1.09000 * 110.72202 * 279.57288 * 23 22 21 42 42 H 1.09000 * 110.76370 * 156.22327 * 23 22 21 43 43 H 1.08996 * 110.48242 * 203.40026 * 24 23 22 44 44 H 1.09006 * 110.48069 * 80.76347 * 24 23 22 45 45 H 1.09007 * 110.03465 * 238.56682 * 25 21 20 46 46 H 1.08999 * 110.03229 * 359.95260 * 25 21 20 47 47 H 1.09001 * 109.87950 * 120.47256 * 28 15 14 48 48 H 1.08993 * 109.88934 * 241.64504 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3385 0.4782 6 7 0.4356 2.2535 1.1868 7 14 2.2926 4.0100 0.1158 8 1 3.5246 3.8341 -0.6943 9 1 1.3180 4.8374 -0.6397 10 1 2.6319 4.6875 1.3930 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.7502 -2.1622 -1.1902 14 6 2.0639 -3.5785 -0.6469 15 7 1.7324 -3.5167 0.7882 16 6 1.4055 -4.5686 1.5649 17 8 1.1503 -4.3993 2.7416 18 6 1.3571 -5.9250 0.9873 19 6 1.0497 -7.0868 1.6413 20 6 1.1471 -8.0759 0.6375 21 6 0.9065 -9.5543 0.8032 22 6 -0.1929 -9.7958 1.8581 23 6 0.2758 -11.0673 2.6099 24 6 1.8107 -10.8740 2.6859 25 6 2.1799 -10.2398 1.3290 26 7 1.4899 -7.4616 -0.4573 27 8 1.6121 -6.2709 -0.2888 28 6 1.8183 -2.1177 1.2322 29 1 -0.3634 0.0929 1.0234 30 1 -0.3634 0.8398 -0.5923 31 1 -0.3632 -0.9329 -0.4312 32 1 0.0108 3.0589 1.5212 33 1 2.3364 -1.9478 -2.0838 34 1 0.6843 -2.0464 -1.3869 35 1 3.1200 -3.8116 -0.7827 36 1 1.4446 -4.3227 -1.1476 37 1 0.7909 -7.2171 2.6818 38 1 0.6124 -9.9936 -0.1499 39 1 -0.2571 -8.9500 2.5426 40 1 -1.1540 -9.9702 1.3744 41 1 0.0270 -11.9643 2.0428 42 1 -0.1585 -11.1077 3.6088 43 1 2.3106 -11.8350 2.8066 44 1 2.0705 -10.2024 3.5043 45 1 2.5032 -11.0124 0.6314 46 1 2.9720 -9.5032 1.4635 47 1 0.8541 -1.7932 1.6234 48 1 2.5848 -2.0190 2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980430812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:31 Heat of formation + Delta-G solvation = 32.240093 kcal Electronic energy + Delta-G solvation = -28736.708707 eV Core-core repulsion = 24794.797582 eV Total energy + Delta-G solvation = -3941.911126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.13349 -41.16207 -39.33590 -39.04353 -36.64060 -35.00468 -33.75424 -32.98510 -31.31293 -29.77762 -29.66194 -29.45902 -28.05915 -26.20449 -24.55432 -24.34802 -23.40637 -21.87131 -21.43480 -20.90957 -20.24859 -19.00288 -18.87216 -18.75748 -17.64257 -17.37254 -17.03528 -16.59997 -16.40866 -16.07126 -15.70742 -15.19539 -15.03385 -14.80922 -14.49358 -14.36271 -14.19197 -14.09458 -13.76647 -13.41148 -13.13906 -12.97954 -12.86732 -12.79446 -12.55392 -12.40584 -12.38652 -12.22543 -12.07023 -12.01547 -11.93638 -11.80424 -11.59423 -11.55300 -11.46156 -11.41838 -11.07827 -10.87353 -10.64138 -9.83929 -8.81710 -7.83318 -5.33902 -0.36525 0.93438 1.33559 1.48491 1.50324 1.60385 1.78380 1.96376 2.51771 2.85858 3.15988 3.29364 3.52331 3.57631 3.69156 3.77598 3.80547 3.93960 4.00539 4.01473 4.27150 4.29923 4.35580 4.42192 4.50248 4.52283 4.58317 4.64843 4.71490 4.77756 4.80107 4.83395 4.86157 4.95676 5.00054 5.07452 5.08126 5.18360 5.26213 5.27684 5.27958 5.35001 5.40496 5.48522 5.66721 5.69918 6.21815 6.31674 6.64641 6.97702 7.12775 7.83199 8.28245 9.19491 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034816 B = 0.002163 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.034243 B =12940.335267 C =13232.556025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.599 5.599 3 C -0.264 4.264 4 H 0.080 0.920 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.261 1.261 9 H -0.293 1.293 10 H -0.296 1.296 11 C 0.166 3.834 12 H 0.089 0.911 13 C -0.138 4.138 14 C 0.101 3.899 15 N -0.597 5.597 16 C 0.610 3.390 17 O -0.555 6.555 18 C -0.081 4.081 19 C -0.144 4.144 20 C 0.031 3.969 21 C -0.016 4.016 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.114 4.114 26 N -0.361 5.361 27 O 0.114 5.886 28 C 0.098 3.902 29 H 0.000 1.000 30 H 0.017 0.983 31 H 0.033 0.967 32 H 0.248 0.752 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.194 0.806 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.046 0.954 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -27.743 -2.481 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.320 5.320 3 C -0.394 4.394 4 H 0.098 0.902 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.185 1.185 9 H -0.220 1.220 10 H -0.223 1.223 11 C 0.057 3.943 12 H 0.107 0.893 13 C -0.178 4.178 14 C -0.020 4.020 15 N -0.328 5.328 16 C 0.396 3.604 17 O -0.435 6.435 18 C -0.147 4.147 19 C -0.166 4.166 20 C -0.127 4.127 21 C -0.035 4.035 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.152 4.152 26 N -0.064 5.064 27 O 0.044 5.956 28 C -0.027 4.027 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.211 0.789 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.205 -27.926 -3.036 28.177 hybrid contribution -0.186 1.648 1.056 1.966 sum 2.019 -26.278 -1.980 26.430 Atomic orbital electron populations 1.20498 0.82988 0.96057 0.97439 1.44117 1.01906 1.01049 1.84941 1.19642 0.99211 0.86172 1.34343 0.90200 1.25863 0.98785 1.02142 0.98113 1.70258 1.22210 1.27706 1.38196 0.85163 0.78085 0.79911 0.77011 1.18530 1.22032 1.22345 1.21650 0.96636 0.84599 0.91378 0.89250 1.23287 1.02689 0.92564 0.99216 1.22684 1.02616 0.98753 0.77991 1.48473 1.65210 1.06792 1.12324 1.16428 0.77864 0.81342 0.84753 1.90850 1.52059 1.84243 1.16321 1.23870 1.08599 0.96231 0.86006 1.23010 1.01718 0.89015 1.02880 1.23978 1.00937 0.99816 0.87957 1.20416 0.97675 0.83883 1.01572 1.22559 0.97341 0.99289 0.96730 1.22509 0.95063 0.97226 1.00875 1.22391 0.96508 1.01111 0.96168 1.22196 0.95424 0.99435 0.98173 1.73706 1.17788 0.90310 1.24568 1.85055 1.65150 1.18779 1.26632 1.22694 1.00802 0.79270 0.99931 0.98171 0.96386 0.94827 0.94313 0.87647 0.91234 0.88435 0.88786 0.78903 0.88430 0.91189 0.90283 0.90205 0.90413 0.90155 0.91779 0.89910 0.92864 0.93549 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.51 7.75 127.77 0.99 9.50 16 2 N -0.60 -28.57 2.93 -695.58 -2.04 -30.61 16 3 C -0.26 -13.84 9.59 84.04 0.81 -13.03 16 4 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 5 C -0.05 -2.95 5.07 84.86 0.43 -2.52 16 6 N -0.94 -55.29 10.83 21.65 0.23 -55.06 16 7 Si 0.97 44.22 29.58 68.60 2.03 46.25 16 8 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 10 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 11 C 0.17 6.18 3.45 46.28 0.16 6.34 16 12 H 0.09 3.19 7.93 -2.39 -0.02 3.17 16 13 C -0.14 -3.92 6.61 32.09 0.21 -3.71 16 14 C 0.10 2.48 6.20 86.86 0.54 3.02 16 15 N -0.60 -18.91 3.33 -815.60 -2.71 -21.62 16 16 C 0.61 19.95 7.85 86.69 0.68 20.63 16 17 O -0.56 -21.91 17.24 -4.00 -0.07 -21.98 16 18 C -0.08 -2.16 7.06 24.38 0.17 -1.99 16 19 C -0.14 -3.24 9.88 22.68 0.22 -3.01 16 20 C 0.03 0.64 6.00 43.55 0.26 0.90 16 21 C -0.02 -0.23 3.43 -10.82 -0.04 -0.27 16 22 C -0.12 -1.40 6.32 31.70 0.20 -1.20 16 23 C -0.12 -1.03 6.91 31.91 0.22 -0.81 16 24 C -0.12 -1.21 6.83 31.67 0.22 -0.99 16 25 C -0.11 -1.40 6.45 31.32 0.20 -1.20 16 26 N -0.36 -8.66 12.04 -48.86 -0.59 -9.25 16 27 O 0.11 2.83 8.57 65.77 0.56 3.39 16 28 C 0.10 3.71 6.51 86.73 0.56 4.28 16 29 H 0.00 0.00 7.25 -2.39 -0.02 -0.02 16 30 H 0.02 0.92 7.42 -2.39 -0.02 0.91 16 31 H 0.03 1.40 6.13 -2.39 -0.01 1.38 16 32 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.07 2.14 6.15 -2.39 -0.01 2.12 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.07 6.27 -2.39 -0.01 2.06 16 37 H 0.19 3.75 7.29 -2.91 -0.02 3.73 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 0.90 6.26 -2.39 -0.01 0.88 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 44 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.05 0.81 7.67 -2.39 -0.02 0.79 16 47 H 0.05 2.07 7.06 -2.39 -0.02 2.05 16 48 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -66.77 378.75 4.22 -62.55 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.96 Total: 10.39 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 5.84 Total: 15.94 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -5.10 Total: -116.54 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.49 Total: -18.59 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -66.77 4.22 -62.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980430812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.788 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds