Wall clock time and date at job start Tue Mar 31 2020 17:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00190 * 2 1 4 4 C 1.50704 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.38358 * 120.34633 * 270.24284 * 4 3 2 6 6 N 1.31929 * 121.07394 * 180.26864 * 5 4 3 7 7 C 1.31694 * 121.88054 * 359.73889 * 6 5 4 8 8 C 1.39513 * 120.57045 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.56378 * 180.02562 * 8 7 6 10 10 O 1.21551 * 120.00333 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99571 * 359.97438 * 9 8 7 12 12 C 1.46505 * 119.99834 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46688 * 324.99372 * 12 11 9 14 14 C 1.52993 * 109.47285 * 84.99806 * 12 11 9 15 15 C 1.52996 * 109.47409 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47163 * 299.99822 * 15 14 12 17 17 C 1.53007 * 109.46743 * 59.99423 * 16 15 14 18 18 H 1.09005 * 109.46920 * 60.00701 * 17 16 15 19 19 N 1.46507 * 109.46948 * 179.97438 * 17 16 15 20 20 C 1.36932 * 120.00302 * 275.00521 * 19 17 16 21 21 H 1.08004 * 119.99768 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00005 * 180.02562 * 20 19 17 23 23 N 1.31613 * 120.00057 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99943 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47088 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47071 * 119.99888 * 24 22 20 27 27 H 1.48499 * 109.47077 * 239.99720 * 24 22 20 28 28 C 1.52996 * 109.47389 * 300.00175 * 17 16 15 29 29 C 1.38354 * 120.34699 * 89.99720 * 4 3 2 30 30 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47242 * 300.00552 * 1 2 3 32 32 H 1.09009 * 109.46761 * 60.00052 * 1 2 3 33 33 H 1.08997 * 109.47260 * 59.99663 * 3 2 1 34 34 H 1.09000 * 109.47178 * 299.99383 * 3 2 1 35 35 H 1.07992 * 119.45975 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.71650 * 179.97438 * 7 6 5 37 37 H 0.97002 * 120.00147 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47246 * 299.99996 * 14 12 11 39 39 H 1.09005 * 109.47203 * 59.99637 * 14 12 11 40 40 H 1.09000 * 109.47814 * 180.02562 * 15 14 12 41 41 H 1.09005 * 109.47304 * 59.99613 * 15 14 12 42 42 H 1.09000 * 109.47160 * 300.00401 * 16 15 14 43 43 H 1.08990 * 109.47410 * 179.97438 * 16 15 14 44 44 H 0.96997 * 119.99314 * 95.00042 * 19 17 16 45 45 H 0.96998 * 120.00254 * 179.97438 * 23 22 20 46 46 H 1.08991 * 109.47521 * 299.99983 * 28 17 16 47 47 H 1.09005 * 109.46606 * 179.97438 * 28 17 16 48 48 H 1.08002 * 120.85984 * 0.02562 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2085 1.1262 1.1949 6 7 5.5240 1.0272 1.2123 7 6 6.2323 0.9760 0.1032 8 6 5.6053 1.0261 -1.1421 9 6 6.4006 0.9680 -2.3870 10 8 5.8438 1.0120 -3.4666 11 7 7.7431 0.8663 -2.3248 12 6 8.5313 0.8093 -3.5585 13 1 7.9755 0.2618 -4.3197 14 6 8.8085 2.2305 -4.0527 15 6 9.6311 2.1710 -5.3413 16 6 10.9571 1.4586 -5.0675 17 6 10.6799 0.0373 -4.5732 18 1 10.1238 -0.5101 -5.3343 19 7 11.9497 -0.6451 -4.3115 20 6 12.6140 -1.2705 -5.3326 21 1 12.2016 -1.2611 -6.3308 22 6 13.8168 -1.9175 -5.0845 23 7 14.3190 -1.9294 -3.8680 24 14 14.7226 -2.7713 -6.4774 25 1 13.9541 -2.6130 -7.7381 26 1 16.0680 -2.1637 -6.6387 27 1 14.8662 -4.2155 -6.1626 28 6 9.8573 0.0969 -3.2845 29 6 4.2099 1.1308 -1.1930 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6886 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.6664 1.1658 2.1281 36 1 7.3079 0.8953 0.1582 37 1 8.1875 0.8316 -1.4633 38 1 7.8638 2.7379 -4.2482 39 1 9.3642 2.7780 -3.2914 40 1 9.8290 3.1834 -5.6933 41 1 9.0750 1.6236 -6.1025 42 1 11.5132 2.0059 -4.3064 43 1 11.5430 1.4158 -5.9856 44 1 12.3198 -0.6537 -3.4150 45 1 15.1592 -2.3818 -3.6946 46 1 10.4134 0.6442 -2.5235 47 1 9.6595 -0.9156 -2.9327 48 1 3.6917 1.1721 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981145053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:09 Heat of formation + Delta-G solvation = -46.819549 kcal Electronic energy + Delta-G solvation = -27788.774740 eV Core-core repulsion = 23843.435331 eV Total energy + Delta-G solvation = -3945.339409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04367 -39.64926 -38.23934 -37.85586 -34.81026 -33.60826 -33.31415 -32.32212 -31.13158 -29.35613 -27.97404 -27.75173 -26.01964 -24.89377 -23.71177 -23.07672 -22.04256 -21.34021 -20.40707 -19.47403 -18.14743 -17.37116 -17.16772 -16.92053 -16.81614 -16.09714 -15.88946 -15.47874 -15.23185 -14.82760 -14.41120 -14.12836 -14.00734 -13.70961 -13.54070 -13.52493 -13.34347 -13.16451 -12.92531 -12.71909 -12.37789 -12.15779 -12.09317 -11.94771 -11.00640 -10.96940 -10.89585 -10.74174 -10.53620 -10.36902 -10.27680 -10.25930 -10.20892 -10.14682 -9.88861 -9.69640 -9.60591 -9.55589 -9.04642 -8.87748 -6.96625 -5.77324 -3.05918 0.25548 0.72140 2.60000 2.94725 3.25566 3.43295 3.49404 3.51271 3.64458 3.89828 4.25371 4.31970 4.44128 4.49448 4.57524 4.63289 4.76386 4.87545 4.92065 4.93909 5.04338 5.09583 5.16729 5.21949 5.30068 5.49101 5.57976 5.61621 5.66452 5.68259 5.74450 5.85628 5.95374 6.00604 6.09095 6.12598 6.26335 6.30496 6.48745 6.51422 6.58536 6.59519 6.71453 6.95649 7.11419 7.36649 7.43014 7.71185 8.04713 8.41349 9.52713 10.09786 10.44543 11.45433 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.001977 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.781565 B =14159.216149 C =14449.723600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.154 4.154 5 C 0.142 3.858 6 N -0.486 5.486 7 C 0.141 3.859 8 C -0.185 4.185 9 C 0.563 3.437 10 O -0.534 6.534 11 N -0.716 5.716 12 C 0.149 3.851 13 H 0.090 0.910 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.183 3.817 18 H 0.049 0.951 19 N -0.724 5.724 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.130 4.130 29 C 0.004 3.996 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.399 0.601 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.810 10.172 10.413 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.156 4.156 5 C -0.015 4.015 6 N -0.193 5.193 7 C -0.017 4.017 8 C -0.191 4.191 9 C 0.348 3.652 10 O -0.411 6.411 11 N -0.366 5.366 12 C 0.045 3.955 13 H 0.108 0.892 14 C -0.163 4.163 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.073 3.927 18 H 0.067 0.933 19 N -0.364 5.364 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.169 4.169 29 C -0.023 4.023 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.234 0.766 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.572 9.895 10.267 29.278 hybrid contribution 0.346 -0.221 -0.757 0.861 sum -25.226 9.674 9.509 28.642 Atomic orbital electron populations 1.22793 0.80485 1.03173 1.00166 1.87987 1.20018 1.27006 1.95449 1.21229 0.88514 0.85530 1.01656 1.20575 0.95939 1.04869 0.94219 1.22915 0.89942 0.91084 0.97588 1.67777 1.07823 1.12875 1.30864 1.23096 1.00487 0.91307 0.86794 1.21081 0.95145 1.07724 0.95110 1.17970 0.82304 0.76689 0.88193 1.90785 1.71027 1.49837 1.29493 1.46094 1.05943 1.73991 1.10568 1.21096 0.91877 0.96877 0.85662 0.89198 1.21884 0.99939 0.96162 0.98275 1.21486 0.97033 1.00317 0.96485 1.22296 0.95477 0.98199 1.01768 1.20098 0.87801 0.91533 0.93277 0.93325 1.42402 1.21055 1.63150 1.09837 1.19292 1.01632 1.25792 0.90071 0.91075 1.24737 0.98230 1.01524 0.96534 1.69664 1.21128 1.48526 1.18853 0.86135 0.79675 0.79134 0.81375 1.20538 1.21914 1.21907 1.22107 0.93977 1.00406 1.00433 1.21642 0.92486 0.89181 0.98941 0.89312 0.93838 0.93788 0.91693 0.91788 0.82145 0.82040 0.76629 0.92161 0.91959 0.92463 0.92137 0.92625 0.91852 0.78326 0.93593 0.91585 0.91182 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.20 10.69 -35.23 -0.38 -3.58 16 3 C 0.11 0.69 6.08 36.01 0.22 0.91 16 4 C -0.15 -1.30 5.52 -104.53 -0.58 -1.87 16 5 C 0.14 1.19 10.85 -17.47 -0.19 1.00 16 6 N -0.49 -4.90 10.35 -12.91 -0.13 -5.03 16 7 C 0.14 1.35 10.71 -17.14 -0.18 1.17 16 8 C -0.19 -1.99 5.89 -104.82 -0.62 -2.61 16 9 C 0.56 7.22 7.75 -12.33 -0.10 7.12 16 10 O -0.53 -8.61 16.08 5.32 0.09 -8.52 16 11 N -0.72 -8.27 5.03 -54.75 -0.28 -8.54 16 12 C 0.15 2.03 2.45 -67.93 -0.17 1.86 16 13 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 14 C -0.12 -1.63 5.49 -26.74 -0.15 -1.78 16 15 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 16 C -0.14 -2.37 5.50 -26.73 -0.15 -2.51 16 17 C 0.18 3.50 2.77 -67.92 -0.19 3.32 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 N -0.72 -17.66 5.12 -53.42 -0.27 -17.93 16 20 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 C -0.13 -2.01 4.86 -26.73 -0.13 -2.14 16 29 C 0.00 0.04 9.39 -38.87 -0.37 -0.33 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 35 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.16 1.16 6.42 -52.48 -0.34 0.82 16 37 H 0.40 3.59 6.67 -40.82 -0.27 3.32 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.38 9.89 7.80 -40.82 -0.32 9.58 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.15 1.46 7.74 -52.49 -0.41 1.05 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -33.62 395.07 -8.80 -42.42 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.61 Total: 8.62 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.88 Total: -3.51 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.04 Total: -58.71 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.29 Total: -12.10 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.62 -8.80 -42.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981145053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.398 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds