Wall clock time and date at job start Tue Mar 31 2020 17:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00190 * 2 1 4 4 C 1.50704 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.38358 * 120.34633 * 270.24284 * 4 3 2 6 6 N 1.31929 * 121.07394 * 180.26864 * 5 4 3 7 7 C 1.31694 * 121.88054 * 359.73889 * 6 5 4 8 8 C 1.39513 * 120.57045 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.56378 * 180.02562 * 8 7 6 10 10 O 1.21551 * 120.00333 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99571 * 359.97438 * 9 8 7 12 12 C 1.46505 * 119.99834 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46688 * 324.99372 * 12 11 9 14 14 C 1.52993 * 109.47285 * 84.99806 * 12 11 9 15 15 C 1.52996 * 109.47409 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47163 * 299.99822 * 15 14 12 17 17 C 1.53007 * 109.46743 * 59.99423 * 16 15 14 18 18 H 1.09005 * 109.46920 * 60.00701 * 17 16 15 19 19 N 1.46507 * 109.46948 * 179.97438 * 17 16 15 20 20 C 1.36932 * 120.00302 * 275.00521 * 19 17 16 21 21 H 1.08004 * 119.99768 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00005 * 180.02562 * 20 19 17 23 23 N 1.31613 * 120.00057 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99943 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47088 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47071 * 119.99888 * 24 22 20 27 27 H 1.48499 * 109.47077 * 239.99720 * 24 22 20 28 28 C 1.52996 * 109.47389 * 300.00175 * 17 16 15 29 29 C 1.38354 * 120.34699 * 89.99720 * 4 3 2 30 30 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47242 * 300.00552 * 1 2 3 32 32 H 1.09009 * 109.46761 * 60.00052 * 1 2 3 33 33 H 1.08997 * 109.47260 * 59.99663 * 3 2 1 34 34 H 1.09000 * 109.47178 * 299.99383 * 3 2 1 35 35 H 1.07992 * 119.45975 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.71650 * 179.97438 * 7 6 5 37 37 H 0.97002 * 120.00147 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47246 * 299.99996 * 14 12 11 39 39 H 1.09005 * 109.47203 * 59.99637 * 14 12 11 40 40 H 1.09000 * 109.47814 * 180.02562 * 15 14 12 41 41 H 1.09005 * 109.47304 * 59.99613 * 15 14 12 42 42 H 1.09000 * 109.47160 * 300.00401 * 16 15 14 43 43 H 1.08990 * 109.47410 * 179.97438 * 16 15 14 44 44 H 0.96997 * 119.99314 * 95.00042 * 19 17 16 45 45 H 0.96998 * 120.00254 * 179.97438 * 23 22 20 46 46 H 1.08991 * 109.47521 * 299.99983 * 28 17 16 47 47 H 1.09005 * 109.46606 * 179.97438 * 28 17 16 48 48 H 1.08002 * 120.85984 * 0.02562 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2085 1.1262 1.1949 6 7 5.5240 1.0272 1.2123 7 6 6.2323 0.9760 0.1032 8 6 5.6053 1.0261 -1.1421 9 6 6.4006 0.9680 -2.3870 10 8 5.8438 1.0120 -3.4666 11 7 7.7431 0.8663 -2.3248 12 6 8.5313 0.8093 -3.5585 13 1 7.9755 0.2618 -4.3197 14 6 8.8085 2.2305 -4.0527 15 6 9.6311 2.1710 -5.3413 16 6 10.9571 1.4586 -5.0675 17 6 10.6799 0.0373 -4.5732 18 1 10.1238 -0.5101 -5.3343 19 7 11.9497 -0.6451 -4.3115 20 6 12.6140 -1.2705 -5.3326 21 1 12.2016 -1.2611 -6.3308 22 6 13.8168 -1.9175 -5.0845 23 7 14.3190 -1.9294 -3.8680 24 14 14.7226 -2.7713 -6.4774 25 1 13.9541 -2.6130 -7.7381 26 1 16.0680 -2.1637 -6.6387 27 1 14.8662 -4.2155 -6.1626 28 6 9.8573 0.0969 -3.2845 29 6 4.2099 1.1308 -1.1930 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6886 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.6664 1.1658 2.1281 36 1 7.3079 0.8953 0.1582 37 1 8.1875 0.8316 -1.4633 38 1 7.8638 2.7379 -4.2482 39 1 9.3642 2.7780 -3.2914 40 1 9.8290 3.1834 -5.6933 41 1 9.0750 1.6236 -6.1025 42 1 11.5132 2.0059 -4.3064 43 1 11.5430 1.4158 -5.9856 44 1 12.3198 -0.6537 -3.4150 45 1 15.1592 -2.3818 -3.6946 46 1 10.4134 0.6442 -2.5235 47 1 9.6595 -0.9156 -2.9327 48 1 3.6917 1.1721 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981145053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:08 Heat of formation + Delta-G solvation = -69.977955 kcal Electronic energy + Delta-G solvation = -27789.778964 eV Core-core repulsion = 23843.435331 eV Total energy + Delta-G solvation = -3946.343633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.85799 -40.63690 -39.21896 -38.67343 -36.29691 -34.99456 -34.06291 -33.26720 -32.82900 -30.61392 -29.39722 -28.40657 -26.50813 -25.85936 -25.55069 -23.79155 -23.27078 -22.59998 -21.47098 -20.81679 -19.33032 -18.75125 -18.14637 -17.69646 -17.38859 -17.15071 -16.58188 -16.35353 -16.23108 -16.09292 -15.86527 -15.40454 -15.14706 -15.08935 -14.87963 -14.58548 -14.23083 -14.21254 -13.96980 -13.58034 -13.41414 -13.34221 -12.92311 -12.90612 -12.84417 -12.37332 -12.25590 -12.13637 -12.02161 -11.97407 -11.66206 -11.62956 -11.39849 -11.14185 -11.00270 -10.87902 -10.72643 -10.49916 -10.32429 -10.06183 -8.99082 -7.93646 -5.21156 -0.48407 0.00859 1.47435 1.47770 1.57585 1.71473 1.96433 2.56738 2.58757 3.04984 3.24201 3.39891 3.58826 3.62795 3.70606 3.73784 3.83188 3.86650 4.00241 4.04728 4.22853 4.31327 4.32312 4.43142 4.49183 4.52869 4.54134 4.56797 4.58422 4.62904 4.67019 4.77139 4.89114 4.90437 5.00862 5.05789 5.11730 5.17423 5.22822 5.35693 5.39690 5.44667 5.51319 5.54201 5.66412 6.17068 6.29307 6.42380 6.72933 7.07854 7.35725 8.11648 8.35252 9.29855 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.001977 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.781565 B =14159.216149 C =14449.723600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.106 3.894 4 C -0.152 4.152 5 C 0.144 3.856 6 N -0.503 5.503 7 C 0.143 3.857 8 C -0.199 4.199 9 C 0.565 3.435 10 O -0.572 6.572 11 N -0.705 5.705 12 C 0.159 3.841 13 H 0.071 0.929 14 C -0.116 4.116 15 C -0.106 4.106 16 C -0.127 4.127 17 C 0.177 3.823 18 H 0.036 0.964 19 N -0.735 5.735 20 C -0.235 4.235 21 H 0.073 0.927 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.968 3.032 25 H -0.268 1.268 26 H -0.294 1.294 27 H -0.295 1.295 28 C -0.116 4.116 29 C -0.006 4.006 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.190 0.810 36 H 0.182 0.818 37 H 0.413 0.587 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.041 0.959 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.371 11.268 11.322 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.013 4.013 6 N -0.211 5.211 7 C -0.015 4.015 8 C -0.204 4.204 9 C 0.352 3.648 10 O -0.453 6.453 11 N -0.356 5.356 12 C 0.054 3.946 13 H 0.089 0.911 14 C -0.155 4.155 15 C -0.145 4.145 16 C -0.167 4.167 17 C 0.068 3.932 18 H 0.054 0.946 19 N -0.375 5.375 20 C -0.367 4.367 21 H 0.090 0.910 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.797 3.203 25 H -0.193 1.193 26 H -0.221 1.221 27 H -0.222 1.222 28 C -0.155 4.155 29 C -0.033 4.033 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.207 0.793 36 H 0.199 0.801 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -27.170 11.017 11.179 31.377 hybrid contribution 0.705 -0.544 -1.008 1.345 sum -26.465 10.473 10.171 30.225 Atomic orbital electron populations 1.22951 0.78968 1.03815 1.01344 1.87932 1.21788 1.28090 1.95719 1.21355 0.87033 0.85259 1.03379 1.20794 0.97200 1.03910 0.93521 1.23426 0.89624 0.89482 0.98738 1.67852 1.08725 1.13635 1.30897 1.23360 1.01442 0.90486 0.86186 1.20924 0.95295 1.09714 0.94496 1.18252 0.82392 0.75698 0.88415 1.90763 1.71716 1.51761 1.31017 1.45899 1.05652 1.73487 1.10566 1.20814 0.90717 0.96929 0.86130 0.91057 1.21816 0.99987 0.95644 0.98036 1.21414 0.95111 1.00863 0.97103 1.22100 0.97017 0.97065 1.00503 1.20314 0.86068 0.91898 0.94944 0.94597 1.42573 1.22542 1.63601 1.08772 1.19622 1.01576 1.24778 0.90772 0.90952 1.25487 0.99439 1.03114 0.98731 1.69802 1.21457 1.49993 1.20634 0.85149 0.78278 0.77609 0.79218 1.19268 1.22097 1.22195 1.21893 0.94432 1.00545 0.98643 1.21762 0.92482 0.89464 0.99578 0.89053 0.92160 0.93081 0.89051 0.90993 0.79346 0.80143 0.74945 0.91907 0.90542 0.90516 0.92340 0.92682 0.94005 0.79402 0.94107 0.90332 0.91976 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -6.25 10.69 -148.98 -1.59 -7.85 16 3 C 0.11 1.14 6.08 71.24 0.43 1.58 16 4 C -0.15 -2.32 5.52 -19.81 -0.11 -2.43 16 5 C 0.14 2.10 10.85 84.71 0.92 3.02 16 6 N -0.50 -9.20 10.35 -194.76 -2.01 -11.21 16 7 C 0.14 2.52 10.71 85.02 0.91 3.43 16 8 C -0.20 -4.11 5.89 -19.99 -0.12 -4.23 16 9 C 0.57 14.18 7.75 86.79 0.67 14.86 16 10 O -0.57 -18.53 16.08 -3.87 -0.06 -18.59 16 11 N -0.71 -15.46 5.03 -445.41 -2.24 -17.70 16 12 C 0.16 4.19 2.45 44.99 0.11 4.30 16 13 H 0.07 2.20 7.58 -2.39 -0.02 2.18 16 14 C -0.12 -2.85 5.49 30.59 0.17 -2.68 16 15 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 16 C -0.13 -4.31 5.50 30.60 0.17 -4.14 16 17 C 0.18 6.76 2.77 44.99 0.12 6.88 16 18 H 0.04 1.46 8.08 -2.38 -0.02 1.44 16 19 N -0.74 -36.29 5.12 -322.92 -1.65 -37.94 16 20 C -0.24 -13.02 9.93 84.03 0.83 -12.18 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 23 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 24 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 28 C -0.12 -3.51 4.86 30.59 0.15 -3.36 16 29 C -0.01 -0.12 9.39 22.73 0.21 0.09 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 34 H 0.07 0.64 8.09 -2.39 -0.02 0.63 16 35 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.18 2.24 6.42 -2.91 -0.02 2.22 16 37 H 0.41 6.70 6.67 -92.71 -0.62 6.08 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.37 19.61 7.80 -92.71 -0.72 18.89 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.14 2.84 7.74 -2.91 -0.02 2.82 16 Total: -1.00 -72.88 395.07 0.75 -72.13 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.37 Total: 31.22 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.37 Total: 0.08 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -5.63 Total: -125.39 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.65 Total: -26.44 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -72.88 0.75 -72.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981145053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.151 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds