Wall clock time and date at job start Tue Mar 31 2020 17:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35741 * 116.99431 * 2 1 4 4 C 1.39282 * 120.85086 * 359.97438 * 3 2 1 5 5 C 1.37949 * 119.09594 * 180.02562 * 4 3 2 6 6 N 1.31973 * 120.82142 * 359.97438 * 5 4 3 7 7 C 1.31947 * 121.86690 * 359.73082 * 6 5 4 8 8 C 1.37996 * 120.81551 * 0.53718 * 7 6 5 9 9 C 1.50706 * 120.45226 * 179.75208 * 8 7 6 10 10 C 1.50702 * 109.46855 * 264.72216 * 9 8 7 11 11 O 1.21279 * 120.00201 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99824 * 13 12 10 15 15 C 1.53000 * 109.47023 * 274.99565 * 13 12 10 16 16 C 1.53002 * 109.47233 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46817 * 60.00194 * 16 15 13 18 18 C 1.53005 * 109.47452 * 300.00239 * 17 16 15 19 19 H 1.09002 * 109.46935 * 300.00125 * 18 17 16 20 20 N 1.46496 * 109.47414 * 180.02562 * 18 17 16 21 21 C 1.36936 * 119.99988 * 84.99756 * 20 18 17 22 22 H 1.08001 * 120.00514 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99902 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99925 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47024 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47068 * 119.99725 * 25 23 21 28 28 H 1.48501 * 109.46760 * 239.99716 * 25 23 21 29 29 C 1.52997 * 109.47007 * 154.99772 * 13 12 10 30 30 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47517 * 299.99288 * 1 2 3 32 32 H 1.08995 * 109.47728 * 60.00239 * 1 2 3 33 33 H 1.08007 * 120.45488 * 0.04021 * 4 3 2 34 34 H 1.08001 * 119.58887 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.59146 * 180.28670 * 7 6 5 36 36 H 1.09002 * 109.47143 * 144.71998 * 9 8 7 37 37 H 1.09002 * 109.47176 * 24.71685 * 9 8 7 38 38 H 0.97004 * 119.99983 * 359.97438 * 12 10 9 39 39 H 1.08992 * 109.47399 * 300.00063 * 15 13 12 40 40 H 1.09004 * 109.46724 * 60.00549 * 15 13 12 41 41 H 1.09002 * 109.47075 * 300.00932 * 16 15 13 42 42 H 1.08993 * 109.47662 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.47289 * 180.02562 * 17 16 15 44 44 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 45 45 H 0.96994 * 120.00122 * 265.00254 * 20 18 17 46 46 H 0.97001 * 119.99978 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.47853 * 300.00060 * 29 13 12 48 48 H 1.09002 * 109.47153 * 60.00089 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2095 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9674 3.5981 -0.0011 6 7 3.2862 3.6459 -0.0005 7 6 4.0229 2.5512 0.0057 8 6 3.4344 1.3030 0.0010 9 6 4.2838 0.0581 0.0026 10 6 4.4652 -0.4280 -1.4123 11 8 3.9547 0.1766 -2.3314 12 7 5.1939 -1.5352 -1.6561 13 6 5.3698 -2.0082 -3.0315 14 1 5.4314 -1.1531 -3.7047 15 6 4.1785 -2.8833 -3.4262 16 6 4.3618 -3.3767 -4.8628 17 6 5.6505 -4.1956 -4.9601 18 6 6.8420 -3.3205 -4.5654 19 1 6.9033 -2.4652 -5.2383 20 7 8.0760 -4.1044 -4.6592 21 6 8.7252 -4.2183 -5.8595 22 1 8.3274 -3.7306 -6.7371 23 6 9.8943 -4.9616 -5.9485 24 7 10.3789 -5.5564 -4.8790 25 14 10.7804 -5.1164 -7.5857 26 1 10.0368 -4.3593 -8.6244 27 1 12.1538 -4.5658 -7.4592 28 1 10.8546 -6.5475 -7.9749 29 6 6.6585 -2.8272 -3.1283 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2243 2.3567 -0.0003 34 1 1.4005 4.5174 -0.0011 35 1 5.0998 2.6331 0.0106 36 1 3.7929 -0.7159 0.5926 37 1 5.2578 0.2833 0.4370 38 1 5.6019 -2.0190 -0.9209 39 1 4.1169 -3.7383 -2.7531 40 1 3.2604 -2.2997 -3.3573 41 1 4.4232 -2.5214 -5.5357 42 1 3.5130 -3.9998 -5.1442 43 1 5.7815 -4.5468 -5.9837 44 1 5.5892 -5.0509 -4.2872 45 1 8.4331 -4.5429 -3.8712 46 1 11.1960 -6.0755 -4.9411 47 1 7.5073 -2.2039 -2.8471 48 1 6.5969 -3.6823 -2.4551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981166211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:28 Heat of formation + Delta-G solvation = -42.989366 kcal Electronic energy + Delta-G solvation = -28420.398162 eV Core-core repulsion = 24475.224842 eV Total energy + Delta-G solvation = -3945.173320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10940 -39.77371 -38.50191 -37.89695 -34.65375 -33.62769 -33.24533 -31.50799 -31.11951 -29.74245 -28.26234 -27.87020 -27.35453 -23.77192 -23.21715 -23.12347 -21.92962 -21.20820 -20.26826 -19.37539 -18.66547 -17.47755 -17.34388 -16.82248 -16.36319 -16.10940 -15.44140 -15.31532 -14.96184 -14.68442 -14.51122 -14.37579 -13.97628 -13.83163 -13.70186 -13.54436 -13.33315 -13.13007 -12.73151 -12.64625 -12.28597 -12.11146 -11.97379 -11.90848 -11.52631 -10.98999 -10.91761 -10.88194 -10.71038 -10.32834 -10.25678 -10.16249 -10.03964 -9.80844 -9.70051 -9.60297 -9.39004 -8.99095 -8.93633 -8.84938 -6.95666 -5.76788 -3.05171 0.79311 1.08343 2.68015 2.76483 3.16675 3.43560 3.49711 3.51562 3.61549 4.12640 4.31724 4.46271 4.55247 4.58607 4.70737 4.75121 4.80879 4.93641 5.01191 5.04315 5.09297 5.14086 5.28644 5.35083 5.43111 5.51749 5.61978 5.63364 5.70846 5.75251 5.77562 5.89659 5.99215 6.05028 6.15888 6.25406 6.32694 6.36740 6.53562 6.56551 6.66431 6.74469 6.82983 6.97903 7.13392 7.56273 7.71853 7.75115 8.28121 8.42075 9.53327 10.10725 10.45533 11.46038 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.002169 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.479461 B =12903.593781 C =13469.323986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.183 3.817 4 C -0.263 4.263 5 C 0.133 3.867 6 N -0.507 5.507 7 C 0.145 3.855 8 C -0.147 4.147 9 C -0.091 4.091 10 C 0.517 3.483 11 O -0.536 6.536 12 N -0.724 5.724 13 C 0.149 3.851 14 H 0.086 0.914 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.235 4.235 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.129 4.129 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.399 0.601 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.068 0.932 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.764 12.616 15.216 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.129 3.871 4 C -0.284 4.284 5 C -0.024 4.024 6 N -0.219 5.219 7 C -0.011 4.011 8 C -0.150 4.150 9 C -0.132 4.132 10 C 0.302 3.698 11 O -0.412 6.412 12 N -0.375 5.375 13 C 0.045 3.955 14 H 0.104 0.896 15 C -0.161 4.161 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.365 5.365 21 C -0.366 4.366 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.168 4.168 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.233 0.767 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.577 13.651 14.354 28.562 hybrid contribution 0.070 -1.374 -0.301 1.409 sum -20.507 12.277 14.054 27.726 Atomic orbital electron populations 1.23139 0.77743 1.04454 1.01563 1.86068 1.21878 1.26228 1.87467 1.19097 0.91827 0.84687 0.91477 1.22172 1.01442 0.93196 1.11546 1.22536 0.90346 0.96916 0.92570 1.67729 1.07088 1.31910 1.15160 1.22540 1.00269 0.86119 0.92171 1.19723 0.90811 0.96431 1.08079 1.20427 1.01062 0.96039 0.95660 1.20414 0.78245 0.80298 0.90805 1.90709 1.47758 1.56607 1.46135 1.46149 1.53415 1.28060 1.09889 1.21005 0.95125 0.97170 0.82193 0.89593 1.21863 0.97794 0.98972 0.97477 1.21486 0.98444 0.99839 0.95572 1.22286 0.94384 0.98957 1.02047 1.20108 0.86955 0.93263 0.92394 0.93403 1.42408 1.24384 1.59733 1.09953 1.19293 1.03709 1.25582 0.88064 0.91110 1.24740 0.98481 1.00642 0.97230 1.69670 1.23209 1.37971 1.27395 0.86134 0.79588 0.77295 0.83308 1.20543 1.21893 1.21925 1.22092 0.95534 0.99282 0.99851 0.87820 0.92406 0.92271 0.84437 0.82603 0.82196 0.87609 0.87602 0.76724 0.92131 0.92322 0.92251 0.92602 0.91937 0.92676 0.78347 0.93613 0.91322 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.02 9.77 -18.93 -0.18 -3.21 16 3 C 0.18 1.93 6.70 -38.82 -0.26 1.67 16 4 C -0.26 -2.33 9.11 -39.30 -0.36 -2.69 16 5 C 0.13 1.24 11.17 -17.60 -0.20 1.04 16 6 N -0.51 -5.78 10.36 -13.33 -0.14 -5.92 16 7 C 0.14 1.54 10.83 -17.59 -0.19 1.35 16 8 C -0.15 -1.57 4.40 -104.33 -0.46 -2.03 16 9 C -0.09 -0.82 5.61 -29.03 -0.16 -0.99 16 10 C 0.52 6.50 7.79 -10.98 -0.09 6.42 16 11 O -0.54 -9.02 15.70 5.56 0.09 -8.93 16 12 N -0.72 -8.37 5.08 -53.81 -0.27 -8.64 16 13 C 0.15 2.11 2.45 -67.93 -0.17 1.94 16 14 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 15 C -0.12 -1.69 5.49 -26.73 -0.15 -1.83 16 16 C -0.11 -1.68 5.92 -26.73 -0.16 -1.84 16 17 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 18 C 0.18 3.57 2.77 -67.90 -0.19 3.38 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.83 5.12 -53.40 -0.27 -18.11 16 21 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 25 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C -0.13 -2.02 4.86 -26.71 -0.13 -2.15 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.24 7.71 -51.93 -0.40 -0.16 16 32 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 33 H 0.14 0.83 6.47 -52.48 -0.34 0.49 16 34 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.11 0.81 7.77 -51.93 -0.40 0.41 16 37 H 0.11 0.66 8.06 -51.93 -0.42 0.24 16 38 H 0.40 3.52 8.60 -40.82 -0.35 3.17 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -34.94 393.16 -8.70 -43.64 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.64 Total: 9.44 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.90 Total: -4.31 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.04 Total: -59.95 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.10 Total: -12.14 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.94 -8.70 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.655 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds