Wall clock time and date at job start Tue Mar 31 2020 17:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35741 * 116.99431 * 2 1 4 4 C 1.39282 * 120.85086 * 359.97438 * 3 2 1 5 5 C 1.37949 * 119.09594 * 180.02562 * 4 3 2 6 6 N 1.31973 * 120.82142 * 359.97438 * 5 4 3 7 7 C 1.31947 * 121.86690 * 359.73082 * 6 5 4 8 8 C 1.37996 * 120.81551 * 0.53718 * 7 6 5 9 9 C 1.50706 * 120.45226 * 179.75208 * 8 7 6 10 10 C 1.50702 * 109.46855 * 264.72216 * 9 8 7 11 11 O 1.21279 * 120.00201 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99824 * 13 12 10 15 15 C 1.53000 * 109.47023 * 274.99565 * 13 12 10 16 16 C 1.53002 * 109.47233 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46817 * 60.00194 * 16 15 13 18 18 C 1.53005 * 109.47452 * 300.00239 * 17 16 15 19 19 H 1.09002 * 109.46935 * 300.00125 * 18 17 16 20 20 N 1.46496 * 109.47414 * 180.02562 * 18 17 16 21 21 C 1.36936 * 119.99988 * 84.99756 * 20 18 17 22 22 H 1.08001 * 120.00514 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99902 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99925 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47024 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47068 * 119.99725 * 25 23 21 28 28 H 1.48501 * 109.46760 * 239.99716 * 25 23 21 29 29 C 1.52997 * 109.47007 * 154.99772 * 13 12 10 30 30 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47517 * 299.99288 * 1 2 3 32 32 H 1.08995 * 109.47728 * 60.00239 * 1 2 3 33 33 H 1.08007 * 120.45488 * 0.04021 * 4 3 2 34 34 H 1.08001 * 119.58887 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.59146 * 180.28670 * 7 6 5 36 36 H 1.09002 * 109.47143 * 144.71998 * 9 8 7 37 37 H 1.09002 * 109.47176 * 24.71685 * 9 8 7 38 38 H 0.97004 * 119.99983 * 359.97438 * 12 10 9 39 39 H 1.08992 * 109.47399 * 300.00063 * 15 13 12 40 40 H 1.09004 * 109.46724 * 60.00549 * 15 13 12 41 41 H 1.09002 * 109.47075 * 300.00932 * 16 15 13 42 42 H 1.08993 * 109.47662 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.47289 * 180.02562 * 17 16 15 44 44 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 45 45 H 0.96994 * 120.00122 * 265.00254 * 20 18 17 46 46 H 0.97001 * 119.99978 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.47853 * 300.00060 * 29 13 12 48 48 H 1.09002 * 109.47153 * 60.00089 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2095 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9674 3.5981 -0.0011 6 7 3.2862 3.6459 -0.0005 7 6 4.0229 2.5512 0.0057 8 6 3.4344 1.3030 0.0010 9 6 4.2838 0.0581 0.0026 10 6 4.4652 -0.4280 -1.4123 11 8 3.9547 0.1766 -2.3314 12 7 5.1939 -1.5352 -1.6561 13 6 5.3698 -2.0082 -3.0315 14 1 5.4314 -1.1531 -3.7047 15 6 4.1785 -2.8833 -3.4262 16 6 4.3618 -3.3767 -4.8628 17 6 5.6505 -4.1956 -4.9601 18 6 6.8420 -3.3205 -4.5654 19 1 6.9033 -2.4652 -5.2383 20 7 8.0760 -4.1044 -4.6592 21 6 8.7252 -4.2183 -5.8595 22 1 8.3274 -3.7306 -6.7371 23 6 9.8943 -4.9616 -5.9485 24 7 10.3789 -5.5564 -4.8790 25 14 10.7804 -5.1164 -7.5857 26 1 10.0368 -4.3593 -8.6244 27 1 12.1538 -4.5658 -7.4592 28 1 10.8546 -6.5475 -7.9749 29 6 6.6585 -2.8272 -3.1283 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2243 2.3567 -0.0003 34 1 1.4005 4.5174 -0.0011 35 1 5.0998 2.6331 0.0106 36 1 3.7929 -0.7159 0.5926 37 1 5.2578 0.2833 0.4370 38 1 5.6019 -2.0190 -0.9209 39 1 4.1169 -3.7383 -2.7531 40 1 3.2604 -2.2997 -3.3573 41 1 4.4232 -2.5214 -5.5357 42 1 3.5130 -3.9998 -5.1442 43 1 5.7815 -4.5468 -5.9837 44 1 5.5892 -5.0509 -4.2872 45 1 8.4331 -4.5429 -3.8712 46 1 11.1960 -6.0755 -4.9411 47 1 7.5073 -2.2039 -2.8471 48 1 6.5969 -3.6823 -2.4551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981166211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:27 Heat of formation + Delta-G solvation = -67.246870 kcal Electronic energy + Delta-G solvation = -28421.450046 eV Core-core repulsion = 24475.224842 eV Total energy + Delta-G solvation = -3946.225204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82906 -40.82919 -39.26845 -39.09454 -36.22476 -34.79638 -34.31764 -32.92754 -32.18582 -30.92291 -29.60542 -28.68600 -28.21002 -25.71005 -24.04804 -23.88536 -23.17935 -22.46033 -21.36143 -20.75555 -19.34345 -19.14236 -18.16308 -17.97493 -17.52162 -16.73896 -16.57073 -16.18635 -16.04563 -15.82189 -15.70026 -15.38867 -15.18409 -15.04435 -15.01633 -14.76167 -14.46288 -14.14642 -14.11608 -13.64695 -13.40561 -13.20711 -12.91964 -12.87133 -12.78939 -12.47819 -12.25294 -12.13653 -12.12379 -12.02513 -11.97297 -11.64509 -11.48300 -11.37783 -10.89677 -10.84615 -10.51069 -10.09675 -9.99738 -9.71514 -8.99557 -7.94029 -5.21590 0.09404 0.36468 1.47179 1.47491 1.57369 1.72058 2.18776 2.22020 2.56718 2.87017 3.39326 3.48481 3.64510 3.67129 3.83632 3.87634 3.90256 4.00435 4.07805 4.22001 4.29397 4.31668 4.34303 4.35264 4.44242 4.46775 4.54295 4.58103 4.65894 4.68196 4.69443 4.76607 4.78982 4.96385 5.03005 5.08901 5.14001 5.17655 5.21942 5.35366 5.50292 5.51443 5.55615 5.59283 5.66642 6.21015 6.29122 6.64523 7.04276 7.34171 7.35384 8.11013 8.35034 9.29478 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.002169 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.479461 B =12903.593781 C =13469.323986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.168 3.832 4 C -0.263 4.263 5 C 0.123 3.877 6 N -0.535 5.535 7 C 0.131 3.869 8 C -0.165 4.165 9 C -0.082 4.082 10 C 0.516 3.484 11 O -0.582 6.582 12 N -0.714 5.714 13 C 0.160 3.840 14 H 0.063 0.937 15 C -0.113 4.113 16 C -0.107 4.107 17 C -0.126 4.126 18 C 0.177 3.823 19 H 0.033 0.967 20 N -0.735 5.735 21 C -0.235 4.235 22 H 0.071 0.929 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.968 3.032 26 H -0.269 1.269 27 H -0.293 1.293 28 H -0.293 1.293 29 C -0.114 4.114 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.173 0.827 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.415 0.585 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.061 0.939 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.378 12.850 16.141 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.114 3.886 4 C -0.283 4.283 5 C -0.033 4.033 6 N -0.247 5.247 7 C -0.025 4.025 8 C -0.168 4.168 9 C -0.122 4.122 10 C 0.304 3.696 11 O -0.461 6.461 12 N -0.365 5.365 13 C 0.054 3.946 14 H 0.081 0.919 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.166 4.166 18 C 0.068 3.932 19 H 0.051 0.949 20 N -0.375 5.375 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.797 3.203 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.221 1.221 29 C -0.152 4.152 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.181 0.819 34 H 0.200 0.800 35 H 0.190 0.810 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.252 0.748 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.080 0.920 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.229 13.894 15.300 30.352 hybrid contribution 0.463 -1.401 -0.583 1.586 sum -21.766 12.494 14.717 29.094 Atomic orbital electron populations 1.23410 0.75957 1.05846 1.02522 1.86036 1.23824 1.26108 1.87408 1.19377 0.92233 0.85460 0.91575 1.22470 1.02794 0.92537 1.10537 1.23039 0.90031 0.98308 0.91886 1.67737 1.08235 1.32521 1.16207 1.22828 1.01068 0.86251 0.92337 1.19941 0.91436 0.96892 1.08540 1.20449 1.02669 0.95849 0.93243 1.21024 0.77128 0.79610 0.91830 1.90691 1.49644 1.57925 1.47851 1.45978 1.53242 1.28064 1.09250 1.20687 0.94393 0.96086 0.83414 0.91887 1.21777 0.97263 0.99200 0.96963 1.21413 0.97298 0.99453 0.96378 1.22091 0.95053 0.98889 1.00572 1.20315 0.85757 0.92472 0.94667 0.94866 1.42573 1.25900 1.60282 1.08737 1.19602 1.03601 1.24424 0.89075 0.91107 1.25492 0.99648 1.01240 1.00388 1.69805 1.23629 1.39214 1.29223 0.85149 0.78193 0.76999 0.79913 1.19363 1.22074 1.22052 1.21873 0.96258 0.99720 0.97383 0.86328 0.90576 0.92128 0.81853 0.80022 0.80959 0.85905 0.84647 0.74802 0.90683 0.92481 0.92697 0.90667 0.94096 0.92651 0.79371 0.94069 0.91976 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 113.37 1.12 1.28 16 2 O -0.32 -5.85 9.77 -90.66 -0.89 -6.74 16 3 C 0.17 3.32 6.70 22.76 0.15 3.47 16 4 C -0.26 -4.26 9.11 22.45 0.20 -4.05 16 5 C 0.12 2.15 11.17 84.60 0.95 3.10 16 6 N -0.53 -11.88 10.36 -196.08 -2.03 -13.91 16 7 C 0.13 2.71 10.83 84.62 0.92 3.62 16 8 C -0.16 -3.34 4.40 -19.68 -0.09 -3.42 16 9 C -0.08 -1.32 5.61 29.10 0.16 -1.16 16 10 C 0.52 12.28 7.79 87.66 0.68 12.96 16 11 O -0.58 -19.37 15.70 -3.03 -0.05 -19.41 16 12 N -0.71 -15.20 5.08 -442.53 -2.25 -17.45 16 13 C 0.16 4.33 2.45 44.99 0.11 4.44 16 14 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 15 C -0.11 -2.91 5.49 30.60 0.17 -2.75 16 16 C -0.11 -2.98 5.92 30.59 0.18 -2.80 16 17 C -0.13 -4.39 5.50 30.60 0.17 -4.22 16 18 C 0.18 6.88 2.77 45.01 0.12 7.01 16 19 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 20 N -0.74 -36.56 5.12 -322.85 -1.65 -38.22 16 21 C -0.24 -13.06 9.93 84.04 0.83 -12.23 16 22 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 23 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 24 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 25 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 29 C -0.11 -3.48 4.86 30.61 0.15 -3.33 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.45 7.71 -2.39 -0.02 0.43 16 32 H 0.06 0.57 7.71 -2.39 -0.02 0.55 16 33 H 0.16 1.60 6.47 -2.91 -0.02 1.58 16 34 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.12 1.57 7.77 -2.39 -0.02 1.55 16 37 H 0.14 1.33 8.06 -2.39 -0.02 1.31 16 38 H 0.42 6.25 8.60 -92.71 -0.80 5.45 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.37 19.71 7.80 -92.71 -0.72 18.98 16 46 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 47 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -76.39 393.16 1.20 -75.20 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.55 Total: 32.51 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 6.30 Total: -1.94 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.65 Total: -128.07 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.93 Total: -26.15 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.39 1.20 -75.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.951 kcal (2) G-P(sol) polarization free energy of solvation -76.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds