Wall clock time and date at job start Tue Mar 31 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35916 * 116.99621 * 2 1 4 4 C 1.39142 * 120.47264 * 179.97438 * 3 2 1 5 5 C 1.38528 * 118.37532 * 179.97438 * 4 3 2 6 6 C 1.38262 * 119.22001 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.55310 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46820 * 124.99734 * 7 6 5 9 9 O 1.21283 * 120.00111 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99767 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00086 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46574 * 35.00169 * 11 10 8 13 13 C 1.53006 * 109.46958 * 275.00661 * 11 10 8 14 14 C 1.53001 * 109.47124 * 299.99654 * 13 11 10 15 15 C 1.53004 * 109.46823 * 300.00329 * 14 13 11 16 16 C 1.53001 * 109.47484 * 60.00243 * 15 14 13 17 17 H 1.08999 * 109.47031 * 59.99233 * 16 15 14 18 18 N 1.46491 * 109.47177 * 180.02562 * 16 15 14 19 19 C 1.36943 * 119.99591 * 274.99863 * 18 16 15 20 20 H 1.08002 * 120.00049 * 359.97438 * 19 18 16 21 21 C 1.38819 * 120.00071 * 180.02562 * 19 18 16 22 22 N 1.31626 * 119.99640 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00132 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46809 * 59.99868 * 23 21 19 25 25 H 1.48504 * 109.47110 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47167 * 299.99854 * 23 21 19 27 27 C 1.53000 * 109.47201 * 155.00431 * 11 10 8 28 28 N 1.31837 * 120.88633 * 0.25000 * 6 5 4 29 29 C 1.31846 * 121.78129 * 359.48051 * 28 6 5 30 30 H 1.08994 * 109.47232 * 60.00158 * 1 2 3 31 31 H 1.09001 * 109.46655 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47110 * 299.99973 * 1 2 3 33 33 H 1.08003 * 120.80995 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.38967 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47057 * 244.99792 * 7 6 5 36 36 H 1.09000 * 109.47142 * 5.00033 * 7 6 5 37 37 H 0.96997 * 120.00515 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47116 * 59.99596 * 13 11 10 39 39 H 1.08999 * 109.46744 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.47161 * 180.02562 * 14 13 11 41 41 H 1.08998 * 109.46906 * 59.99640 * 14 13 11 42 42 H 1.09003 * 109.46905 * 299.99830 * 15 14 13 43 43 H 1.09004 * 109.46487 * 180.02562 * 15 14 13 44 44 H 0.96995 * 120.00609 * 94.99914 * 18 16 15 45 45 H 0.96998 * 119.99516 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.46739 * 180.02562 * 27 11 10 47 47 H 1.08991 * 109.46880 * 299.99932 * 27 11 10 48 48 H 1.07999 * 119.65374 * 180.26879 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 3.4349 1.2954 0.0005 5 6 4.0181 2.5520 0.0000 6 6 3.2077 3.6722 -0.0006 7 6 3.8343 5.0429 -0.0006 8 6 3.3024 5.8382 -1.1649 9 8 2.4938 5.3412 -1.9200 10 7 3.7245 7.1022 -1.3664 11 6 3.2070 7.8756 -2.4980 12 1 2.1633 7.6130 -2.6705 13 6 4.0266 7.5579 -3.7503 14 6 5.4917 7.9265 -3.5081 15 6 5.5966 9.4205 -3.1952 16 6 4.7771 9.7382 -1.9429 17 1 5.1621 9.1627 -1.1011 18 7 4.8771 11.1688 -1.6438 19 6 5.9336 11.6432 -0.9129 20 1 6.6928 10.9626 -0.5568 21 6 6.0282 12.9987 -0.6290 22 7 5.1027 13.8280 -1.0626 23 14 7.4690 13.6457 0.3685 24 1 8.7382 13.3377 -0.3381 25 1 7.3377 15.1160 0.5313 26 1 7.4765 12.9979 1.7047 27 6 3.3120 9.3696 -2.1851 28 7 1.8944 3.5574 0.0044 29 6 1.3002 2.3805 -0.0001 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8901 33 1 4.0433 0.4031 0.0014 34 1 5.0931 2.6553 -0.0001 35 1 3.5899 5.5540 0.9306 36 1 4.9164 4.9477 -0.0897 37 1 4.3708 7.4998 -0.7624 38 1 3.9518 6.4935 -3.9731 39 1 3.6419 8.1337 -4.5920 40 1 6.0755 7.7005 -4.4004 41 1 5.8766 7.3511 -2.6661 42 1 5.2116 9.9959 -4.0371 43 1 6.6405 9.6831 -3.0231 44 1 4.1951 11.7800 -1.9633 45 1 5.1690 14.7753 -0.8645 46 1 2.9266 9.9450 -3.0268 47 1 2.7281 9.5959 -1.2930 48 1 0.2215 2.3265 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981288212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:18 Heat of formation + Delta-G solvation = -60.140766 kcal Electronic energy + Delta-G solvation = -28264.849364 eV Core-core repulsion = 24318.932304 eV Total energy + Delta-G solvation = -3945.917060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75751 -41.01485 -39.46633 -38.74044 -36.08120 -34.37993 -33.40877 -33.36724 -32.83568 -30.95208 -29.56206 -28.87034 -27.95802 -25.65410 -24.47535 -23.65523 -23.14924 -22.46437 -21.71587 -20.04148 -19.17925 -19.08469 -18.31687 -17.82849 -17.20334 -16.86378 -16.75264 -16.34931 -16.19730 -15.99877 -15.38135 -15.23148 -15.07987 -14.97795 -14.88502 -14.69471 -14.09610 -13.95906 -13.88094 -13.52382 -13.23145 -13.04232 -12.97907 -12.86133 -12.83544 -12.73537 -12.72911 -12.29909 -12.22666 -12.04777 -11.91769 -11.54978 -11.42098 -10.96538 -10.84950 -10.78844 -10.63226 -10.31721 -9.91744 -9.33505 -8.95265 -7.89313 -5.17155 0.12859 0.33011 1.50399 1.52741 1.58514 1.80766 2.23588 2.29870 2.59875 2.85333 3.34922 3.44038 3.67617 3.69109 3.75247 3.91309 3.95660 3.97603 4.12227 4.31946 4.33921 4.35148 4.36952 4.39617 4.41500 4.55900 4.59294 4.61146 4.69762 4.71136 4.75343 4.76404 4.84876 4.96999 5.03045 5.12786 5.14848 5.21918 5.26437 5.41035 5.54005 5.54643 5.56424 5.61619 5.72332 6.21940 6.32647 6.68920 7.06227 7.38677 7.40563 8.16063 8.37871 9.34094 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.002131 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.773965 B =13134.651794 C =13586.800140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.065 3.935 4 C -0.116 4.116 5 C -0.119 4.119 6 C 0.086 3.914 7 C -0.086 4.086 8 C 0.517 3.483 9 O -0.572 6.572 10 N -0.715 5.715 11 C 0.162 3.838 12 H 0.072 0.928 13 C -0.120 4.120 14 C -0.102 4.102 15 C -0.128 4.128 16 C 0.178 3.822 17 H 0.052 0.948 18 N -0.738 5.738 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.969 3.031 24 H -0.279 1.279 25 H -0.301 1.301 26 H -0.276 1.276 27 C -0.121 4.121 28 N -0.458 5.458 29 C 0.006 3.994 30 H 0.060 0.940 31 H 0.125 0.875 32 H 0.065 0.935 33 H 0.165 0.835 34 H 0.177 0.823 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.409 0.591 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.371 0.629 45 H 0.248 0.752 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 -28.495 1.972 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.018 3.982 4 C -0.142 4.142 5 C -0.138 4.138 6 C -0.053 4.053 7 C -0.126 4.126 8 C 0.304 3.696 9 O -0.450 6.450 10 N -0.368 5.368 11 C 0.056 3.944 12 H 0.090 0.910 13 C -0.158 4.158 14 C -0.140 4.140 15 C -0.168 4.168 16 C 0.070 3.930 17 H 0.070 0.930 18 N -0.377 5.377 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.799 3.201 24 H -0.206 1.206 25 H -0.228 1.228 26 H -0.202 1.202 27 C -0.159 4.159 28 N -0.168 5.168 29 C -0.152 4.152 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.182 0.818 34 H 0.194 0.806 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.247 0.753 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.202 0.798 45 H 0.057 0.943 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.771 -28.299 1.559 28.740 hybrid contribution 0.621 0.809 0.435 1.108 sum -4.151 -27.490 1.994 27.873 Atomic orbital electron populations 1.23385 0.76316 1.05968 1.02205 1.86047 1.23485 1.25678 1.88502 1.20255 0.93981 0.85804 0.98206 1.21251 0.91576 0.99797 1.01621 1.22159 1.02832 0.90753 0.98072 1.20833 0.89115 0.95677 0.99698 1.20670 1.03051 0.90676 0.98187 1.20811 0.80738 0.81788 0.86235 1.90690 1.34897 1.70668 1.48792 1.46116 1.46477 1.13681 1.30504 1.20702 0.97786 0.89540 0.86335 0.90982 1.21823 0.95882 1.01008 0.97131 1.21397 0.95868 0.95019 1.01761 1.22113 0.99968 0.95875 0.98836 1.20375 0.93300 0.84320 0.95034 0.93007 1.42658 1.27521 1.03688 1.63859 1.19594 1.01183 0.91654 1.23940 0.90250 1.25540 1.01296 0.96793 1.03586 1.69819 1.37016 1.02700 1.52743 0.85266 0.79408 0.76450 0.78979 1.20552 1.22808 1.20220 1.21955 0.97353 0.94539 1.02096 1.67245 1.12939 1.27432 1.09181 1.23066 1.01205 0.87080 1.03887 0.92174 0.85653 0.91605 0.81790 0.80563 0.85832 0.83600 0.75336 0.92183 0.90986 0.91538 0.91333 0.93782 0.93803 0.79802 0.94309 0.90986 0.92152 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 113.37 1.11 1.26 16 2 O -0.32 -5.52 10.51 -92.60 -0.97 -6.50 16 3 C 0.07 1.27 6.71 22.60 0.15 1.42 16 4 C -0.12 -1.92 10.13 22.56 0.23 -1.69 16 5 C -0.12 -1.88 9.70 22.34 0.22 -1.66 16 6 C 0.09 1.85 5.76 42.57 0.25 2.09 16 7 C -0.09 -1.50 6.10 29.10 0.18 -1.32 16 8 C 0.52 13.11 7.73 87.66 0.68 13.78 16 9 O -0.57 -19.44 15.00 -3.04 -0.05 -19.48 16 10 N -0.71 -16.98 4.23 -442.51 -1.87 -18.85 16 11 C 0.16 4.37 2.78 44.99 0.13 4.49 16 12 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 13 C -0.12 -3.03 5.60 30.60 0.17 -2.86 16 14 C -0.10 -2.56 5.77 30.60 0.18 -2.39 16 15 C -0.13 -4.18 5.50 30.60 0.17 -4.01 16 16 C 0.18 6.33 2.60 44.99 0.12 6.45 16 17 H 0.05 1.76 6.44 -2.39 -0.02 1.74 16 18 N -0.74 -35.34 5.12 -322.94 -1.65 -37.00 16 19 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 20 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 22 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 23 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 C -0.12 -3.74 5.07 30.59 0.16 -3.59 16 28 N -0.46 -12.19 9.23 -183.48 -1.69 -13.89 16 29 C 0.01 0.13 10.22 84.80 0.87 1.00 16 30 H 0.06 0.57 7.68 -2.39 -0.02 0.56 16 31 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.54 7.68 -2.38 -0.02 0.52 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.18 1.41 7.95 -2.91 -0.02 1.39 16 35 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.15 1.39 7.87 -2.39 -0.02 1.37 16 37 H 0.41 8.58 6.87 -92.71 -0.64 7.94 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.57 7.60 -2.39 -0.02 1.55 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.37 19.49 7.80 -92.71 -0.72 18.76 16 45 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.16 3.00 6.32 -2.91 -0.02 2.98 16 Total: -1.00 -74.99 388.21 1.58 -73.41 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.38 Total: 36.16 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 5.89 Total: -2.48 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -4.94 Total: -128.24 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -1.02 Total: -25.98 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.99 1.58 -73.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981288212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.270 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds