Wall clock time and date at job start Tue Mar 31 2020 17:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35906 * 117.00366 * 2 1 4 4 C 1.39147 * 120.47126 * 0.21091 * 3 2 1 5 5 C 1.38535 * 118.37149 * 180.26053 * 4 3 2 6 6 C 1.38261 * 119.22168 * 359.75962 * 5 4 3 7 7 N 1.31840 * 120.88461 * 0.02562 * 6 5 4 8 8 C 1.31843 * 121.78705 * 359.97438 * 7 6 5 9 9 C 1.50690 * 119.66227 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47185 * 90.00239 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47194 * 34.71875 * 13 12 10 15 15 C 1.52997 * 109.46691 * 274.72265 * 13 12 10 16 16 C 1.53006 * 109.46908 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47416 * 59.99581 * 16 15 13 18 18 C 1.53000 * 109.47253 * 300.00429 * 17 16 15 19 19 H 1.08999 * 109.46803 * 299.99717 * 18 17 16 20 20 N 1.46500 * 109.47051 * 179.97438 * 18 17 16 21 21 C 1.36940 * 119.99629 * 85.00063 * 20 18 17 22 22 H 1.07993 * 120.00309 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99425 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99577 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00263 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46767 * 90.00431 * 25 23 21 27 27 H 1.48501 * 109.47080 * 210.00197 * 25 23 21 28 28 H 1.48501 * 109.47086 * 330.00323 * 25 23 21 29 29 C 1.52993 * 109.47100 * 154.71955 * 13 12 10 30 30 H 1.09005 * 109.46890 * 299.99882 * 1 2 3 31 31 H 1.08993 * 109.47246 * 59.99379 * 1 2 3 32 32 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.81454 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.38902 * 179.72863 * 5 4 3 35 35 H 1.07998 * 119.55597 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47343 * 330.00506 * 9 8 7 37 37 H 1.08998 * 109.47656 * 210.00363 * 9 8 7 38 38 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 39 39 H 1.09001 * 109.47659 * 299.99430 * 15 13 12 40 40 H 1.08995 * 109.47574 * 60.00208 * 15 13 12 41 41 H 1.08999 * 109.47016 * 299.99634 * 16 15 13 42 42 H 1.09005 * 109.46989 * 180.02562 * 16 15 13 43 43 H 1.08992 * 109.47375 * 180.02562 * 17 16 15 44 44 H 1.09004 * 109.46658 * 60.00353 * 17 16 15 45 45 H 0.97001 * 119.99893 * 264.99780 * 20 18 17 46 46 H 0.97005 * 119.99453 * 179.97438 * 24 23 21 47 47 H 1.08996 * 109.47599 * 300.00068 * 29 13 12 48 48 H 1.09001 * 109.47077 * 60.00676 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0044 5 6 1.9718 3.5946 -0.0013 6 6 3.3544 3.5974 -0.0061 7 7 4.0335 2.4674 -0.0058 8 6 3.4306 1.2949 -0.0004 9 6 4.2542 0.0329 -0.0009 10 6 4.5347 -0.3844 1.4198 11 8 4.1082 0.2780 2.3419 12 7 5.2603 -1.4932 1.6657 13 6 5.5325 -1.8992 3.0468 14 1 4.6755 -1.6527 3.6736 15 6 6.7697 -1.1604 3.5610 16 6 7.0544 -1.5849 5.0032 17 6 7.3047 -3.0935 5.0509 18 6 6.0675 -3.8322 4.5366 19 1 5.2106 -3.5861 5.1637 20 7 6.3074 -5.2768 4.5818 21 6 6.0801 -5.9727 5.7391 22 1 5.7245 -5.4566 6.6185 23 6 6.3080 -7.3413 5.7819 24 7 6.0891 -8.0103 6.8941 25 14 6.9239 -8.2338 4.2609 26 1 8.4089 -8.2378 4.2567 27 1 6.4251 -9.6325 4.2718 28 1 6.4273 -7.5406 3.0451 29 6 5.7825 -3.4078 3.0950 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2185 2.3519 0.0083 34 1 1.4235 4.5250 -0.0025 35 1 3.8851 4.5380 -0.0110 36 1 5.1960 0.2138 -0.5191 37 1 3.7054 -0.7590 -0.5105 38 1 5.5986 -2.0249 0.9282 39 1 7.6268 -1.4069 2.9343 40 1 6.5915 -0.0857 3.5267 41 1 6.1975 -1.3387 5.6303 42 1 7.9355 -1.0582 5.3697 43 1 7.5070 -3.3959 6.0783 44 1 8.1616 -3.3395 4.4239 45 1 6.6272 -5.7402 3.7919 46 1 6.2480 -8.9668 6.9240 47 1 4.9012 -3.9341 2.7286 48 1 6.6397 -3.6543 2.4683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981294362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:30 Heat of formation + Delta-G solvation = -36.974322 kcal Electronic energy + Delta-G solvation = -28468.486774 eV Core-core repulsion = 24523.574286 eV Total energy + Delta-G solvation = -3944.912488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13693 -39.78510 -38.45037 -37.93541 -34.74324 -33.51112 -33.23693 -31.74897 -31.31279 -29.80061 -28.56048 -27.91619 -27.58162 -23.58389 -23.20156 -23.09274 -21.99436 -21.12165 -20.27147 -19.52112 -18.44811 -17.65574 -17.47065 -17.01189 -16.72380 -16.08180 -15.90874 -15.15839 -14.70616 -14.64764 -14.50887 -14.23635 -13.99290 -13.84743 -13.74696 -13.55366 -13.23705 -13.14288 -12.71739 -12.61277 -12.35842 -12.18440 -12.00331 -11.80969 -11.74395 -11.23709 -10.99215 -10.94761 -10.82082 -10.36634 -10.29039 -10.20270 -10.07092 -9.97371 -9.88048 -9.62050 -9.55849 -8.96085 -8.86268 -8.63849 -7.25519 -5.75340 -3.10806 0.78407 0.97204 2.69435 2.82559 3.09305 3.37581 3.40286 3.45685 3.58143 3.98667 4.26633 4.38217 4.59995 4.62225 4.73728 4.77433 4.79554 4.89309 4.96301 5.04839 5.09228 5.11694 5.19083 5.31408 5.46591 5.48978 5.56210 5.62437 5.67489 5.68812 5.75799 5.82889 5.86965 5.98658 6.10792 6.11001 6.25663 6.31734 6.42970 6.50853 6.62497 6.68617 6.83966 6.92208 7.06112 7.54308 7.70439 8.01716 8.27567 8.43843 9.22352 9.94780 10.14705 11.43068 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.002376 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.778249 B =11781.757556 C =12556.025242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.093 3.907 4 C -0.166 4.166 5 C -0.134 4.134 6 C 0.063 3.937 7 N -0.439 5.439 8 C 0.127 3.873 9 C -0.088 4.088 10 C 0.523 3.477 11 O -0.535 6.535 12 N -0.725 5.725 13 C 0.151 3.849 14 H 0.088 0.912 15 C -0.124 4.124 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.188 3.812 19 H 0.057 0.943 20 N -0.749 5.749 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.885 3.115 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 C -0.133 4.133 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.399 0.601 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.069 0.931 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 22.527 -19.497 30.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.154 4.154 6 C -0.094 4.094 7 N -0.148 5.148 8 C -0.013 4.013 9 C -0.128 4.128 10 C 0.309 3.691 11 O -0.411 6.411 12 N -0.376 5.376 13 C 0.046 3.954 14 H 0.106 0.894 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.078 3.922 19 H 0.075 0.925 20 N -0.391 5.391 21 C -0.370 4.370 22 H 0.108 0.892 23 C -0.193 4.193 24 N -0.582 5.582 25 Si 0.716 3.284 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.171 4.171 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.232 0.768 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.861 22.742 -18.585 30.403 hybrid contribution -0.586 -0.845 -1.332 1.683 sum -8.447 21.897 -19.917 30.782 Atomic orbital electron populations 1.23131 0.77999 1.04543 1.01301 1.86109 1.21653 1.25847 1.88164 1.19844 0.93076 0.85269 0.97299 1.21667 1.00761 0.92132 1.04637 1.21976 0.95770 0.98218 0.99427 1.22591 0.91445 0.96276 0.99132 1.67435 1.40034 0.97507 1.09796 1.19900 0.87713 0.93364 1.00320 1.20457 1.01692 0.94636 0.96033 1.20236 0.77715 0.80548 0.90626 1.90709 1.51205 1.53001 1.46174 1.46098 1.55018 1.27184 1.09287 1.20976 0.98426 0.94150 0.81842 0.89420 1.21886 0.97362 0.99855 0.97170 1.21481 1.01220 0.97162 0.95474 1.22246 0.99991 0.93063 1.02374 1.20063 0.95552 0.84245 0.92328 0.92541 1.42770 1.81104 1.02988 1.12193 1.19082 1.37324 0.90699 0.89944 0.89170 1.24681 1.01657 0.96295 0.96669 1.69707 1.55123 1.07789 1.25630 0.86538 0.78821 0.79407 0.83678 1.21156 1.21837 1.20362 1.22116 1.01972 0.93297 0.99761 0.92436 0.92613 0.87719 0.84297 0.84506 0.82426 0.87022 0.86946 0.76760 0.92096 0.92068 0.92059 0.92379 0.91434 0.92759 0.80736 0.93110 0.91256 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.83 101.05 0.99 1.15 16 2 O -0.31 -3.12 9.54 -19.44 -0.19 -3.31 16 3 C 0.09 1.02 6.67 -39.07 -0.26 0.75 16 4 C -0.17 -1.43 9.14 -39.13 -0.36 -1.79 16 5 C -0.13 -1.06 10.11 -39.46 -0.40 -1.46 16 6 C 0.06 0.59 11.18 -17.54 -0.20 0.39 16 7 N -0.44 -5.32 10.27 -9.36 -0.10 -5.41 16 8 C 0.13 1.52 5.29 -82.42 -0.44 1.09 16 9 C -0.09 -0.90 5.78 -29.04 -0.17 -1.07 16 10 C 0.52 6.96 7.79 -10.98 -0.09 6.87 16 11 O -0.53 -9.35 15.69 5.56 0.09 -9.26 16 12 N -0.73 -8.51 5.08 -53.81 -0.27 -8.78 16 13 C 0.15 2.10 2.46 -67.93 -0.17 1.94 16 14 H 0.09 1.42 7.57 -51.93 -0.39 1.03 16 15 C -0.12 -1.70 5.50 -26.73 -0.15 -1.85 16 16 C -0.11 -1.67 5.92 -26.73 -0.16 -1.83 16 17 C -0.14 -2.36 5.50 -26.73 -0.15 -2.51 16 18 C 0.19 3.55 2.77 -67.95 -0.19 3.37 16 19 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 20 N -0.75 -17.44 4.92 -53.45 -0.26 -17.70 16 21 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 23 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 24 N -0.93 -29.39 13.97 55.49 0.78 -28.62 16 25 Si 0.89 22.00 27.74 -169.99 -4.71 17.29 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.28 -6.43 6.52 56.52 0.37 -6.07 16 29 C -0.13 -2.00 4.85 -26.76 -0.13 -2.13 16 30 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 31 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.14 0.82 6.45 -52.49 -0.34 0.48 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.11 0.94 7.51 -51.93 -0.39 0.55 16 38 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 46 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -36.14 389.82 -8.48 -44.62 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.59 Total: 9.29 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.10 Total: -4.00 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.14 Total: -60.51 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.10 Total: -12.57 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.14 -8.48 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981294362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds