Wall clock time and date at job start Tue Mar 31 2020 17:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35906 * 117.00366 * 2 1 4 4 C 1.39147 * 120.47126 * 0.21091 * 3 2 1 5 5 C 1.38535 * 118.37149 * 180.26053 * 4 3 2 6 6 C 1.38261 * 119.22168 * 359.75962 * 5 4 3 7 7 N 1.31840 * 120.88461 * 0.02562 * 6 5 4 8 8 C 1.31843 * 121.78705 * 359.97438 * 7 6 5 9 9 C 1.50690 * 119.66227 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47185 * 90.00239 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47194 * 34.71875 * 13 12 10 15 15 C 1.52997 * 109.46691 * 274.72265 * 13 12 10 16 16 C 1.53006 * 109.46908 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47416 * 59.99581 * 16 15 13 18 18 C 1.53000 * 109.47253 * 300.00429 * 17 16 15 19 19 H 1.08999 * 109.46803 * 299.99717 * 18 17 16 20 20 N 1.46500 * 109.47051 * 179.97438 * 18 17 16 21 21 C 1.36940 * 119.99629 * 85.00063 * 20 18 17 22 22 H 1.07993 * 120.00309 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99425 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99577 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00263 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46767 * 90.00431 * 25 23 21 27 27 H 1.48501 * 109.47080 * 210.00197 * 25 23 21 28 28 H 1.48501 * 109.47086 * 330.00323 * 25 23 21 29 29 C 1.52993 * 109.47100 * 154.71955 * 13 12 10 30 30 H 1.09005 * 109.46890 * 299.99882 * 1 2 3 31 31 H 1.08993 * 109.47246 * 59.99379 * 1 2 3 32 32 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.81454 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.38902 * 179.72863 * 5 4 3 35 35 H 1.07998 * 119.55597 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47343 * 330.00506 * 9 8 7 37 37 H 1.08998 * 109.47656 * 210.00363 * 9 8 7 38 38 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 39 39 H 1.09001 * 109.47659 * 299.99430 * 15 13 12 40 40 H 1.08995 * 109.47574 * 60.00208 * 15 13 12 41 41 H 1.08999 * 109.47016 * 299.99634 * 16 15 13 42 42 H 1.09005 * 109.46989 * 180.02562 * 16 15 13 43 43 H 1.08992 * 109.47375 * 180.02562 * 17 16 15 44 44 H 1.09004 * 109.46658 * 60.00353 * 17 16 15 45 45 H 0.97001 * 119.99893 * 264.99780 * 20 18 17 46 46 H 0.97005 * 119.99453 * 179.97438 * 24 23 21 47 47 H 1.08996 * 109.47599 * 300.00068 * 29 13 12 48 48 H 1.09001 * 109.47077 * 60.00676 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0044 5 6 1.9718 3.5946 -0.0013 6 6 3.3544 3.5974 -0.0061 7 7 4.0335 2.4674 -0.0058 8 6 3.4306 1.2949 -0.0004 9 6 4.2542 0.0329 -0.0009 10 6 4.5347 -0.3844 1.4198 11 8 4.1082 0.2780 2.3419 12 7 5.2603 -1.4932 1.6657 13 6 5.5325 -1.8992 3.0468 14 1 4.6755 -1.6527 3.6736 15 6 6.7697 -1.1604 3.5610 16 6 7.0544 -1.5849 5.0032 17 6 7.3047 -3.0935 5.0509 18 6 6.0675 -3.8322 4.5366 19 1 5.2106 -3.5861 5.1637 20 7 6.3074 -5.2768 4.5818 21 6 6.0801 -5.9727 5.7391 22 1 5.7245 -5.4566 6.6185 23 6 6.3080 -7.3413 5.7819 24 7 6.0891 -8.0103 6.8941 25 14 6.9239 -8.2338 4.2609 26 1 8.4089 -8.2378 4.2567 27 1 6.4251 -9.6325 4.2718 28 1 6.4273 -7.5406 3.0451 29 6 5.7825 -3.4078 3.0950 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2185 2.3519 0.0083 34 1 1.4235 4.5250 -0.0025 35 1 3.8851 4.5380 -0.0110 36 1 5.1960 0.2138 -0.5191 37 1 3.7054 -0.7590 -0.5105 38 1 5.5986 -2.0249 0.9282 39 1 7.6268 -1.4069 2.9343 40 1 6.5915 -0.0857 3.5267 41 1 6.1975 -1.3387 5.6303 42 1 7.9355 -1.0582 5.3697 43 1 7.5070 -3.3959 6.0783 44 1 8.1616 -3.3395 4.4239 45 1 6.6272 -5.7402 3.7919 46 1 6.2480 -8.9668 6.9240 47 1 4.9012 -3.9341 2.7286 48 1 6.6397 -3.6543 2.4683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981294362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:29 Heat of formation + Delta-G solvation = -63.229367 kcal Electronic energy + Delta-G solvation = -28469.625279 eV Core-core repulsion = 24523.574286 eV Total energy + Delta-G solvation = -3946.050992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85265 -40.85649 -39.32190 -39.03000 -36.32777 -34.81761 -34.13760 -33.25778 -32.44361 -30.96416 -29.98166 -28.76200 -28.27286 -25.42331 -24.07073 -23.84574 -23.22559 -22.42887 -21.39382 -20.95533 -19.59585 -19.06839 -18.15880 -18.07423 -17.66257 -16.93589 -16.73910 -16.41799 -16.18781 -15.81500 -15.40467 -15.32050 -15.11108 -14.97472 -14.83866 -14.78388 -14.53801 -14.26236 -14.04612 -13.77793 -13.49829 -13.19017 -13.03845 -12.92590 -12.82332 -12.38830 -12.36070 -12.32681 -12.17600 -11.98985 -11.80770 -11.68959 -11.50332 -11.44762 -10.95757 -10.89729 -10.60405 -10.57082 -10.02611 -9.33507 -9.29751 -8.00273 -5.34160 0.10633 0.29943 1.39294 1.44052 1.51239 1.69009 2.14305 2.24729 2.50883 2.84055 3.30282 3.30978 3.46270 3.63764 3.82661 3.85088 3.87613 4.02358 4.07716 4.17321 4.27227 4.28834 4.33460 4.34892 4.38848 4.47831 4.50940 4.52881 4.56128 4.65607 4.69580 4.75146 4.81524 4.98451 5.05151 5.12381 5.12855 5.15480 5.19441 5.34925 5.48312 5.49852 5.51452 5.62914 5.79476 6.22008 6.23572 6.61320 7.00739 7.09993 7.31211 7.85080 8.06346 9.21456 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.002376 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.778249 B =11781.757556 C =12556.025242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.076 3.924 4 C -0.171 4.171 5 C -0.128 4.128 6 C 0.046 3.954 7 N -0.467 5.467 8 C 0.095 3.905 9 C -0.080 4.080 10 C 0.522 3.478 11 O -0.582 6.582 12 N -0.712 5.712 13 C 0.159 3.841 14 H 0.060 0.940 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.127 4.127 18 C 0.180 3.820 19 H 0.032 0.968 20 N -0.749 5.749 21 C -0.228 4.228 22 H 0.051 0.949 23 C -0.069 4.069 24 N -0.987 5.987 25 Si 0.960 3.040 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.246 1.246 29 C -0.118 4.118 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.417 0.583 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.367 0.633 46 H 0.257 0.743 47 H 0.068 0.932 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 23.815 -22.942 34.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.028 3.972 4 C -0.197 4.197 5 C -0.147 4.147 6 C -0.111 4.111 7 N -0.177 5.177 8 C -0.044 4.044 9 C -0.120 4.120 10 C 0.309 3.691 11 O -0.461 6.461 12 N -0.363 5.363 13 C 0.053 3.947 14 H 0.079 0.921 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.167 4.167 18 C 0.072 3.928 19 H 0.050 0.950 20 N -0.392 5.392 21 C -0.359 4.359 22 H 0.069 0.931 23 C -0.260 4.260 24 N -0.638 5.638 25 Si 0.787 3.213 26 H -0.205 1.205 27 H -0.226 1.226 28 H -0.170 1.170 29 C -0.156 4.156 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.182 0.818 34 H 0.189 0.811 35 H 0.198 0.802 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.254 0.746 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.201 0.799 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.632 24.062 -22.093 33.546 hybrid contribution -0.760 -1.114 -0.167 1.359 sum -8.391 22.947 -22.261 33.053 Atomic orbital electron populations 1.23382 0.76294 1.05740 1.02339 1.86063 1.23527 1.25943 1.88248 1.20040 0.93240 0.86185 0.97725 1.22069 1.02130 0.91761 1.03737 1.22377 0.95410 0.99407 0.97516 1.23123 0.92603 0.96504 0.98858 1.67409 1.41169 0.98296 1.10810 1.20148 0.88628 0.93799 1.01854 1.20462 1.02800 0.94844 0.93865 1.20792 0.76749 0.80037 0.91483 1.90686 1.53058 1.54537 1.47828 1.45901 1.54572 1.27039 1.08826 1.20687 0.97681 0.93396 0.82888 0.92135 1.21800 0.97739 0.99286 0.96523 1.21410 1.01649 0.95166 0.96403 1.22076 0.99320 0.94719 1.00622 1.20252 0.95454 0.82193 0.94897 0.94969 1.42717 1.81138 1.04588 1.10778 1.18991 1.35636 0.90927 0.90370 0.93110 1.25570 1.02795 0.97281 1.00363 1.69908 1.57354 1.07971 1.28525 0.85340 0.78257 0.77439 0.80313 1.20451 1.22567 1.16996 1.21914 1.02936 0.93821 0.96976 0.92277 0.90615 0.86566 0.81779 0.81066 0.80225 0.85127 0.85179 0.74631 0.90066 0.92668 0.93104 0.90584 0.94406 0.91548 0.79901 0.93436 0.91331 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 113.37 1.11 1.30 16 2 O -0.33 -6.33 9.54 -92.49 -0.88 -7.22 16 3 C 0.08 1.59 6.67 22.60 0.15 1.74 16 4 C -0.17 -2.65 9.14 22.56 0.21 -2.44 16 5 C -0.13 -1.73 10.11 22.35 0.23 -1.50 16 6 C 0.05 0.81 11.18 84.70 0.95 1.75 16 7 N -0.47 -10.99 10.27 -183.51 -1.88 -12.88 16 8 C 0.10 2.20 5.29 42.67 0.23 2.43 16 9 C -0.08 -1.53 5.78 29.10 0.17 -1.36 16 10 C 0.52 13.38 7.79 87.66 0.68 14.06 16 11 O -0.58 -20.48 15.69 -3.03 -0.05 -20.53 16 12 N -0.71 -15.29 5.08 -442.54 -2.25 -17.54 16 13 C 0.16 4.24 2.46 44.99 0.11 4.35 16 14 H 0.06 1.98 7.57 -2.39 -0.02 1.96 16 15 C -0.11 -2.93 5.50 30.60 0.17 -2.76 16 16 C -0.11 -3.03 5.92 30.60 0.18 -2.85 16 17 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 18 C 0.18 6.78 2.77 44.98 0.12 6.91 16 19 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 20 N -0.75 -34.45 4.92 -323.01 -1.59 -36.04 16 21 C -0.23 -13.10 10.41 84.03 0.87 -12.23 16 22 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 23 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 24 N -0.99 -64.01 13.97 21.65 0.30 -63.70 16 25 Si 0.96 45.10 27.74 68.60 1.90 47.00 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 28 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 29 C -0.12 -3.32 4.85 30.58 0.15 -3.17 16 30 H 0.06 0.61 7.69 -2.38 -0.02 0.60 16 31 H 0.08 0.50 7.71 -2.39 -0.02 0.49 16 32 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.16 1.52 6.45 -2.91 -0.02 1.50 16 34 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.13 1.95 7.51 -2.39 -0.02 1.93 16 38 H 0.42 6.01 8.60 -92.70 -0.80 5.21 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.37 15.80 5.66 -92.71 -0.52 15.28 16 46 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 47 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -82.05 389.82 1.11 -80.93 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.41 Total: 31.56 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.96 Total: -1.59 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -5.42 Total: -130.16 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.93 Total: -27.74 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Total: -82.05 1.11 -80.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981294362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.705 kcal (2) G-P(sol) polarization free energy of solvation -82.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds